Wall clock time and date at job start Tue Mar 31 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99969 * 2 1 4 4 O 1.21279 * 119.99826 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00087 * 359.97438 * 3 2 1 6 6 C 1.50702 * 109.46990 * 179.97438 * 5 3 2 7 7 C 1.34855 * 125.88591 * 85.00440 * 6 5 3 8 8 C 1.40891 * 107.41665 * 179.97438 * 7 6 5 9 9 C 1.34851 * 107.41371 * 0.02562 * 8 7 6 10 10 N 1.36337 * 125.89441 * 264.95838 * 6 5 3 11 11 H 0.97006 * 125.63414 * 0.06306 * 10 6 5 12 12 C 1.46498 * 120.00089 * 180.02562 * 2 1 3 13 13 H 1.08998 * 110.64183 * 183.14397 * 12 2 1 14 14 C 1.54334 * 110.71787 * 306.47634 * 12 2 1 15 15 N 1.47021 * 107.27049 * 140.55803 * 14 12 2 16 16 C 1.36936 * 125.64618 * 181.02422 * 15 14 12 17 17 H 1.07998 * 119.99861 * 162.08584 * 16 15 14 18 18 C 1.38815 * 119.99995 * 342.08915 * 16 15 14 19 19 N 1.31621 * 120.00050 * 156.31169 * 18 16 15 20 20 Si 1.86791 * 120.00032 * 336.30911 * 18 16 15 21 21 H 1.48503 * 109.47111 * 84.67698 * 20 18 16 22 22 H 1.48494 * 109.47305 * 204.67313 * 20 18 16 23 23 H 1.48499 * 109.47346 * 324.67914 * 20 18 16 24 24 C 1.47424 * 108.70220 * 1.05546 * 15 14 12 25 25 C 1.54907 * 104.83707 * 335.87418 * 24 15 14 26 26 H 1.09000 * 111.00152 * 278.93617 * 25 24 15 27 27 O 1.42901 * 111.00524 * 155.08010 * 25 24 15 28 28 H 1.08998 * 109.47071 * 89.99893 * 1 2 3 29 29 H 1.09003 * 109.47388 * 210.00162 * 1 2 3 30 30 H 1.09006 * 109.46941 * 330.00036 * 1 2 3 31 31 H 1.09004 * 109.46840 * 60.00532 * 5 3 2 32 32 H 1.08995 * 109.47441 * 300.00194 * 5 3 2 33 33 H 1.07996 * 126.29050 * 0.22685 * 7 6 5 34 34 H 1.07996 * 126.29125 * 180.02562 * 8 7 6 35 35 H 1.07999 * 125.88573 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.87899 * 259.97251 * 14 12 2 37 37 H 1.09001 * 109.88146 * 21.13924 * 14 12 2 38 38 H 0.96998 * 120.00096 * 179.97438 * 19 18 16 39 39 H 1.09000 * 110.36615 * 217.03570 * 24 15 14 40 40 H 1.09000 * 110.45989 * 94.76509 * 24 15 14 41 41 H 0.96700 * 113.99764 * 67.80772 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3647 3.6177 0.0002 7 6 2.9516 4.1567 -1.0878 8 6 3.7897 5.1981 -0.6426 9 6 3.6834 5.2553 0.7005 10 7 2.8096 4.2884 1.1007 11 1 2.5483 4.1067 2.0171 12 6 2.1975 -1.2687 -0.0006 13 1 3.2716 -1.0922 0.0555 14 6 1.7273 -2.1711 1.1598 15 7 1.6778 -3.5488 0.6488 16 6 1.2886 -4.6510 1.3621 17 1 1.0078 -5.5570 0.8456 18 6 1.2551 -4.6039 2.7491 19 7 0.4766 -5.4287 3.4170 20 14 2.3148 -3.3700 3.6675 21 1 1.6062 -2.0670 3.7413 22 1 2.5776 -3.8688 5.0413 23 1 3.6030 -3.1929 2.9503 24 6 2.1171 -3.5471 -0.7585 25 6 1.8435 -2.1064 -1.2577 26 1 0.7956 -1.9795 -1.5294 27 8 2.6987 -1.7728 -2.3529 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 0.7584 2.5303 0.8892 32 1 0.7591 2.5299 -0.8907 33 1 2.8030 3.8495 -2.1124 34 1 4.4042 5.8336 -1.2629 35 1 4.2010 5.9481 1.3476 36 1 2.4333 -2.1081 1.9879 37 1 0.7357 -1.8627 1.4909 38 1 0.4535 -5.3960 4.3861 39 1 1.5373 -4.2658 -1.3377 40 1 3.1806 -3.7765 -0.8259 41 1 2.5152 -2.2711 -3.1611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047634339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:58 Heat of formation + Delta-G solvation = 11.562224 kcal Electronic energy + Delta-G solvation = -24101.015113 eV Core-core repulsion = 20597.508706 eV Total energy + Delta-G solvation = -3503.506407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21630 -39.90967 -38.07258 -35.53897 -34.90047 -32.36788 -31.78195 -30.93514 -29.21067 -27.95094 -26.93798 -26.33917 -24.10798 -21.42068 -20.70291 -20.60861 -20.14501 -19.09926 -17.68775 -17.49141 -17.16340 -16.63334 -15.94760 -15.55638 -15.11652 -14.28338 -14.11762 -13.85591 -13.74909 -13.53666 -13.44420 -13.15685 -12.82432 -12.73760 -12.45191 -12.33622 -12.26249 -12.13661 -12.06215 -11.72880 -11.62844 -11.11420 -10.70583 -10.39381 -10.18620 -9.92143 -9.62421 -9.44235 -8.84898 -8.74133 -8.44656 -8.05623 -7.20391 -6.05301 -3.35859 2.15710 2.70881 2.90524 3.16471 3.26547 3.32340 3.43000 3.46808 4.26090 4.45991 4.57681 4.74270 4.88509 4.92857 5.03019 5.12367 5.15606 5.26936 5.28607 5.30052 5.43327 5.49179 5.51295 5.69835 5.70080 5.76047 5.84322 6.20046 6.27373 6.29560 6.31634 6.40411 6.55615 6.73562 6.96548 7.10261 7.44719 7.53964 7.56660 7.84778 8.20052 8.28178 8.70672 9.57343 10.02348 11.10570 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.004433 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.246583 B = 6314.600122 C = 7065.791902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.604 5.604 3 C 0.513 3.487 4 O -0.524 6.524 5 C -0.069 4.069 6 C 0.033 3.967 7 C -0.180 4.180 8 C -0.201 4.201 9 C -0.014 4.014 10 N -0.553 5.553 11 H 0.411 0.589 12 C 0.138 3.862 13 H 0.114 0.886 14 C 0.114 3.886 15 N -0.604 5.604 16 C -0.246 4.246 17 H 0.097 0.903 18 C 0.026 3.974 19 N -0.903 5.903 20 Si 0.882 3.118 21 H -0.287 1.287 22 H -0.301 1.301 23 H -0.278 1.278 24 C 0.105 3.895 25 C 0.079 3.921 26 H 0.070 0.930 27 O -0.557 6.557 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.162 0.838 36 H 0.035 0.965 37 H 0.051 0.949 38 H 0.265 0.735 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 18.297 -8.337 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.337 5.337 3 C 0.300 3.700 4 O -0.399 6.399 5 C -0.110 4.110 6 C -0.080 4.080 7 C -0.204 4.204 8 C -0.226 4.226 9 C -0.145 4.145 10 N -0.148 5.148 11 H 0.247 0.753 12 C 0.034 3.966 13 H 0.132 0.868 14 C -0.012 4.012 15 N -0.332 5.332 16 C -0.372 4.372 17 H 0.114 0.886 18 C -0.173 4.173 19 N -0.546 5.546 20 Si 0.714 3.286 21 H -0.215 1.215 22 H -0.229 1.229 23 H -0.204 1.204 24 C -0.021 4.021 25 C 0.018 3.982 26 H 0.088 0.912 27 O -0.361 6.361 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.179 0.821 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.450 18.539 -7.544 20.021 hybrid contribution 0.231 0.073 0.747 0.785 sum -0.219 18.612 -6.798 19.816 Atomic orbital electron populations 1.21924 0.79541 1.04048 1.02103 1.47740 1.06956 1.05571 1.73478 1.20509 0.88194 0.84863 0.76441 1.90731 1.13769 1.86968 1.48436 1.20166 0.96451 0.89063 1.05293 1.19539 1.03438 0.98031 0.86952 1.20612 1.02073 1.00087 0.97658 1.20850 1.05091 1.02692 0.93994 1.21754 0.99368 0.97114 0.96276 1.41887 1.36423 1.28094 1.08409 0.75304 1.22057 0.98572 0.82064 0.93922 0.86792 1.21947 0.99495 0.85449 0.94292 1.44579 1.77942 1.02137 1.08554 1.18651 1.38355 0.91626 0.88603 0.88563 1.24924 0.98809 0.97566 0.95996 1.69842 1.36922 1.40317 1.07515 0.87011 0.82571 0.80543 0.78498 1.21482 1.22880 1.20450 1.22253 0.98399 0.94175 0.87267 1.23367 0.93134 0.95137 0.86519 0.91210 1.86550 1.60346 1.66555 1.22638 0.92311 0.89552 0.91038 0.88450 0.86769 0.85029 0.84901 0.82110 0.94808 0.93100 0.92550 0.92650 0.94458 0.77910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.10 59.85 0.54 1.31 16 2 N -0.60 -9.31 2.89 -171.83 -0.50 -9.81 16 3 C 0.51 8.04 7.67 -10.98 -0.08 7.96 16 4 O -0.52 -10.55 15.41 5.56 0.09 -10.46 16 5 C -0.07 -0.76 4.79 -29.03 -0.14 -0.90 16 6 C 0.03 0.42 5.66 -81.79 -0.46 -0.05 16 7 C -0.18 -2.36 10.77 -39.78 -0.43 -2.79 16 8 C -0.20 -2.42 10.86 -39.78 -0.43 -2.85 16 9 C -0.01 -0.15 11.94 -16.75 -0.20 -0.35 16 10 N -0.55 -6.10 6.07 -9.12 -0.06 -6.16 16 11 H 0.41 3.50 8.96 -40.82 -0.37 3.14 16 12 C 0.14 2.59 3.10 -66.09 -0.20 2.38 16 13 H 0.11 2.44 7.00 -51.93 -0.36 2.08 16 14 C 0.11 2.49 4.72 -3.06 -0.01 2.47 16 15 N -0.60 -14.32 3.21 -170.07 -0.55 -14.87 16 16 C -0.25 -6.80 10.56 -15.06 -0.16 -6.96 16 17 H 0.10 2.78 8.06 -52.49 -0.42 2.36 16 18 C 0.03 0.75 5.43 -17.43 -0.09 0.66 16 19 N -0.90 -27.23 13.97 55.49 0.78 -26.45 16 20 Si 0.88 22.83 24.39 -169.99 -4.15 18.68 16 21 H -0.29 -7.14 6.84 56.52 0.39 -6.75 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 23 H -0.28 -7.31 6.87 56.52 0.39 -6.92 16 24 C 0.11 2.04 6.97 -2.53 -0.02 2.02 16 25 C 0.08 1.32 4.00 -24.58 -0.10 1.22 16 26 H 0.07 1.05 7.29 -51.93 -0.38 0.67 16 27 O -0.56 -8.64 13.47 -35.23 -0.47 -9.12 16 28 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.09 1.13 6.08 -51.93 -0.32 0.81 16 30 H 0.07 0.60 6.44 -51.93 -0.33 0.26 16 31 H 0.10 0.82 7.40 -51.93 -0.38 0.44 16 32 H 0.11 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.03 0.84 3.53 -51.93 -0.18 0.65 16 37 H 0.05 1.10 5.93 -51.93 -0.31 0.79 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.37 3.90 9.12 45.56 0.42 4.32 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -36.50 330.55 -6.43 -42.92 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.76 Total: 6.15 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.79 Total: 4.13 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.32 Total: -57.29 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.39 Total: -19.58 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.15 Total: 18.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -36.50 -6.43 -42.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047634339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.486 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds