Wall clock time and date at job start Tue Mar 31 2020 03:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36595 * 126.57774 * 2 1 4 4 C 1.47519 * 125.77254 * 0.04375 * 3 2 1 5 5 O 1.21594 * 120.00214 * 359.71194 * 4 3 2 6 6 N 1.34782 * 120.00104 * 179.71437 * 4 3 2 7 7 C 1.46497 * 119.99822 * 179.97438 * 6 4 3 8 8 C 1.52993 * 110.89183 * 297.57543 * 7 6 4 9 9 C 1.55157 * 111.03555 * 173.66724 * 7 6 4 10 10 C 1.54334 * 103.02095 * 277.21854 * 9 7 6 11 11 N 1.47014 * 107.26782 * 338.14225 * 10 9 7 12 12 C 1.36945 * 125.64902 * 178.84833 * 11 10 9 13 13 H 1.07997 * 119.99756 * 179.68982 * 12 11 10 14 14 C 1.38805 * 119.99878 * 359.68887 * 12 11 10 15 15 N 1.31624 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 300.00154 * 16 14 12 19 19 H 1.48498 * 109.47018 * 60.00200 * 16 14 12 20 20 C 1.47428 * 108.70537 * 358.58102 * 11 10 9 21 21 N 1.34398 * 108.45778 * 179.77514 * 3 2 1 22 22 N 1.28768 * 109.52336 * 0.23120 * 21 3 2 23 23 N 1.34814 * 126.58001 * 180.17379 * 2 1 3 24 24 C 1.46492 * 126.59673 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.46866 * 89.99762 * 1 2 3 26 26 H 1.09001 * 109.46605 * 210.00012 * 1 2 3 27 27 H 1.08991 * 109.46866 * 329.99795 * 1 2 3 28 28 H 0.96991 * 119.99925 * 359.97438 * 6 4 3 29 29 H 1.09002 * 109.47666 * 182.43089 * 8 7 6 30 30 H 1.09008 * 109.47143 * 302.42655 * 8 7 6 31 31 H 1.08999 * 109.47170 * 62.42125 * 8 7 6 32 32 H 1.08998 * 110.71770 * 35.78022 * 9 7 6 33 33 H 1.09002 * 110.71853 * 158.87455 * 9 7 6 34 34 H 1.08998 * 109.99457 * 218.65928 * 10 9 7 35 35 H 1.09007 * 109.77698 * 97.49747 * 10 9 7 36 36 H 0.97001 * 119.99885 * 179.97438 * 15 14 12 37 37 H 1.09003 * 110.36579 * 143.19056 * 20 11 10 38 38 H 1.08993 * 110.36917 * 265.41008 * 20 11 10 39 39 H 1.08999 * 109.47742 * 270.30114 * 24 23 2 40 40 H 1.09005 * 109.47006 * 30.30019 * 24 23 2 41 41 H 1.09004 * 109.47378 * 150.29849 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6860 2.7628 -0.0035 6 7 2.7818 3.4988 0.0066 7 6 2.3375 4.8948 0.0070 8 6 1.5472 5.2161 -1.2630 9 6 3.5395 5.8617 0.1737 10 6 3.7631 5.8784 1.7006 11 7 2.5038 5.4558 2.3308 12 6 2.2920 5.3171 3.6766 13 1 1.3249 5.0043 4.0416 14 6 3.3203 5.5785 4.5716 15 7 4.4989 5.9601 4.1267 16 14 3.0312 5.3900 6.4074 17 1 4.2775 5.7254 7.1418 18 1 1.9430 6.3060 6.8338 19 1 2.6435 3.9880 6.7060 20 6 1.5049 5.2122 1.2742 21 7 3.5984 0.6789 0.0050 22 7 3.6300 -0.6084 0.0032 23 7 2.3105 -1.0826 -0.0033 24 6 1.8865 -2.4848 -0.0070 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 3.7292 3.2913 0.0105 29 1 1.2656 6.2691 -1.2591 30 1 2.1643 5.0084 -2.1373 31 1 0.6489 4.5998 -1.2977 32 1 4.4186 5.4767 -0.3430 33 1 3.2861 6.8579 -0.1889 34 1 4.0221 6.8851 2.0284 35 1 4.5608 5.1839 1.9642 36 1 5.2173 6.1431 4.7522 37 1 0.8746 4.3625 1.5367 38 1 0.8950 6.1017 1.1165 39 1 1.7765 -2.8340 1.0197 40 1 0.9318 -2.5743 -0.5254 41 1 2.6356 -3.0896 -0.5182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046208909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:43 Heat of formation + Delta-G solvation = 89.112194 kcal Electronic energy + Delta-G solvation = -24356.183393 eV Core-core repulsion = 20888.332557 eV Total energy + Delta-G solvation = -3467.850837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20696 -39.53980 -37.13411 -35.00852 -33.83337 -32.33617 -31.75317 -29.99846 -28.62098 -27.97244 -27.54112 -25.58898 -23.88553 -23.18774 -21.35841 -20.53156 -20.00297 -18.90782 -17.84270 -16.74915 -16.43625 -15.81869 -15.42948 -14.58670 -14.51978 -14.32002 -14.19491 -13.74285 -13.52076 -13.40694 -13.13543 -13.10469 -12.70400 -12.66503 -11.98854 -11.90692 -11.82436 -11.71579 -11.57738 -11.11619 -10.83551 -10.80564 -10.35437 -10.27987 -10.22437 -10.04469 -9.90530 -9.57191 -9.34021 -9.07883 -8.54538 -8.42188 -6.70553 -5.61834 -2.93495 1.13065 1.88244 1.98774 3.46360 3.49626 3.50328 3.51678 3.66658 4.21566 4.23822 4.58146 4.59145 4.70349 4.80439 4.96379 5.16289 5.25286 5.34535 5.46284 5.56648 5.58280 5.70001 5.76337 5.82577 5.94138 6.10608 6.23426 6.24173 6.36524 6.42599 6.49705 6.62745 6.76549 6.89943 7.21545 7.63434 7.67990 7.86338 7.90303 8.12222 8.35793 8.62651 9.32389 9.92799 10.59169 11.50191 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.005118 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.540134 B = 5469.704219 C = 6383.060783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.119 3.881 3 C -0.097 4.097 4 C 0.608 3.392 5 O -0.540 6.540 6 N -0.684 5.684 7 C 0.156 3.844 8 C -0.148 4.148 9 C -0.147 4.147 10 C 0.177 3.823 11 N -0.603 5.603 12 C -0.221 4.221 13 H 0.075 0.925 14 C -0.009 4.009 15 N -0.924 5.924 16 Si 0.910 3.090 17 H -0.291 1.291 18 H -0.286 1.286 19 H -0.287 1.287 20 C 0.132 3.868 21 N -0.199 5.199 22 N -0.074 5.074 23 N -0.369 5.369 24 C 0.089 3.911 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.405 0.595 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.251 0.749 37 H 0.056 0.944 38 H 0.025 0.975 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 -13.521 -12.749 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.019 4.019 3 C -0.236 4.236 4 C 0.392 3.608 5 O -0.417 6.417 6 N -0.333 5.333 7 C 0.070 3.930 8 C -0.207 4.207 9 C -0.185 4.185 10 C 0.053 3.947 11 N -0.329 5.329 12 C -0.350 4.350 13 H 0.093 0.907 14 C -0.205 4.205 15 N -0.572 5.572 16 Si 0.740 3.260 17 H -0.216 1.216 18 H -0.212 1.212 19 H -0.214 1.214 20 C 0.005 3.995 21 N -0.072 5.072 22 N -0.053 5.053 23 N -0.156 5.156 24 C -0.052 4.052 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.133 0.867 28 H 0.241 0.759 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.745 -13.715 -12.533 19.447 hybrid contribution -0.442 -0.243 1.134 1.242 sum -6.187 -13.958 -11.399 19.054 Atomic orbital electron populations 1.20700 0.84703 1.05503 1.04341 1.21904 0.96199 0.86325 0.97463 1.21379 0.88834 0.95833 1.17585 1.16589 0.85692 0.82164 0.76319 1.90695 1.15906 1.83382 1.51731 1.45586 1.09777 1.05216 1.72694 1.21526 0.96013 0.79644 0.95864 1.21990 1.00878 1.01863 0.95957 1.23231 0.96214 0.98017 1.01067 1.21153 0.89123 0.99711 0.84749 1.44429 1.07811 1.79419 1.01261 1.18994 0.96862 1.38742 0.80358 0.90712 1.24752 0.95895 1.02005 0.97858 1.69940 1.02113 1.52570 1.32545 0.86230 0.76710 0.77745 0.85278 1.21648 1.21231 1.21407 1.21888 0.92162 0.98199 0.87249 1.74610 1.19258 1.03949 1.09386 1.81971 0.95904 1.03637 1.23794 1.50245 1.06590 1.07611 1.51115 1.22107 1.02219 0.76335 1.04576 0.89263 0.90934 0.86675 0.75947 0.91799 0.93117 0.90999 0.91667 0.90856 0.93887 0.93540 0.93856 0.92585 0.95702 0.89426 0.88695 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.38 36.01 0.34 -0.57 16 2 C 0.12 1.56 7.02 -81.87 -0.57 0.98 16 3 C -0.10 -1.60 6.99 -83.55 -0.58 -2.19 16 4 C 0.61 11.02 7.21 -12.47 -0.09 10.93 16 5 O -0.54 -10.13 11.52 5.28 0.06 -10.06 16 6 N -0.68 -12.50 5.17 -46.65 -0.24 -12.74 16 7 C 0.16 2.88 0.82 -129.67 -0.11 2.78 16 8 C -0.15 -2.29 8.58 37.15 0.32 -1.97 16 9 C -0.15 -2.73 5.99 -24.89 -0.15 -2.88 16 10 C 0.18 4.36 5.37 -3.06 -0.02 4.35 16 11 N -0.60 -15.94 3.39 -170.06 -0.58 -16.51 16 12 C -0.22 -6.42 10.28 -15.06 -0.15 -6.57 16 13 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 14 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 15 N -0.92 -27.76 10.31 55.49 0.57 -27.19 16 16 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 C 0.13 2.95 6.10 -2.52 -0.02 2.93 16 21 N -0.20 -3.44 12.04 32.84 0.40 -3.05 16 22 N -0.07 -1.14 13.78 60.35 0.83 -0.31 16 23 N -0.37 -4.37 4.03 -63.59 -0.26 -4.63 16 24 C 0.09 0.52 11.17 59.84 0.67 1.19 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 27 H 0.11 1.39 6.43 -51.93 -0.33 1.06 16 28 H 0.41 7.26 8.18 -40.82 -0.33 6.92 16 29 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 30 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.07 1.17 6.53 -51.93 -0.34 0.83 16 32 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 33 H 0.07 1.25 8.01 -51.93 -0.42 0.84 16 34 H 0.04 1.16 7.52 -51.93 -0.39 0.77 16 35 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.06 1.33 6.31 -51.93 -0.33 1.00 16 38 H 0.03 0.55 8.04 -51.93 -0.42 0.14 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.30 7.78 -51.93 -0.40 -0.11 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -34.96 334.40 -5.49 -40.45 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.83 Total: 2.48 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -0.46 Total: 8.60 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: 0.72 Total: -64.42 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.06 Total: -10.06 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.96 -5.49 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046208909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.558 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds