Wall clock time and date at job start Tue Mar 31 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99969 * 2 1 4 4 O 1.21279 * 119.99826 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00087 * 359.97438 * 3 2 1 6 6 C 1.50702 * 109.46990 * 179.97438 * 5 3 2 7 7 C 1.34855 * 125.88591 * 85.00440 * 6 5 3 8 8 C 1.40891 * 107.41665 * 179.97438 * 7 6 5 9 9 C 1.34851 * 107.41371 * 0.02562 * 8 7 6 10 10 N 1.36337 * 125.89441 * 264.95838 * 6 5 3 11 11 H 0.97006 * 125.63414 * 0.06306 * 10 6 5 12 12 C 1.46498 * 120.00089 * 180.02562 * 2 1 3 13 13 H 1.08998 * 110.64183 * 183.14397 * 12 2 1 14 14 C 1.54334 * 110.71787 * 306.47634 * 12 2 1 15 15 N 1.47021 * 107.27049 * 140.55803 * 14 12 2 16 16 C 1.36936 * 125.64618 * 181.02422 * 15 14 12 17 17 H 1.07998 * 119.99861 * 162.08584 * 16 15 14 18 18 C 1.38815 * 119.99995 * 342.08915 * 16 15 14 19 19 N 1.31621 * 120.00050 * 156.31169 * 18 16 15 20 20 Si 1.86791 * 120.00032 * 336.30911 * 18 16 15 21 21 H 1.48503 * 109.47111 * 84.67698 * 20 18 16 22 22 H 1.48494 * 109.47305 * 204.67313 * 20 18 16 23 23 H 1.48499 * 109.47346 * 324.67914 * 20 18 16 24 24 C 1.47424 * 108.70220 * 1.05546 * 15 14 12 25 25 C 1.54907 * 104.83707 * 335.87418 * 24 15 14 26 26 H 1.09000 * 111.00152 * 278.93617 * 25 24 15 27 27 O 1.42901 * 111.00524 * 155.08010 * 25 24 15 28 28 H 1.08998 * 109.47071 * 89.99893 * 1 2 3 29 29 H 1.09003 * 109.47388 * 210.00162 * 1 2 3 30 30 H 1.09006 * 109.46941 * 330.00036 * 1 2 3 31 31 H 1.09004 * 109.46840 * 60.00532 * 5 3 2 32 32 H 1.08995 * 109.47441 * 300.00194 * 5 3 2 33 33 H 1.07996 * 126.29050 * 0.22685 * 7 6 5 34 34 H 1.07996 * 126.29125 * 180.02562 * 8 7 6 35 35 H 1.07999 * 125.88573 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.87899 * 259.97251 * 14 12 2 37 37 H 1.09001 * 109.88146 * 21.13924 * 14 12 2 38 38 H 0.96998 * 120.00096 * 179.97438 * 19 18 16 39 39 H 1.09000 * 110.36615 * 217.03570 * 24 15 14 40 40 H 1.09000 * 110.45989 * 94.76509 * 24 15 14 41 41 H 0.96700 * 113.99764 * 67.80772 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3647 3.6177 0.0002 7 6 2.9516 4.1567 -1.0878 8 6 3.7897 5.1981 -0.6426 9 6 3.6834 5.2553 0.7005 10 7 2.8096 4.2884 1.1007 11 1 2.5483 4.1067 2.0171 12 6 2.1975 -1.2687 -0.0006 13 1 3.2716 -1.0922 0.0555 14 6 1.7273 -2.1711 1.1598 15 7 1.6778 -3.5488 0.6488 16 6 1.2886 -4.6510 1.3621 17 1 1.0078 -5.5570 0.8456 18 6 1.2551 -4.6039 2.7491 19 7 0.4766 -5.4287 3.4170 20 14 2.3148 -3.3700 3.6675 21 1 1.6062 -2.0670 3.7413 22 1 2.5776 -3.8688 5.0413 23 1 3.6030 -3.1929 2.9503 24 6 2.1171 -3.5471 -0.7585 25 6 1.8435 -2.1064 -1.2577 26 1 0.7956 -1.9795 -1.5294 27 8 2.6987 -1.7728 -2.3529 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 0.7584 2.5303 0.8892 32 1 0.7591 2.5299 -0.8907 33 1 2.8030 3.8495 -2.1124 34 1 4.4042 5.8336 -1.2629 35 1 4.2010 5.9481 1.3476 36 1 2.4333 -2.1081 1.9879 37 1 0.7357 -1.8627 1.4909 38 1 0.4535 -5.3960 4.3861 39 1 1.5373 -4.2658 -1.3377 40 1 3.1806 -3.7765 -0.8259 41 1 2.5152 -2.2711 -3.1611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047634339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:57 Heat of formation + Delta-G solvation = -17.985506 kcal Electronic energy + Delta-G solvation = -24102.296399 eV Core-core repulsion = 20597.508706 eV Total energy + Delta-G solvation = -3504.787693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10509 -41.16456 -39.49233 -36.93142 -36.31882 -34.18733 -32.97821 -31.78904 -30.79804 -29.51720 -27.93376 -27.45447 -25.86598 -22.89584 -22.28551 -21.48240 -21.09302 -20.29812 -19.19669 -18.87830 -18.42752 -17.80244 -17.49791 -16.87097 -16.56659 -15.93299 -15.40196 -15.34887 -14.81783 -14.73624 -14.50494 -14.31619 -14.22670 -14.08915 -13.79994 -13.72837 -13.47251 -13.38705 -13.18231 -13.07699 -12.96608 -12.59513 -12.43835 -12.25671 -11.88007 -11.50500 -11.22035 -10.89426 -10.80223 -9.71799 -9.70059 -9.20019 -8.92223 -8.26415 -5.52360 1.18464 1.24845 1.31214 1.38721 1.56423 1.88203 2.19412 2.31164 2.52831 2.81783 3.06482 3.34446 3.57997 3.61073 3.82057 3.90254 3.99306 4.14269 4.18190 4.30547 4.38125 4.45084 4.49548 4.54673 4.65035 4.70379 4.80053 4.83797 4.86735 4.96056 5.03461 5.35172 5.41842 5.42847 5.55913 6.02766 6.09603 6.22916 6.34895 6.62799 6.80206 6.85646 7.12381 7.43088 7.96859 8.93160 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020444 B = 0.004433 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.246583 B = 6314.600122 C = 7065.791902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.604 5.604 3 C 0.508 3.492 4 O -0.578 6.578 5 C -0.058 4.058 6 C 0.017 3.983 7 C -0.206 4.206 8 C -0.228 4.228 9 C -0.011 4.011 10 N -0.552 5.552 11 H 0.422 0.578 12 C 0.143 3.857 13 H 0.081 0.919 14 C 0.114 3.886 15 N -0.619 5.619 16 C -0.233 4.233 17 H 0.076 0.924 18 C -0.021 4.021 19 N -0.943 5.943 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.304 1.304 23 H -0.292 1.292 24 C 0.100 3.900 25 C 0.103 3.897 26 H 0.097 0.903 27 O -0.566 6.566 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.144 0.856 35 H 0.192 0.808 36 H 0.008 0.992 37 H 0.058 0.942 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 20.572 -9.186 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.336 5.336 3 C 0.298 3.702 4 O -0.457 6.457 5 C -0.098 4.098 6 C -0.096 4.096 7 C -0.231 4.231 8 C -0.252 4.252 9 C -0.143 4.143 10 N -0.148 5.148 11 H 0.260 0.740 12 C 0.038 3.962 13 H 0.100 0.900 14 C -0.011 4.011 15 N -0.347 5.347 16 C -0.362 4.362 17 H 0.094 0.906 18 C -0.217 4.217 19 N -0.589 5.589 20 Si 0.767 3.233 21 H -0.199 1.199 22 H -0.232 1.232 23 H -0.219 1.219 24 C -0.025 4.025 25 C 0.042 3.958 26 H 0.115 0.885 27 O -0.374 6.374 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.162 0.838 35 H 0.209 0.791 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.632 20.835 -8.430 22.535 hybrid contribution 0.635 -0.655 0.892 1.275 sum -0.997 20.181 -7.538 21.566 Atomic orbital electron populations 1.22239 0.76740 1.05021 1.04193 1.47842 1.08527 1.04207 1.73035 1.21379 0.87838 0.86100 0.74920 1.90709 1.16345 1.87735 1.50907 1.20237 0.95954 0.85364 1.08198 1.19799 1.04055 0.98582 0.87198 1.20874 1.03004 1.01040 0.98164 1.21167 1.05794 1.03215 0.95064 1.22289 0.98583 0.96982 0.96396 1.41993 1.36133 1.27851 1.08823 0.74006 1.21646 0.97243 0.83535 0.93805 0.90035 1.21921 0.99100 0.85172 0.94938 1.44662 1.77891 1.02065 1.10083 1.18655 1.36567 0.92139 0.88791 0.90616 1.25380 1.00006 0.99477 0.96841 1.69922 1.38741 1.42561 1.07699 0.86137 0.80635 0.79569 0.76981 1.19866 1.23214 1.21946 1.22462 0.97969 0.96917 0.85182 1.23080 0.94440 0.92135 0.86180 0.88514 1.86517 1.60428 1.67003 1.23447 0.89639 0.91255 0.87395 0.85238 0.83807 0.85139 0.83836 0.79093 0.97502 0.92393 0.92576 0.91035 0.95391 0.75086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 9.10 127.77 1.16 2.27 16 2 N -0.60 -17.09 2.89 -815.93 -2.35 -19.44 16 3 C 0.51 14.86 7.67 87.66 0.67 15.54 16 4 O -0.58 -23.07 15.41 -3.03 -0.05 -23.12 16 5 C -0.06 -1.06 4.79 29.10 0.14 -0.92 16 6 C 0.02 0.39 5.66 41.08 0.23 0.62 16 7 C -0.21 -5.19 10.77 22.14 0.24 -4.95 16 8 C -0.23 -5.21 10.86 22.14 0.24 -4.97 16 9 C -0.01 -0.21 11.94 83.21 0.99 0.78 16 10 N -0.55 -10.95 6.07 -182.77 -1.11 -12.06 16 11 H 0.42 6.13 8.96 -92.70 -0.83 5.30 16 12 C 0.14 5.21 3.10 46.18 0.14 5.35 16 13 H 0.08 3.53 7.00 -2.39 -0.02 3.51 16 14 C 0.11 4.91 4.72 86.73 0.41 5.32 16 15 N -0.62 -29.12 3.21 -691.97 -2.22 -31.34 16 16 C -0.23 -13.01 10.56 84.03 0.89 -12.13 16 17 H 0.08 4.46 8.06 -2.91 -0.02 4.44 16 18 C -0.02 -1.23 5.43 84.86 0.46 -0.76 16 19 N -0.94 -57.74 13.97 21.65 0.30 -57.44 16 20 Si 0.93 47.98 24.39 68.60 1.67 49.66 16 21 H -0.27 -13.08 6.84 99.48 0.68 -12.40 16 22 H -0.30 -15.55 7.11 99.48 0.71 -14.85 16 23 H -0.29 -15.43 6.87 99.48 0.68 -14.75 16 24 C 0.10 3.76 6.97 86.85 0.61 4.37 16 25 C 0.10 3.18 4.00 31.99 0.13 3.31 16 26 H 0.10 2.53 7.29 -2.39 -0.02 2.51 16 27 O -0.57 -16.18 13.47 -148.98 -2.01 -18.19 16 28 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 29 H 0.07 1.58 6.08 -2.39 -0.01 1.57 16 30 H 0.11 1.24 6.44 -2.38 -0.02 1.22 16 31 H 0.13 1.55 7.40 -2.38 -0.02 1.53 16 32 H 0.14 1.80 8.11 -2.39 -0.02 1.78 16 33 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.01 0.37 3.53 -2.39 -0.01 0.36 16 37 H 0.06 2.41 5.93 -2.39 -0.01 2.40 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.40 7.03 9.12 -74.06 -0.68 6.35 16 Total: -1.00 -81.72 330.55 0.07 -81.65 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -0.48 Total: 16.47 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.31 Total: 13.82 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -5.38 Total: -120.29 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -2.05 Total: -41.31 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.67 Total: 49.66 kcal Total: -81.72 0.07 -81.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047634339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.663 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds