Wall clock time and date at job start Tue Mar 31 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33329 * 126.81060 * 2 1 4 4 N 1.28511 * 109.43581 * 180.02562 * 3 2 1 5 5 N 1.28712 * 110.64119 * 359.71737 * 4 3 2 6 6 H 0.97004 * 126.03491 * 180.29881 * 5 4 3 7 7 C 1.37005 * 126.81654 * 180.02562 * 2 1 3 8 8 C 1.47232 * 127.19031 * 359.97438 * 7 2 1 9 9 O 1.21618 * 119.99891 * 326.38903 * 8 7 2 10 10 N 1.34778 * 119.99771 * 146.39091 * 8 7 2 11 11 C 1.46927 * 120.63596 * 354.59628 * 10 8 7 12 12 C 1.53190 * 108.77410 * 233.58863 * 11 10 8 13 13 C 1.53042 * 109.31370 * 305.36173 * 12 11 10 14 14 H 1.09003 * 109.45467 * 301.36411 * 13 12 11 15 15 N 1.46498 * 109.45922 * 181.39179 * 13 12 11 16 16 C 1.36931 * 120.00400 * 85.00171 * 15 13 12 17 17 H 1.08003 * 119.99816 * 359.72011 * 16 15 13 18 18 C 1.38807 * 120.00092 * 179.72401 * 16 15 13 19 19 N 1.31620 * 120.00352 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00215 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47227 * 89.99980 * 20 18 16 22 22 H 1.48493 * 109.47568 * 210.00237 * 20 18 16 23 23 H 1.48505 * 109.47115 * 330.00400 * 20 18 16 24 24 C 1.53037 * 109.53562 * 61.36711 * 13 12 11 25 25 C 1.46931 * 120.62446 * 174.57267 * 10 8 7 26 26 H 1.09004 * 109.58475 * 246.19951 * 25 10 8 27 27 C 1.52993 * 109.58950 * 6.62802 * 25 10 8 28 28 H 1.08994 * 109.47212 * 269.97245 * 1 2 3 29 29 H 1.08997 * 109.47256 * 29.97738 * 1 2 3 30 30 H 1.09001 * 109.46666 * 149.97614 * 1 2 3 31 31 H 1.08997 * 109.58749 * 113.79880 * 11 10 8 32 32 H 1.08998 * 109.70151 * 353.44297 * 11 10 8 33 33 H 1.09001 * 109.49730 * 185.41060 * 12 11 10 34 34 H 1.08993 * 109.50032 * 65.31340 * 12 11 10 35 35 H 0.97001 * 119.99185 * 264.71995 * 15 13 12 36 36 H 0.96998 * 120.00543 * 179.97438 * 19 18 16 37 37 H 1.08999 * 109.49943 * 58.58705 * 24 13 12 38 38 H 1.09004 * 109.49512 * 178.68653 * 24 13 12 39 39 H 1.08995 * 109.47364 * 55.98657 * 27 25 10 40 40 H 1.09004 * 109.47205 * 175.98675 * 27 25 10 41 41 H 1.09003 * 109.46871 * 295.98695 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0675 0.0000 4 7 3.5323 0.6837 -0.0005 5 7 3.6056 -0.6013 0.0050 6 1 4.4213 -1.1263 0.0100 7 6 2.3280 -1.0968 -0.0005 8 6 1.9223 -2.5121 -0.0006 9 8 0.9118 -2.8551 0.5827 10 7 2.6709 -3.4276 -0.6471 11 6 3.8273 -3.0146 -1.4538 12 6 3.6809 -3.6005 -2.8617 13 6 3.4932 -5.1161 -2.7622 14 1 4.3493 -5.5551 -2.2498 15 7 3.3861 -5.6840 -4.1083 16 6 4.5185 -6.0022 -4.8093 17 1 5.4908 -5.8304 -4.3716 18 6 4.4168 -6.5457 -6.0826 19 7 5.5053 -6.8521 -6.7562 20 14 2.7353 -6.8435 -6.8395 21 1 2.3097 -5.6355 -7.5910 22 1 2.8072 -8.0024 -7.7651 23 1 1.7519 -7.1293 -5.7640 24 6 2.2165 -5.4231 -1.9761 25 6 2.3463 -4.8579 -0.5581 26 1 3.1420 -5.3809 -0.0276 27 6 1.0233 -5.0381 0.1888 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 4.7438 -3.3872 -0.9964 32 1 3.8645 -1.9268 -1.5128 33 1 4.5777 -3.3822 -3.4416 34 1 2.8137 -3.1579 -3.3516 35 1 2.5128 -5.8383 -4.5014 36 1 5.4343 -7.2321 -7.6458 37 1 1.3631 -4.9633 -2.4743 38 1 2.0710 -6.5022 -1.9256 39 1 0.2438 -4.4608 -0.3083 40 1 0.7484 -6.0929 0.1918 41 1 1.1352 -4.6889 1.2154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044698831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:37 Heat of formation + Delta-G solvation = 69.546677 kcal Electronic energy + Delta-G solvation = -24290.177169 eV Core-core repulsion = 20821.477907 eV Total energy + Delta-G solvation = -3468.699261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.55385 -41.54660 -38.91679 -36.46183 -35.24493 -34.40756 -33.87054 -32.84836 -31.60749 -29.09765 -28.34642 -26.12227 -25.32206 -24.39749 -23.89631 -22.34989 -21.76563 -21.02811 -19.69422 -18.91660 -17.95204 -17.58975 -17.15976 -16.74303 -16.27479 -15.90334 -15.65434 -15.18881 -14.91573 -14.79517 -14.64730 -14.17541 -14.06312 -13.82990 -13.64601 -13.40471 -13.24141 -13.03453 -12.99619 -12.84953 -12.65066 -12.20843 -12.12492 -12.07260 -12.04804 -11.80900 -11.59992 -11.42134 -10.95553 -10.50071 -10.33808 -9.76527 -9.33030 -8.02366 -5.35496 -0.17538 1.08866 1.33417 1.37958 1.39624 1.47152 1.53542 1.97353 2.48019 3.05478 3.29095 3.31247 3.46757 3.60436 3.72909 3.86348 3.97219 3.99024 4.14090 4.26768 4.42726 4.52482 4.53780 4.59229 4.63135 4.74434 4.80428 4.88447 4.93469 4.99347 5.13234 5.20468 5.23620 5.36538 5.43361 5.57894 5.63210 5.77798 6.13586 6.21843 6.83646 7.08057 7.13152 7.84754 8.01779 9.18872 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.004120 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.335632 B = 6793.665737 C = 7268.595042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.043 3.957 3 N -0.292 5.292 4 N -0.060 5.060 5 N -0.356 5.356 6 H 0.466 0.534 7 C -0.067 4.067 8 C 0.598 3.402 9 O -0.523 6.523 10 N -0.593 5.593 11 C 0.102 3.898 12 C -0.142 4.142 13 C 0.176 3.824 14 H 0.056 0.944 15 N -0.752 5.752 16 C -0.225 4.225 17 H 0.063 0.937 18 C -0.062 4.062 19 N -0.983 5.983 20 Si 0.948 3.052 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.251 1.251 24 C -0.130 4.130 25 C 0.154 3.846 26 H 0.098 0.902 27 C -0.129 4.129 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.363 0.637 36 H 0.256 0.744 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 9.477 17.280 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 N -0.159 5.159 4 N -0.042 5.042 5 N -0.088 5.088 6 H 0.318 0.682 7 C -0.202 4.202 8 C 0.383 3.617 9 O -0.398 6.398 10 N -0.326 5.326 11 C -0.021 4.021 12 C -0.183 4.183 13 C 0.068 3.932 14 H 0.074 0.926 15 N -0.395 5.395 16 C -0.356 4.356 17 H 0.081 0.919 18 C -0.253 4.253 19 N -0.634 5.634 20 Si 0.776 3.224 21 H -0.210 1.210 22 H -0.226 1.226 23 H -0.176 1.176 24 C -0.169 4.169 25 C 0.052 3.948 26 H 0.115 0.885 27 C -0.187 4.187 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.196 0.804 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.016 10.601 17.557 22.020 hybrid contribution -0.355 -1.537 -1.313 2.052 sum -8.371 9.065 16.245 20.399 Atomic orbital electron populations 1.20264 0.83681 1.04239 1.04512 1.22687 0.99554 0.86863 1.00641 1.74919 0.95654 1.26799 1.18526 1.78131 1.15826 0.93211 1.16987 1.45853 1.09179 1.06431 1.47326 0.68185 1.22164 0.85457 0.96522 1.16036 1.16851 0.83392 0.82083 0.79410 1.90915 1.25043 1.78332 1.45500 1.48172 1.29598 1.07120 1.47755 1.22104 0.88840 1.00001 0.91201 1.22421 1.02056 0.98144 0.95645 1.20403 0.96881 0.91484 0.84407 0.92617 1.42835 1.04055 1.76499 1.16067 1.19031 0.87221 1.32543 0.96779 0.91855 1.25419 0.99996 1.02000 0.97907 1.69863 1.28854 1.51240 1.13459 0.85515 0.81147 0.77131 0.78604 1.21022 1.22597 1.17584 1.22250 0.97698 1.01966 0.95019 1.21407 0.99555 0.78324 0.95560 0.88462 1.22121 0.95140 1.00814 1.00575 0.88821 0.89089 0.90135 0.87659 0.89792 0.91592 0.93014 0.80409 0.93475 0.92142 0.89899 0.92324 0.92041 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 9.88 71.23 0.70 -0.49 16 2 C 0.04 0.95 7.29 42.04 0.31 1.26 16 3 N -0.29 -7.35 12.35 -47.88 -0.59 -7.94 16 4 N -0.06 -1.37 13.35 37.02 0.49 -0.88 16 5 N -0.36 -6.20 5.67 -48.52 -0.27 -6.48 16 6 H 0.47 4.90 7.37 -219.89 -1.62 3.28 16 7 C -0.07 -1.39 6.18 40.41 0.25 -1.14 16 8 C 0.60 12.86 7.39 86.61 0.64 13.50 16 9 O -0.52 -13.00 11.56 -4.09 -0.05 -13.05 16 10 N -0.59 -11.69 2.97 -799.09 -2.38 -14.06 16 11 C 0.10 1.86 5.51 86.36 0.48 2.33 16 12 C -0.14 -3.89 5.66 30.67 0.17 -3.72 16 13 C 0.18 5.55 2.73 45.02 0.12 5.67 16 14 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 15 N -0.75 -31.87 4.93 -322.82 -1.59 -33.46 16 16 C -0.22 -11.91 10.41 84.03 0.87 -11.04 16 17 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 18 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 19 N -0.98 -61.12 13.97 21.65 0.30 -60.81 16 20 Si 0.95 44.05 27.73 68.60 1.90 45.95 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 24 C -0.13 -3.28 4.84 30.67 0.15 -3.14 16 25 C 0.15 3.11 3.49 44.97 0.16 3.27 16 26 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 27 C -0.13 -2.63 7.59 71.98 0.55 -2.08 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.44 7.63 -2.39 -0.02 1.42 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.35 4.73 -2.39 -0.01 1.33 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.36 15.16 5.66 -92.71 -0.52 14.63 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.38 6.74 -2.39 -0.02 1.36 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.43 6.75 -2.39 -0.02 1.42 16 Total: -1.00 -69.09 326.33 1.55 -67.53 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -1.13 Total: 21.79 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 4.87 Total: 1.42 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -4.03 Total: -123.64 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.05 Total: -13.05 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.95 kcal Total: -69.09 1.55 -67.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.078 kcal (2) G-P(sol) polarization free energy of solvation -69.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds