Wall clock time and date at job start Tue Mar 31 2020 03:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28720 * 126.03124 * 2 1 4 4 N 1.28516 * 110.63527 * 180.02562 * 3 2 1 5 5 C 1.33321 * 109.43880 * 359.72380 * 4 3 2 6 6 C 1.37010 * 106.37242 * 0.43270 * 5 4 3 7 7 C 1.47236 * 127.18683 * 179.84590 * 6 5 4 8 8 O 1.21625 * 119.99483 * 184.96953 * 7 6 5 9 9 N 1.34771 * 120.00286 * 4.97536 * 7 6 5 10 10 C 1.46498 * 120.00265 * 175.41617 * 9 7 6 11 11 C 1.52998 * 109.45903 * 59.71881 * 10 9 7 12 12 C 1.53042 * 109.45540 * 299.74986 * 10 9 7 13 13 C 1.53161 * 109.32727 * 301.35798 * 12 10 9 14 14 N 1.46935 * 108.76782 * 305.35411 * 13 12 10 15 15 C 1.36935 * 120.63154 * 233.63150 * 14 13 12 16 16 H 1.08001 * 119.99936 * 147.95083 * 15 14 13 17 17 C 1.38813 * 120.00304 * 327.94869 * 15 14 13 18 18 N 1.31615 * 120.00149 * 167.82655 * 17 15 14 19 19 Si 1.86805 * 119.99724 * 347.83028 * 17 15 14 20 20 H 1.48503 * 109.46819 * 85.60290 * 19 17 15 21 21 H 1.48495 * 109.46750 * 205.60099 * 19 17 15 22 22 H 1.48502 * 109.47330 * 325.60321 * 19 17 15 23 23 C 1.46924 * 118.73594 * 53.61105 * 14 13 12 24 24 C 1.53041 * 109.46100 * 179.69570 * 10 9 7 25 25 H 1.08995 * 109.47308 * 272.53835 * 1 2 3 26 26 H 1.09009 * 109.47226 * 32.54345 * 1 2 3 27 27 H 1.09006 * 109.46659 * 152.53784 * 1 2 3 28 28 H 1.07993 * 126.81501 * 180.27836 * 5 4 3 29 29 H 0.97006 * 119.99796 * 355.13827 * 9 7 6 30 30 H 1.08997 * 109.47116 * 60.00384 * 11 10 9 31 31 H 1.09004 * 109.46902 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.47351 * 300.00281 * 11 10 9 33 33 H 1.08996 * 109.50153 * 61.29625 * 12 10 9 34 34 H 1.09000 * 109.49859 * 181.39455 * 12 10 9 35 35 H 1.09004 * 109.59213 * 185.57308 * 13 12 10 36 36 H 1.08994 * 109.71105 * 65.20976 * 13 12 10 37 37 H 0.96997 * 119.99892 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.58781 * 186.59969 * 23 14 13 39 39 H 1.09011 * 109.70457 * 66.24630 * 23 14 13 40 40 H 1.09004 * 109.49371 * 178.60699 * 24 10 9 41 41 H 1.08995 * 109.49705 * 298.66876 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0410 0.0000 4 7 3.4612 0.6998 -0.0005 5 6 3.5552 -0.6301 0.0051 6 6 2.2712 -1.1081 -0.0006 7 6 1.8464 -2.5178 -0.0008 8 8 0.6667 -2.7973 -0.0975 9 7 2.7647 -3.4984 0.1063 10 6 2.3360 -4.8956 0.2072 11 6 1.5285 -5.2721 -1.0366 12 6 1.4654 -5.0730 1.4533 13 6 2.2652 -4.6623 2.6932 14 7 3.5202 -5.4260 2.7205 15 6 3.8720 -6.1505 3.8280 16 1 4.4403 -7.0624 3.7186 17 6 3.4984 -5.7129 5.0912 18 7 3.6207 -6.5143 6.1281 19 14 2.8221 -3.9866 5.3195 20 1 1.3603 -3.9892 5.0578 21 1 3.0750 -3.5361 6.7116 22 1 3.4933 -3.0625 4.3704 23 6 4.3901 -5.3980 1.5368 24 6 3.5662 -5.8003 0.3097 25 1 -0.3634 0.0455 1.0266 26 1 -0.3634 0.8664 -0.5529 27 1 -0.3633 -0.9119 -0.4740 28 1 4.4633 -1.2147 0.0104 29 1 3.7097 -3.2793 0.1125 30 1 2.1483 -5.1454 -1.9242 31 1 1.2091 -6.3116 -0.9615 32 1 0.6526 -4.6276 -1.1100 33 1 0.5778 -4.4459 1.3692 34 1 1.1664 -6.1174 1.5426 35 1 1.6857 -4.8795 3.5905 36 1 2.4873 -3.5960 2.6509 37 1 3.3599 -6.2083 7.0109 38 1 5.2126 -6.1005 1.6711 39 1 4.7875 -4.3926 1.3965 40 1 3.2474 -6.8378 0.4097 41 1 4.1737 -5.6913 -0.5887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045426823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:30 Heat of formation + Delta-G solvation = 95.135209 kcal Electronic energy + Delta-G solvation = -24977.471128 eV Core-core repulsion = 21509.881468 eV Total energy + Delta-G solvation = -3467.589659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -43.43019 -40.36795 -37.77083 -35.07211 -34.49850 -32.76098 -31.62120 -30.58610 -30.51986 -28.21305 -27.81390 -24.46027 -23.89563 -22.96490 -22.69703 -21.31663 -20.63180 -19.06630 -18.32992 -16.95440 -16.93932 -16.80899 -15.41108 -15.38940 -14.89078 -14.62937 -14.33499 -14.14686 -13.80580 -13.63276 -13.50019 -13.26510 -13.19996 -12.50557 -12.25980 -12.15642 -12.08005 -11.86657 -11.46571 -11.39724 -11.27569 -10.96707 -10.64683 -10.40395 -10.33180 -10.12167 -9.82235 -9.65918 -9.62309 -9.49046 -9.06126 -8.63784 -6.96814 -5.98387 -3.42580 0.79645 1.93420 2.16149 2.95692 3.09599 3.26556 3.42883 3.44859 4.14577 4.32555 4.46934 4.57418 4.80395 4.84202 4.90593 4.97729 5.13783 5.17396 5.18617 5.36881 5.43020 5.66871 5.73991 5.76685 5.88986 5.90499 5.96840 6.04288 6.18403 6.19341 6.36031 6.39983 6.47959 6.54536 6.58050 6.65074 6.84427 7.40820 7.95693 7.99678 8.18764 8.29683 8.88646 9.66382 10.04747 11.17681 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.005984 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.891829 B = 4677.976677 C = 5437.635874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.255 5.255 3 N -0.064 5.064 4 N -0.274 5.274 5 C 0.001 3.999 6 C -0.067 4.067 7 C 0.598 3.402 8 O -0.535 6.535 9 N -0.694 5.694 10 C 0.185 3.815 11 C -0.162 4.162 12 C -0.143 4.143 13 C 0.124 3.876 14 N -0.605 5.605 15 C -0.261 4.261 16 H 0.086 0.914 17 C 0.026 3.974 18 N -0.913 5.913 19 Si 0.894 3.106 20 H -0.288 1.288 21 H -0.305 1.305 22 H -0.273 1.273 23 C 0.148 3.852 24 C -0.139 4.139 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.198 0.802 29 H 0.402 0.598 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.068 0.932 39 H 0.019 0.981 40 H 0.083 0.917 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 7.887 -15.888 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.052 5.052 3 N -0.045 5.045 4 N -0.136 5.136 5 C -0.160 4.160 6 C -0.201 4.201 7 C 0.382 3.618 8 O -0.412 6.412 9 N -0.345 5.345 10 C 0.101 3.899 11 C -0.220 4.220 12 C -0.183 4.183 13 C -0.001 4.001 14 N -0.329 5.329 15 C -0.390 4.390 16 H 0.103 0.897 17 C -0.173 4.173 18 N -0.556 5.556 19 Si 0.725 3.275 20 H -0.216 1.216 21 H -0.233 1.233 22 H -0.198 1.198 23 C 0.021 3.979 24 C -0.179 4.179 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.215 0.785 29 H 0.238 0.762 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.037 0.963 40 H 0.101 0.899 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.181 9.172 -15.736 18.936 hybrid contribution -0.097 -0.040 0.390 0.404 sum -5.278 9.131 -15.346 18.621 Atomic orbital electron populations 1.22606 0.71438 1.06938 1.05720 1.47617 1.09870 1.03437 1.44272 1.78255 0.96747 1.11619 1.17912 1.74884 1.09139 1.12562 1.17048 1.23907 0.96799 0.91981 1.03286 1.22099 0.91523 0.91181 1.15319 1.16615 0.85963 0.82335 0.76926 1.90710 1.16749 1.83267 1.50507 1.45874 1.09381 1.06508 1.72696 1.20394 0.95461 0.78406 0.95652 1.22261 1.01265 1.02256 0.96249 1.22399 0.98552 1.02655 0.94675 1.21383 0.87963 0.94110 0.96693 1.44307 1.17539 1.57068 1.13985 1.18907 1.34062 1.03070 0.82940 0.89685 1.25367 0.99151 0.97432 0.95356 1.69748 1.50839 1.35490 0.99508 0.86890 0.78117 0.86605 0.75842 1.21625 1.23322 1.19841 1.20914 0.92742 0.98161 0.86050 1.22363 0.95955 0.99955 0.99588 0.88685 0.88107 0.86147 0.78535 0.76190 0.93040 0.91742 0.90403 0.90958 0.90664 0.90928 0.96029 0.92681 0.91348 0.96333 0.89874 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 11.05 59.85 0.66 1.32 16 2 N -0.26 -3.26 3.79 -64.11 -0.24 -3.50 16 3 N -0.06 -0.92 13.14 60.35 0.79 -0.13 16 4 N -0.27 -4.01 12.35 30.47 0.38 -3.64 16 5 C 0.00 0.01 11.54 -17.35 -0.20 -0.19 16 6 C -0.07 -0.88 6.98 -82.33 -0.57 -1.46 16 7 C 0.60 8.21 7.21 -12.61 -0.09 8.12 16 8 O -0.53 -8.05 11.02 5.26 0.06 -7.99 16 9 N -0.69 -8.96 4.09 -48.69 -0.20 -9.16 16 10 C 0.19 2.59 0.66 -131.78 -0.09 2.50 16 11 C -0.16 -2.00 8.39 37.16 0.31 -1.68 16 12 C -0.14 -2.47 4.67 -26.63 -0.12 -2.60 16 13 C 0.12 2.62 3.89 -3.72 -0.01 2.61 16 14 N -0.60 -13.42 2.74 -172.33 -0.47 -13.90 16 15 C -0.26 -7.04 10.06 -15.06 -0.15 -7.19 16 16 H 0.09 2.45 8.06 -52.49 -0.42 2.02 16 17 C 0.03 0.74 5.35 -17.43 -0.09 0.65 16 18 N -0.91 -27.71 13.97 55.49 0.78 -26.93 16 19 Si 0.89 22.69 24.23 -169.99 -4.12 18.57 16 20 H -0.29 -7.13 6.40 56.52 0.36 -6.77 16 21 H -0.30 -7.92 7.11 56.52 0.40 -7.51 16 22 H -0.27 -6.82 6.58 56.52 0.37 -6.45 16 23 C 0.15 2.54 6.24 -3.71 -0.02 2.51 16 24 C -0.14 -1.90 4.96 -26.61 -0.13 -2.03 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.12 1.11 6.22 -51.93 -0.32 0.79 16 28 H 0.20 1.76 7.56 -52.49 -0.40 1.37 16 29 H 0.40 4.43 6.30 -40.82 -0.26 4.17 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.06 5.99 -51.93 -0.31 0.75 16 33 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.74 4.36 -51.93 -0.23 1.51 16 36 H 0.02 0.47 6.51 -51.93 -0.34 0.13 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 39 H 0.02 0.30 6.94 -51.92 -0.36 -0.06 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -33.08 317.99 -4.30 -37.38 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.54 Total: 1.94 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.52 Total: 2.56 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 1.03 Total: -57.26 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.06 Total: -7.99 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.12 Total: 18.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.08 -4.30 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045426823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.519 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds