Wall clock time and date at job start Tue Mar 31 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36598 * 126.58101 * 2 1 4 4 C 1.47531 * 125.76893 * 0.02562 * 3 2 1 5 5 O 1.21597 * 120.00027 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99843 * 179.97438 * 4 3 2 7 7 C 1.46503 * 120.00025 * 179.97438 * 6 4 3 8 8 C 1.53001 * 110.88442 * 62.42462 * 7 6 4 9 9 C 1.55150 * 111.00595 * 186.34596 * 7 6 4 10 10 C 1.54329 * 102.94157 * 82.57223 * 9 7 6 11 11 N 1.47023 * 107.26758 * 22.19495 * 10 9 7 12 12 C 1.36944 * 125.64831 * 181.02417 * 11 10 9 13 13 H 1.07996 * 120.00017 * 180.02562 * 12 11 10 14 14 C 1.38809 * 119.99771 * 0.04010 * 12 11 10 15 15 N 1.31624 * 120.00034 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99862 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47249 * 60.00005 * 16 14 12 18 18 H 1.48508 * 109.47035 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47053 * 299.99789 * 16 14 12 20 20 C 1.47426 * 108.70764 * 1.05514 * 11 10 9 21 21 N 1.34393 * 108.45956 * 180.02562 * 3 2 1 22 22 N 1.28761 * 109.52439 * 359.97438 * 21 3 2 23 23 N 1.34810 * 126.57823 * 179.68862 * 2 1 3 24 24 C 1.46497 * 126.59846 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47152 * 89.99853 * 1 2 3 26 26 H 1.09001 * 109.46980 * 329.99953 * 1 2 3 27 27 H 1.09004 * 109.47113 * 209.99934 * 1 2 3 28 28 H 0.97003 * 120.00356 * 359.97438 * 6 4 3 29 29 H 1.09003 * 109.47301 * 60.70509 * 8 7 6 30 30 H 1.09000 * 109.47057 * 180.70000 * 8 7 6 31 31 H 1.08998 * 109.47291 * 300.69940 * 8 7 6 32 32 H 1.09000 * 110.72450 * 200.92992 * 9 7 6 33 33 H 1.08999 * 110.72455 * 324.20998 * 9 7 6 34 34 H 1.09004 * 109.88312 * 262.77643 * 10 9 7 35 35 H 1.08994 * 109.88340 * 141.60535 * 10 9 7 36 36 H 0.97000 * 119.99421 * 179.97438 * 15 14 12 37 37 H 1.08997 * 110.36748 * 217.03654 * 20 11 10 38 38 H 1.09004 * 110.45538 * 94.75329 * 20 11 10 39 39 H 1.09005 * 109.46565 * 90.00011 * 24 23 2 40 40 H 1.08998 * 109.47218 * 210.00157 * 24 23 2 41 41 H 1.09000 * 109.47064 * 330.00331 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5028 0.0005 5 8 0.6859 2.7628 0.0006 6 7 2.7817 3.4987 0.0010 7 6 2.3375 4.8948 0.0010 8 6 1.5411 5.2138 1.2678 9 6 3.5408 5.8613 -0.1586 10 6 3.7733 5.8747 -1.6842 11 7 2.5151 5.4591 -2.3211 12 6 2.3096 5.3224 -3.6681 13 1 1.3441 5.0105 -4.0381 14 6 3.3423 5.5846 -4.5579 15 7 4.5189 5.9650 -4.1069 16 14 3.0622 5.3975 -6.3952 17 1 1.9760 6.3139 -6.8262 18 1 4.3121 5.7336 -7.1233 19 1 2.6759 3.9956 -6.6968 20 6 1.5111 5.2145 -1.2697 21 7 3.5984 0.6789 -0.0006 22 7 3.6299 -0.6083 -0.0004 23 7 2.3104 -1.0826 0.0059 24 6 1.8864 -2.4848 0.0130 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 3.7293 3.2913 0.0014 29 1 2.1721 5.0575 2.1427 30 1 1.2120 6.2525 1.2381 31 1 0.6718 4.5588 1.3250 32 1 3.2853 6.8579 0.2013 33 1 4.4173 5.4751 0.3617 34 1 4.5689 5.1763 -1.9441 35 1 4.0390 6.8804 -2.0098 36 1 5.2406 6.1477 -4.7287 37 1 0.8816 4.3656 -1.5364 38 1 0.9008 6.1037 -1.1115 39 1 1.7816 -2.8378 -1.0130 40 1 2.6329 -3.0875 0.5302 41 1 0.9291 -2.5724 0.5269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046208911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:45 Heat of formation + Delta-G solvation = 62.830944 kcal Electronic energy + Delta-G solvation = -24358.156632 eV Core-core repulsion = 20889.166155 eV Total energy + Delta-G solvation = -3468.990477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.28341 -41.01398 -38.75583 -36.00954 -35.57797 -33.65278 -33.22430 -31.68899 -30.34804 -28.93247 -28.32015 -27.48714 -25.52138 -24.60619 -22.52360 -22.08531 -21.46271 -20.37797 -19.22697 -18.60609 -17.42090 -17.14189 -16.82541 -16.59423 -15.94333 -15.68363 -15.49314 -15.23520 -14.89843 -14.24725 -14.23421 -14.04432 -13.95908 -13.85405 -13.50739 -13.36540 -13.25677 -13.00617 -12.94972 -12.80913 -12.73699 -12.17369 -12.13357 -12.05203 -11.95586 -11.68360 -11.53736 -11.14012 -10.76229 -10.69487 -10.23738 -9.89045 -8.84711 -7.84275 -5.17980 0.12603 0.63672 1.15753 1.41833 1.45436 1.51761 2.16813 2.35032 2.48754 3.20520 3.33775 3.45416 3.61233 3.64612 3.73723 3.82691 4.08002 4.21666 4.30207 4.40800 4.59846 4.65299 4.66641 4.68706 4.73617 4.81634 4.88521 4.92041 4.96802 5.08028 5.10596 5.12275 5.40005 5.43706 5.53808 5.66275 5.70666 5.78893 6.21210 6.53516 6.91459 7.12218 7.24295 7.79408 8.43856 9.25712 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.005117 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.191135 B = 5470.830245 C = 6383.167674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.130 3.870 3 C -0.133 4.133 4 C 0.605 3.395 5 O -0.552 6.552 6 N -0.690 5.690 7 C 0.165 3.835 8 C -0.138 4.138 9 C -0.130 4.130 10 C 0.186 3.814 11 N -0.622 5.622 12 C -0.241 4.241 13 H 0.072 0.928 14 C -0.063 4.063 15 N -0.948 5.948 16 Si 0.974 3.026 17 H -0.275 1.275 18 H -0.291 1.291 19 H -0.283 1.283 20 C 0.129 3.871 21 N -0.229 5.229 22 N -0.097 5.097 23 N -0.354 5.354 24 C 0.073 3.927 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.405 0.595 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.246 0.754 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 -15.134 13.870 22.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.009 4.009 3 C -0.273 4.273 4 C 0.390 3.610 5 O -0.430 6.430 6 N -0.339 5.339 7 C 0.078 3.922 8 C -0.196 4.196 9 C -0.168 4.168 10 C 0.061 3.939 11 N -0.348 5.348 12 C -0.370 4.370 13 H 0.090 0.910 14 C -0.256 4.256 15 N -0.597 5.597 16 Si 0.803 3.197 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.210 1.210 20 C 0.003 3.997 21 N -0.101 5.101 22 N -0.077 5.077 23 N -0.140 5.140 24 C -0.066 4.066 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.240 0.760 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.341 -15.364 13.683 21.844 hybrid contribution -0.043 0.123 -1.525 1.530 sum -7.384 -15.241 12.159 20.848 Atomic orbital electron populations 1.20824 0.82036 1.06560 1.05379 1.22361 0.97533 0.85682 0.95358 1.21419 0.89581 0.95970 1.20361 1.16839 0.85518 0.82866 0.75744 1.90674 1.16193 1.83844 1.52305 1.45654 1.09893 1.05303 1.73055 1.21478 0.95335 0.79906 0.95448 1.21916 1.00216 1.02721 0.94779 1.23110 0.97475 0.99717 0.96533 1.20910 0.87649 0.96627 0.88712 1.44698 1.09150 1.79578 1.01388 1.19321 0.96913 1.38599 0.82149 0.91014 1.25566 0.95740 1.02138 1.02152 1.70165 1.02556 1.53369 1.33586 0.85218 0.76668 0.77811 0.80036 1.20098 1.21656 1.20966 1.22017 0.91850 0.97574 0.88229 1.74559 1.20115 1.04937 1.10518 1.81844 0.98099 1.03080 1.24679 1.50611 1.05173 1.09392 1.48821 1.22722 1.04316 0.73106 1.06455 0.88484 0.88417 0.86489 0.75999 0.90853 0.90212 0.91765 0.88427 0.89173 0.97207 0.97166 0.94446 0.94458 0.95041 0.87769 0.86914 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.58 71.24 0.68 -0.80 16 2 C 0.13 3.22 7.02 41.72 0.29 3.51 16 3 C -0.13 -4.41 6.99 40.82 0.29 -4.13 16 4 C 0.61 22.04 7.21 86.70 0.62 22.66 16 5 O -0.55 -20.67 11.49 -4.02 -0.05 -20.71 16 6 N -0.69 -25.32 5.17 -419.77 -2.17 -27.49 16 7 C 0.16 5.97 0.82 4.99 0.00 5.97 16 8 C -0.14 -3.94 8.62 71.98 0.62 -3.32 16 9 C -0.13 -4.72 5.99 31.78 0.19 -4.53 16 10 C 0.19 9.42 5.36 86.73 0.47 9.89 16 11 N -0.62 -33.79 3.39 -691.97 -2.35 -36.14 16 12 C -0.24 -14.36 10.28 84.03 0.86 -13.50 16 13 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 14 C -0.06 -3.75 5.49 84.86 0.47 -3.28 16 15 N -0.95 -58.87 10.31 21.65 0.22 -58.64 16 16 Si 0.97 48.00 29.55 68.60 2.03 50.03 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 20 C 0.13 5.83 6.11 86.85 0.53 6.36 16 21 N -0.23 -8.03 12.04 -49.99 -0.60 -8.64 16 22 N -0.10 -2.98 13.78 37.02 0.51 -2.47 16 23 N -0.35 -7.66 4.03 -355.10 -1.43 -9.10 16 24 C 0.07 0.58 11.33 127.77 1.45 2.03 16 25 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.10 2.02 6.43 -2.39 -0.02 2.01 16 27 H 0.12 0.84 7.17 -2.38 -0.02 0.82 16 28 H 0.40 14.79 8.18 -92.71 -0.76 14.03 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 2.04 8.13 -2.39 -0.02 2.02 16 31 H 0.06 1.97 6.45 -2.39 -0.02 1.95 16 32 H 0.10 3.11 8.04 -2.39 -0.02 3.09 16 33 H 0.09 2.85 8.05 -2.39 -0.02 2.83 16 34 H 0.01 0.55 7.38 -2.39 -0.02 0.54 16 35 H 0.01 0.57 7.51 -2.39 -0.02 0.55 16 36 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.04 1.81 6.31 -2.39 -0.02 1.80 16 38 H 0.03 1.39 8.03 -2.38 -0.02 1.37 16 39 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.13 0.15 7.15 -2.39 -0.02 0.13 16 Total: -1.00 -79.99 333.41 2.93 -77.06 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.30 Total: 15.25 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 6.47 Total: 20.86 kcal Atomic # 7 Polarization: -136.66 SS G_CDS: -5.82 Total: -142.48 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.71 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -79.99 2.93 -77.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046208911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.891 kcal (2) G-P(sol) polarization free energy of solvation -79.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds