Wall clock time and date at job start Tue Mar 31 2020 03:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 120.00402 * 2 1 4 4 O 1.21625 * 120.00550 * 186.27550 * 3 2 1 5 5 C 1.47268 * 119.99848 * 6.27748 * 3 2 1 6 6 C 1.46689 * 126.93826 * 7.75147 * 5 3 2 7 7 C 1.34490 * 106.32852 * 179.97438 * 6 5 3 8 8 N 1.36449 * 108.85711 * 0.02562 * 7 6 5 9 9 C 1.46501 * 124.84712 * 179.97438 * 8 7 6 10 10 C 1.34658 * 110.29882 * 359.74245 * 8 7 6 11 11 C 1.46506 * 120.00016 * 179.97438 * 2 1 3 12 12 H 1.08998 * 110.88817 * 180.69792 * 11 2 1 13 13 C 1.54906 * 111.00398 * 304.58283 * 11 2 1 14 14 N 1.47426 * 104.83182 * 155.11750 * 13 11 2 15 15 C 1.36935 * 125.64725 * 155.83778 * 14 13 11 16 16 H 1.08001 * 120.00378 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00007 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99601 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00229 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46864 * 60.00282 * 19 17 15 21 21 H 1.48497 * 109.47176 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47227 * 300.00161 * 19 17 15 23 23 C 1.47022 * 108.70353 * 335.87318 * 14 13 11 24 24 C 1.54326 * 107.26958 * 1.05789 * 23 14 13 25 25 H 1.08997 * 110.71860 * 263.82446 * 24 23 14 26 26 O 1.42902 * 110.71759 * 140.55616 * 24 23 14 27 27 H 1.08998 * 109.46987 * 275.86035 * 1 2 3 28 28 H 1.09001 * 109.46743 * 35.85678 * 1 2 3 29 29 H 1.08993 * 109.47100 * 155.85728 * 1 2 3 30 30 H 1.07992 * 126.83852 * 0.02562 * 6 5 3 31 31 H 1.08000 * 125.57082 * 179.97438 * 7 6 5 32 32 H 1.08991 * 109.47373 * 90.02533 * 9 8 7 33 33 H 1.09006 * 109.46644 * 210.01867 * 9 8 7 34 34 H 1.09000 * 109.47144 * 330.01794 * 9 8 7 35 35 H 1.08001 * 125.80483 * 180.29210 * 10 8 7 36 36 H 1.08995 * 110.37021 * 273.95632 * 13 11 2 37 37 H 1.08998 * 110.36802 * 36.17459 * 13 11 2 38 38 H 0.97006 * 119.99494 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.88012 * 120.47463 * 23 14 13 40 40 H 1.08999 * 109.88085 * 241.63986 * 23 14 13 41 41 H 0.96704 * 114.00305 * 66.47747 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3497 1.1703 -0.1151 5 6 1.4093 2.4387 0.1395 6 6 -0.0156 2.6087 0.4436 7 6 -0.2402 3.9343 0.4743 8 7 0.9299 4.5860 0.2134 9 6 1.0833 6.0420 0.1603 10 6 1.9244 3.6998 0.0167 11 6 2.1975 -1.2688 0.0006 12 1 3.2737 -1.0962 0.0129 13 6 1.7643 -2.1595 1.1916 14 7 2.0625 -3.5374 0.7604 15 6 2.2936 -4.6012 1.5911 16 1 2.2656 -4.4660 2.6622 17 6 2.5650 -5.8532 1.0564 18 7 2.6006 -6.0176 -0.2490 19 14 2.8810 -7.3042 2.1895 20 1 1.6901 -7.5309 3.0473 21 1 3.1434 -8.5190 1.3767 22 1 4.0599 -7.0164 3.0453 23 6 2.0714 -3.5800 -0.7092 24 6 1.7892 -2.1481 -1.2108 25 1 0.7312 -2.0214 -1.4402 26 8 2.5951 -1.8438 -2.3509 27 1 -0.3633 0.1049 1.0223 28 1 -0.3633 0.8329 -0.6020 29 1 -0.3633 -0.9377 -0.4203 30 1 -0.7400 1.8253 0.6106 31 1 -1.1914 4.4060 0.6722 32 1 1.3380 6.4169 1.1515 33 1 1.8780 6.2982 -0.5404 34 1 0.1480 6.4941 -0.1700 35 1 2.9535 3.9432 -0.2024 36 1 2.3397 -1.9079 2.0825 37 1 0.6978 -2.0430 1.3842 38 1 2.7898 -6.8926 -0.6227 39 1 3.0470 -3.9117 -1.0645 40 1 1.2950 -4.2573 -1.0651 41 1 2.3800 -2.3665 -3.1356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047346985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:03 Heat of formation + Delta-G solvation = 23.872879 kcal Electronic energy + Delta-G solvation = -23885.931515 eV Core-core repulsion = 20382.958938 eV Total energy + Delta-G solvation = -3502.972577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34702 -39.36688 -37.53577 -35.08100 -34.68546 -32.98110 -31.70951 -29.29524 -28.69934 -27.50143 -26.61863 -26.40502 -24.33805 -22.27395 -20.60470 -20.32046 -19.67808 -18.92653 -17.34273 -16.97289 -16.76733 -15.84679 -15.59824 -15.46408 -14.74137 -14.60030 -14.20384 -13.89513 -13.75451 -13.31605 -12.98422 -12.84198 -12.71676 -12.62006 -12.40761 -12.26379 -12.06640 -11.97872 -11.32550 -11.22908 -11.13169 -10.80289 -10.73992 -10.12902 -9.83990 -9.74467 -9.51533 -9.15761 -8.68134 -8.64489 -8.46292 -8.09331 -6.85607 -5.70959 -3.05921 1.83701 2.35841 2.66415 3.40425 3.43833 3.47022 3.48795 3.79158 4.42870 4.50394 4.74518 4.77693 4.79378 4.89890 5.02685 5.13764 5.35219 5.37516 5.42436 5.49164 5.61955 5.72072 5.79202 5.82739 5.89407 5.92301 6.05230 6.20629 6.24320 6.59954 6.66478 6.75954 6.88969 7.08042 7.12156 7.42456 7.54183 7.78140 7.86016 8.22944 8.30688 8.65817 9.19788 9.80038 10.44027 11.40305 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033636 B = 0.003417 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.246111 B = 8191.586691 C = 8443.588748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.596 5.596 3 C 0.590 3.410 4 O -0.551 6.551 5 C -0.223 4.223 6 C -0.180 4.180 7 C -0.024 4.024 8 N -0.450 5.450 9 C 0.070 3.930 10 C 0.069 3.931 11 C 0.136 3.864 12 H 0.114 0.886 13 C 0.132 3.868 14 N -0.599 5.599 15 C -0.229 4.229 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.153 3.847 24 C 0.064 3.936 25 H 0.056 0.944 26 O -0.559 6.559 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.047 0.953 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 21.887 -1.478 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.327 5.327 3 C 0.380 3.620 4 O -0.430 6.430 5 C -0.233 4.233 6 C -0.203 4.203 7 C -0.151 4.151 8 N -0.126 5.126 9 C -0.072 4.072 10 C -0.066 4.066 11 C 0.031 3.969 12 H 0.132 0.868 13 C 0.005 3.995 14 N -0.327 5.327 15 C -0.357 4.357 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.028 3.972 24 C 0.004 3.996 25 H 0.073 0.927 26 O -0.363 6.363 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.190 0.810 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.618 22.435 -1.155 23.721 hybrid contribution -0.277 -1.218 0.179 1.262 sum -7.895 21.216 -0.976 22.658 Atomic orbital electron populations 1.22266 0.80382 1.03189 1.01406 1.47444 1.06562 1.05554 1.73137 1.17379 0.86281 0.82630 0.75737 1.90757 1.14026 1.87249 1.50977 1.20410 0.94507 0.92443 1.15977 1.22790 0.95161 0.95449 1.06930 1.21811 0.90268 0.92679 1.10303 1.43617 1.08240 1.06550 1.54214 1.22090 1.04139 0.77485 1.03469 1.21764 0.93859 0.87954 1.03002 1.22346 0.98492 0.81300 0.94715 0.86848 1.21773 0.97623 0.85490 0.94624 1.44234 1.83507 1.03248 1.01725 1.19034 1.41486 0.86223 0.89003 0.90220 1.24821 1.01779 0.97669 0.96091 1.69937 1.55297 1.22585 1.09199 0.86149 0.78135 0.81804 0.79367 1.21140 1.21585 1.21074 1.21831 1.01775 0.89462 0.84159 1.23574 0.92756 0.97367 0.85909 0.92674 1.86523 1.62389 1.65409 1.22024 0.92435 0.90174 0.91074 0.82198 0.81798 0.90776 0.89696 0.89720 0.80954 0.93453 0.95672 0.93631 0.92210 0.93535 0.78211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 7.32 59.85 0.44 1.37 16 2 N -0.60 -10.46 2.91 -172.81 -0.50 -10.96 16 3 C 0.59 10.87 7.65 -12.59 -0.10 10.77 16 4 O -0.55 -12.20 16.32 5.26 0.09 -12.11 16 5 C -0.22 -3.23 6.04 -103.35 -0.62 -3.86 16 6 C -0.18 -2.01 8.84 -37.50 -0.33 -2.34 16 7 C -0.02 -0.22 11.34 -16.82 -0.19 -0.41 16 8 N -0.45 -4.08 3.09 -124.53 -0.38 -4.46 16 9 C 0.07 0.32 11.03 59.85 0.66 0.98 16 10 C 0.07 0.84 11.13 -16.84 -0.19 0.65 16 11 C 0.14 2.82 3.17 -65.78 -0.21 2.61 16 12 H 0.11 2.73 7.03 -51.93 -0.37 2.36 16 13 C 0.13 2.90 6.81 -2.53 -0.02 2.88 16 14 N -0.60 -15.73 3.39 -170.07 -0.58 -16.31 16 15 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.26 10.31 55.49 0.57 -26.69 16 19 Si 0.92 22.33 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.15 3.81 5.15 -3.06 -0.02 3.79 16 24 C 0.06 1.31 3.86 -24.90 -0.10 1.22 16 25 H 0.06 1.02 6.26 -51.93 -0.33 0.69 16 26 O -0.56 -11.16 13.39 -35.23 -0.47 -11.63 16 27 H 0.06 0.67 7.31 -51.93 -0.38 0.29 16 28 H 0.08 0.91 5.38 -51.93 -0.28 0.63 16 29 H 0.07 0.95 6.27 -51.93 -0.33 0.62 16 30 H 0.16 1.52 4.82 -52.49 -0.25 1.27 16 31 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 34 H 0.08 0.23 8.13 -51.93 -0.42 -0.19 16 35 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.52 7.14 -51.93 -0.37 0.15 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.06 1.68 7.29 -51.93 -0.38 1.30 16 40 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 41 H 0.37 5.72 9.12 45.56 0.42 6.14 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -36.64 331.32 -6.96 -43.60 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.73 Total: 5.56 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -0.92 Total: 10.70 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.89 Total: -58.42 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.39 Total: -23.74 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.64 -6.96 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047346985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.477 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds