Wall clock time and date at job start Tue Mar 31 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33329 * 126.81060 * 2 1 4 4 N 1.28511 * 109.43581 * 180.02562 * 3 2 1 5 5 N 1.28712 * 110.64119 * 359.71737 * 4 3 2 6 6 H 0.97004 * 126.03491 * 180.29881 * 5 4 3 7 7 C 1.37005 * 126.81654 * 180.02562 * 2 1 3 8 8 C 1.47232 * 127.19031 * 359.97438 * 7 2 1 9 9 O 1.21618 * 119.99891 * 326.38903 * 8 7 2 10 10 N 1.34778 * 119.99771 * 146.39091 * 8 7 2 11 11 C 1.46927 * 120.63596 * 354.59628 * 10 8 7 12 12 C 1.53190 * 108.77410 * 233.58863 * 11 10 8 13 13 C 1.53042 * 109.31370 * 305.36173 * 12 11 10 14 14 H 1.09003 * 109.45467 * 301.36411 * 13 12 11 15 15 N 1.46498 * 109.45922 * 181.39179 * 13 12 11 16 16 C 1.36931 * 120.00400 * 85.00171 * 15 13 12 17 17 H 1.08003 * 119.99816 * 359.72011 * 16 15 13 18 18 C 1.38807 * 120.00092 * 179.72401 * 16 15 13 19 19 N 1.31620 * 120.00352 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00215 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47227 * 89.99980 * 20 18 16 22 22 H 1.48493 * 109.47568 * 210.00237 * 20 18 16 23 23 H 1.48505 * 109.47115 * 330.00400 * 20 18 16 24 24 C 1.53037 * 109.53562 * 61.36711 * 13 12 11 25 25 C 1.46931 * 120.62446 * 174.57267 * 10 8 7 26 26 H 1.09004 * 109.58475 * 246.19951 * 25 10 8 27 27 C 1.52993 * 109.58950 * 6.62802 * 25 10 8 28 28 H 1.08994 * 109.47212 * 269.97245 * 1 2 3 29 29 H 1.08997 * 109.47256 * 29.97738 * 1 2 3 30 30 H 1.09001 * 109.46666 * 149.97614 * 1 2 3 31 31 H 1.08997 * 109.58749 * 113.79880 * 11 10 8 32 32 H 1.08998 * 109.70151 * 353.44297 * 11 10 8 33 33 H 1.09001 * 109.49730 * 185.41060 * 12 11 10 34 34 H 1.08993 * 109.50032 * 65.31340 * 12 11 10 35 35 H 0.97001 * 119.99185 * 264.71995 * 15 13 12 36 36 H 0.96998 * 120.00543 * 179.97438 * 19 18 16 37 37 H 1.08999 * 109.49943 * 58.58705 * 24 13 12 38 38 H 1.09004 * 109.49512 * 178.68653 * 24 13 12 39 39 H 1.08995 * 109.47364 * 55.98657 * 27 25 10 40 40 H 1.09004 * 109.47205 * 175.98675 * 27 25 10 41 41 H 1.09003 * 109.46871 * 295.98695 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0675 0.0000 4 7 3.5323 0.6837 -0.0005 5 7 3.6056 -0.6013 0.0050 6 1 4.4213 -1.1263 0.0100 7 6 2.3280 -1.0968 -0.0005 8 6 1.9223 -2.5121 -0.0006 9 8 0.9118 -2.8551 0.5827 10 7 2.6709 -3.4276 -0.6471 11 6 3.8273 -3.0146 -1.4538 12 6 3.6809 -3.6005 -2.8617 13 6 3.4932 -5.1161 -2.7622 14 1 4.3493 -5.5551 -2.2498 15 7 3.3861 -5.6840 -4.1083 16 6 4.5185 -6.0022 -4.8093 17 1 5.4908 -5.8304 -4.3716 18 6 4.4168 -6.5457 -6.0826 19 7 5.5053 -6.8521 -6.7562 20 14 2.7353 -6.8435 -6.8395 21 1 2.3097 -5.6355 -7.5910 22 1 2.8072 -8.0024 -7.7651 23 1 1.7519 -7.1293 -5.7640 24 6 2.2165 -5.4231 -1.9761 25 6 2.3463 -4.8579 -0.5581 26 1 3.1420 -5.3809 -0.0276 27 6 1.0233 -5.0381 0.1888 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 4.7438 -3.3872 -0.9964 32 1 3.8645 -1.9268 -1.5128 33 1 4.5777 -3.3822 -3.4416 34 1 2.8137 -3.1579 -3.3516 35 1 2.5128 -5.8383 -4.5014 36 1 5.4343 -7.2321 -7.6458 37 1 1.3631 -4.9633 -2.4743 38 1 2.0710 -6.5022 -1.9256 39 1 0.2438 -4.4608 -0.3083 40 1 0.7484 -6.0929 0.1918 41 1 1.1352 -4.6889 1.2154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044698831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:38 Heat of formation + Delta-G solvation = 92.310609 kcal Electronic energy + Delta-G solvation = -24289.190051 eV Core-core repulsion = 20821.477907 eV Total energy + Delta-G solvation = -3467.712143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.66313 -40.55696 -37.75687 -35.04761 -34.22959 -33.48013 -32.11982 -31.90859 -30.03116 -28.16493 -27.31006 -24.93900 -24.04338 -23.32380 -22.62777 -21.36200 -20.52444 -19.95544 -18.14776 -17.65232 -17.02095 -16.67462 -16.18053 -15.25900 -14.96200 -14.70057 -14.29959 -14.06086 -13.87372 -13.60476 -13.34072 -13.14548 -12.84699 -12.70078 -12.53442 -12.41448 -12.13268 -12.06064 -11.74867 -11.32389 -11.14665 -11.10972 -11.06850 -10.80050 -10.60664 -10.41389 -10.07234 -9.70807 -9.56775 -9.41379 -9.05493 -8.78683 -7.41397 -5.88154 -3.25159 0.71568 1.99737 2.16752 2.47683 2.85834 3.29735 3.32934 3.38635 3.92668 4.18418 4.47988 4.49265 4.63400 4.79453 4.82852 4.94070 5.00172 5.15876 5.23695 5.41519 5.42188 5.44810 5.49773 5.59979 5.63366 5.74061 5.83574 5.87448 5.97523 6.04379 6.12860 6.18248 6.23482 6.33181 6.48090 6.59614 6.75263 7.07801 7.77495 7.85693 8.03449 8.30550 9.08020 9.80833 9.99757 11.29774 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.004120 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.335632 B = 6793.665737 C = 7268.595042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.051 3.949 3 N -0.268 5.268 4 N -0.051 5.051 5 N -0.376 5.376 6 H 0.453 0.547 7 C -0.063 4.063 8 C 0.593 3.407 9 O -0.508 6.508 10 N -0.596 5.596 11 C 0.093 3.907 12 C -0.149 4.149 13 C 0.184 3.816 14 H 0.058 0.942 15 N -0.747 5.747 16 C -0.250 4.250 17 H 0.090 0.910 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.884 3.116 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C -0.140 4.140 25 C 0.150 3.850 26 H 0.079 0.921 27 C -0.138 4.138 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.362 0.638 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 9.156 15.676 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.089 4.089 3 N -0.135 5.135 4 N -0.032 5.032 5 N -0.104 5.104 6 H 0.302 0.698 7 C -0.197 4.197 8 C 0.378 3.622 9 O -0.383 6.383 10 N -0.329 5.329 11 C -0.030 4.030 12 C -0.190 4.190 13 C 0.074 3.926 14 H 0.076 0.924 15 N -0.388 5.388 16 C -0.379 4.379 17 H 0.108 0.892 18 C -0.188 4.188 19 N -0.578 5.578 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.179 4.179 25 C 0.047 3.953 26 H 0.097 0.903 27 C -0.195 4.195 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.195 0.805 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.735 10.251 15.890 20.073 hybrid contribution -0.804 -1.470 -0.903 1.903 sum -7.539 8.781 14.987 18.935 Atomic orbital electron populations 1.20191 0.84985 1.03825 1.03803 1.22269 0.98509 0.86995 1.01138 1.74924 0.95209 1.25981 1.17415 1.78182 1.15957 0.92405 1.16632 1.45878 1.08927 1.06943 1.48696 0.69834 1.22232 0.85012 0.96863 1.15563 1.16874 0.83728 0.82019 0.79630 1.90910 1.24472 1.78089 1.44816 1.48196 1.29579 1.07245 1.47926 1.22130 0.87973 0.99298 0.93635 1.22639 1.03411 0.99752 0.93239 1.20123 0.95288 0.90586 0.86600 0.92428 1.42769 1.05523 1.76125 1.14407 1.19037 0.86716 1.35136 0.97036 0.89175 1.24670 0.96450 1.00762 0.96931 1.69693 1.26366 1.48746 1.13033 0.86570 0.85013 0.77843 0.79195 1.21061 1.21641 1.20289 1.22371 0.99769 1.01634 0.94168 1.21404 0.98639 0.78211 0.97021 0.90333 1.22241 0.95873 1.00265 1.01161 0.89727 0.90182 0.89919 0.90470 0.91147 0.89771 0.91979 0.80539 0.92928 0.91616 0.90135 0.90869 0.93301 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 9.88 36.00 0.36 -0.31 16 2 C 0.05 0.61 7.29 -82.39 -0.60 0.01 16 3 N -0.27 -3.56 12.35 33.51 0.41 -3.14 16 4 N -0.05 -0.62 13.35 60.35 0.81 0.19 16 5 N -0.38 -3.70 5.67 33.31 0.19 -3.51 16 6 H 0.45 3.03 7.37 -190.33 -1.40 1.63 16 7 C -0.06 -0.72 6.18 -82.33 -0.51 -1.22 16 8 C 0.59 7.12 7.39 -12.61 -0.09 7.02 16 9 O -0.51 -6.88 11.56 5.26 0.06 -6.82 16 10 N -0.60 -6.72 2.97 -166.55 -0.50 -7.22 16 11 C 0.09 0.98 5.51 -3.71 -0.02 0.96 16 12 C -0.15 -2.17 5.66 -26.61 -0.15 -2.32 16 13 C 0.18 3.05 2.73 -67.89 -0.19 2.87 16 14 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 15 N -0.75 -16.23 4.93 -53.39 -0.26 -16.49 16 16 C -0.25 -6.59 10.41 -15.06 -0.16 -6.75 16 17 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 18 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 19 N -0.93 -28.22 13.97 55.49 0.78 -27.45 16 20 Si 0.88 21.33 27.73 -169.99 -4.71 16.61 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 24 C -0.14 -1.94 4.84 -26.61 -0.13 -2.07 16 25 C 0.15 1.74 3.49 -67.60 -0.24 1.50 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 C -0.14 -1.59 7.59 37.15 0.28 -1.31 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.80 7.63 -51.93 -0.40 0.41 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.67 4.73 -51.93 -0.25 0.42 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.36 7.89 5.66 -40.82 -0.23 7.66 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.94 6.74 -51.93 -0.35 0.59 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.84 6.75 -51.93 -0.35 0.49 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -31.80 326.33 -6.64 -38.44 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.79 Total: 5.96 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.54 Total: -1.48 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 1.43 Total: -57.63 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: 0.06 Total: -6.82 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.80 -6.64 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.750 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds