Wall clock time and date at job start Tue Mar 31 2020 03:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.36595 * 126.57774 * 2 1 4 4 C 1.47519 * 125.77254 * 0.04375 * 3 2 1 5 5 O 1.21594 * 120.00214 * 359.71194 * 4 3 2 6 6 N 1.34782 * 120.00104 * 179.71437 * 4 3 2 7 7 C 1.46497 * 119.99822 * 179.97438 * 6 4 3 8 8 C 1.52993 * 110.89183 * 297.57543 * 7 6 4 9 9 C 1.55157 * 111.03555 * 173.66724 * 7 6 4 10 10 C 1.54334 * 103.02095 * 277.21854 * 9 7 6 11 11 N 1.47014 * 107.26782 * 338.14225 * 10 9 7 12 12 C 1.36945 * 125.64902 * 178.84833 * 11 10 9 13 13 H 1.07997 * 119.99756 * 179.68982 * 12 11 10 14 14 C 1.38805 * 119.99878 * 359.68887 * 12 11 10 15 15 N 1.31624 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47187 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 300.00154 * 16 14 12 19 19 H 1.48498 * 109.47018 * 60.00200 * 16 14 12 20 20 C 1.47428 * 108.70537 * 358.58102 * 11 10 9 21 21 N 1.34398 * 108.45778 * 179.77514 * 3 2 1 22 22 N 1.28768 * 109.52336 * 0.23120 * 21 3 2 23 23 N 1.34814 * 126.58001 * 180.17379 * 2 1 3 24 24 C 1.46492 * 126.59673 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.46866 * 89.99762 * 1 2 3 26 26 H 1.09001 * 109.46605 * 210.00012 * 1 2 3 27 27 H 1.08991 * 109.46866 * 329.99795 * 1 2 3 28 28 H 0.96991 * 119.99925 * 359.97438 * 6 4 3 29 29 H 1.09002 * 109.47666 * 182.43089 * 8 7 6 30 30 H 1.09008 * 109.47143 * 302.42655 * 8 7 6 31 31 H 1.08999 * 109.47170 * 62.42125 * 8 7 6 32 32 H 1.08998 * 110.71770 * 35.78022 * 9 7 6 33 33 H 1.09002 * 110.71853 * 158.87455 * 9 7 6 34 34 H 1.08998 * 109.99457 * 218.65928 * 10 9 7 35 35 H 1.09007 * 109.77698 * 97.49747 * 10 9 7 36 36 H 0.97001 * 119.99885 * 179.97438 * 15 14 12 37 37 H 1.09003 * 110.36579 * 143.19056 * 20 11 10 38 38 H 1.08993 * 110.36917 * 265.41008 * 20 11 10 39 39 H 1.08999 * 109.47742 * 270.30114 * 24 23 2 40 40 H 1.09005 * 109.47006 * 30.30019 * 24 23 2 41 41 H 1.09004 * 109.47378 * 150.29849 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6860 2.7628 -0.0035 6 7 2.7818 3.4988 0.0066 7 6 2.3375 4.8948 0.0070 8 6 1.5472 5.2161 -1.2630 9 6 3.5395 5.8617 0.1737 10 6 3.7631 5.8784 1.7006 11 7 2.5038 5.4558 2.3308 12 6 2.2920 5.3171 3.6766 13 1 1.3249 5.0043 4.0416 14 6 3.3203 5.5785 4.5716 15 7 4.4989 5.9601 4.1267 16 14 3.0312 5.3900 6.4074 17 1 4.2775 5.7254 7.1418 18 1 1.9430 6.3060 6.8338 19 1 2.6435 3.9880 6.7060 20 6 1.5049 5.2122 1.2742 21 7 3.5984 0.6789 0.0050 22 7 3.6300 -0.6084 0.0032 23 7 2.3105 -1.0826 -0.0033 24 6 1.8865 -2.4848 -0.0070 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 3.7292 3.2913 0.0105 29 1 1.2656 6.2691 -1.2591 30 1 2.1643 5.0084 -2.1373 31 1 0.6489 4.5998 -1.2977 32 1 4.4186 5.4767 -0.3430 33 1 3.2861 6.8579 -0.1889 34 1 4.0221 6.8851 2.0284 35 1 4.5608 5.1839 1.9642 36 1 5.2173 6.1431 4.7522 37 1 0.8746 4.3625 1.5367 38 1 0.8950 6.1017 1.1165 39 1 1.7765 -2.8340 1.0197 40 1 0.9318 -2.5743 -0.5254 41 1 2.6356 -3.0896 -0.5182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046208909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:42 Heat of formation + Delta-G solvation = 62.645049 kcal Electronic energy + Delta-G solvation = -24357.331095 eV Core-core repulsion = 20888.332557 eV Total energy + Delta-G solvation = -3468.998538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.28096 -41.00921 -38.75441 -36.00503 -35.57797 -33.65193 -33.22481 -31.68908 -30.34521 -28.93537 -28.30907 -27.48792 -25.52118 -24.60595 -22.52483 -22.08649 -21.46286 -20.37849 -19.22562 -18.60363 -17.41429 -17.13850 -16.81628 -16.59265 -15.93091 -15.68679 -15.50316 -15.23371 -14.88442 -14.25063 -14.20657 -14.04079 -13.93427 -13.85808 -13.50336 -13.36588 -13.31819 -13.02303 -12.95288 -12.80523 -12.73895 -12.16034 -12.13080 -12.05338 -11.95942 -11.68047 -11.53313 -11.12806 -10.76321 -10.69426 -10.23767 -9.89323 -8.84703 -7.84222 -5.17993 0.12558 0.63822 1.15938 1.41896 1.45490 1.51819 2.16936 2.35270 2.48774 3.20567 3.33815 3.45102 3.60768 3.65789 3.73303 3.82248 4.07911 4.21528 4.33077 4.43348 4.61429 4.65405 4.66193 4.69483 4.73458 4.80506 4.85845 4.92133 4.96717 5.07792 5.10763 5.12457 5.39948 5.43741 5.54028 5.66250 5.70630 5.78916 6.21238 6.53676 6.91540 7.12231 7.24522 7.79416 8.43854 9.25739 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.005118 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.540134 B = 5469.704219 C = 6383.060783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.130 3.870 3 C -0.133 4.133 4 C 0.605 3.395 5 O -0.551 6.551 6 N -0.690 5.690 7 C 0.165 3.835 8 C -0.137 4.137 9 C -0.130 4.130 10 C 0.186 3.814 11 N -0.622 5.622 12 C -0.241 4.241 13 H 0.072 0.928 14 C -0.063 4.063 15 N -0.948 5.948 16 Si 0.974 3.026 17 H -0.291 1.291 18 H -0.275 1.275 19 H -0.283 1.283 20 C 0.129 3.871 21 N -0.229 5.229 22 N -0.097 5.097 23 N -0.354 5.354 24 C 0.072 3.928 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.405 0.595 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.246 0.754 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -15.122 -13.890 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.009 4.009 3 C -0.273 4.273 4 C 0.390 3.610 5 O -0.430 6.430 6 N -0.339 5.339 7 C 0.079 3.921 8 C -0.196 4.196 9 C -0.168 4.168 10 C 0.061 3.939 11 N -0.348 5.348 12 C -0.370 4.370 13 H 0.090 0.910 14 C -0.256 4.256 15 N -0.597 5.597 16 Si 0.803 3.197 17 H -0.217 1.217 18 H -0.201 1.201 19 H -0.210 1.210 20 C 0.003 3.997 21 N -0.101 5.101 22 N -0.077 5.077 23 N -0.140 5.140 24 C -0.066 4.066 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.240 0.760 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.122 0.878 40 H 0.149 0.851 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.282 -15.354 -13.700 21.828 hybrid contribution -0.050 0.129 1.504 1.510 sum -7.331 -15.225 -12.197 20.840 Atomic orbital electron populations 1.20816 0.82022 1.06081 1.05891 1.22368 0.97538 0.85668 0.95332 1.21415 0.89591 0.95964 1.20352 1.16839 0.85517 0.82873 0.75750 1.90674 1.16191 1.83834 1.52292 1.45655 1.09892 1.05296 1.73075 1.21469 0.95317 0.79917 0.95440 1.21912 1.00267 1.02706 0.94697 1.23110 0.97522 0.99707 0.96507 1.20907 0.87664 0.96572 0.88748 1.44698 1.09322 1.79411 1.01393 1.19320 0.96912 1.38591 0.82160 0.91009 1.25566 0.95746 1.02136 1.02143 1.70164 1.02651 1.53342 1.33524 0.85216 0.76671 0.77815 0.80028 1.21657 1.20105 1.20957 1.22018 0.91896 0.97587 0.88169 1.74565 1.20119 1.04933 1.10528 1.81842 0.98118 1.03083 1.24644 1.50608 1.05159 1.09382 1.48876 1.22718 1.04317 0.73120 1.06455 0.87014 0.87128 0.89213 0.76005 0.90149 0.90934 0.91794 0.89189 0.88449 0.97194 0.97173 0.94444 0.94443 0.95054 0.87755 0.85113 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.38 71.24 0.67 -0.82 16 2 C 0.13 3.22 7.02 41.72 0.29 3.51 16 3 C -0.13 -4.41 6.99 40.82 0.29 -4.13 16 4 C 0.60 22.04 7.21 86.69 0.62 22.66 16 5 O -0.55 -20.68 11.52 -4.01 -0.05 -20.73 16 6 N -0.69 -25.34 5.17 -419.77 -2.17 -27.51 16 7 C 0.17 5.98 0.82 5.00 0.00 5.99 16 8 C -0.14 -3.93 8.58 71.98 0.62 -3.32 16 9 C -0.13 -4.73 5.99 31.79 0.19 -4.54 16 10 C 0.19 9.43 5.37 86.73 0.47 9.89 16 11 N -0.62 -33.80 3.39 -691.96 -2.35 -36.14 16 12 C -0.24 -14.36 10.28 84.03 0.86 -13.50 16 13 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 14 C -0.06 -3.75 5.49 84.86 0.47 -3.28 16 15 N -0.95 -58.87 10.31 21.65 0.22 -58.65 16 16 Si 0.97 48.00 29.55 68.60 2.03 50.03 16 17 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 20 C 0.13 5.83 6.10 86.86 0.53 6.36 16 21 N -0.23 -8.04 12.04 -50.00 -0.60 -8.64 16 22 N -0.10 -2.98 13.78 37.02 0.51 -2.46 16 23 N -0.35 -7.67 4.03 -355.10 -1.43 -9.10 16 24 C 0.07 0.58 11.17 127.77 1.43 2.01 16 25 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.11 0.98 7.84 -2.39 -0.02 0.96 16 27 H 0.09 2.05 6.43 -2.39 -0.02 2.04 16 28 H 0.40 14.79 8.18 -92.71 -0.76 14.04 16 29 H 0.08 2.04 8.11 -2.39 -0.02 2.02 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.06 1.96 6.53 -2.39 -0.02 1.95 16 32 H 0.09 2.85 8.05 -2.39 -0.02 2.83 16 33 H 0.10 3.10 8.01 -2.39 -0.02 3.08 16 34 H 0.01 0.56 7.52 -2.39 -0.02 0.54 16 35 H 0.01 0.57 7.37 -2.38 -0.02 0.56 16 36 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.04 1.82 6.31 -2.39 -0.02 1.80 16 38 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 39 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.13 0.17 7.78 -2.38 -0.02 0.15 16 41 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -79.98 334.40 2.89 -77.09 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.30 Total: 15.25 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 6.44 Total: 20.86 kcal Atomic # 7 Polarization: -136.68 SS G_CDS: -5.82 Total: -142.50 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -79.98 2.89 -77.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046208909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.735 kcal (2) G-P(sol) polarization free energy of solvation -79.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds