Wall clock time and date at job start Tue Mar 31 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35530 * 125.68165 * 2 1 4 4 C 1.35447 * 108.87525 * 179.97438 * 3 2 1 5 5 C 1.39832 * 107.86318 * 0.02562 * 4 3 2 6 6 C 1.37655 * 125.67631 * 179.69450 * 2 1 3 7 7 C 1.46681 * 126.23354 * 0.02562 * 6 2 1 8 8 O 1.21700 * 119.99707 * 5.78860 * 7 6 2 9 9 N 1.34775 * 120.00258 * 185.78138 * 7 6 2 10 10 C 1.46494 * 120.00400 * 184.91995 * 9 7 6 11 11 C 1.52996 * 109.47342 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.67623 * 298.07202 * 11 10 9 13 13 C 1.53299 * 109.68370 * 177.56115 * 11 10 9 14 14 O 1.42960 * 109.22370 * 187.97159 * 13 11 10 15 15 C 1.42970 * 114.16728 * 62.57811 * 14 13 11 16 16 C 1.53297 * 109.21998 * 297.42240 * 15 14 13 17 17 N 1.47151 * 109.68635 * 58.59013 * 11 10 9 18 18 C 1.36941 * 120.98121 * 350.24035 * 17 11 10 19 19 H 1.08000 * 119.99841 * 32.21446 * 18 17 11 20 20 C 1.38809 * 120.00011 * 212.21862 * 18 17 11 21 21 N 1.31618 * 119.99743 * 214.69459 * 20 18 17 22 22 Si 1.86796 * 120.00289 * 34.69586 * 20 18 17 23 23 H 1.48503 * 109.47047 * 92.51246 * 22 20 18 24 24 H 1.48496 * 109.47580 * 212.51540 * 22 20 18 25 25 H 1.48507 * 109.47122 * 332.51835 * 22 20 18 26 26 H 1.09001 * 109.47086 * 90.36392 * 1 2 3 27 27 H 1.08994 * 109.46891 * 330.36029 * 1 2 3 28 28 H 1.09001 * 109.47111 * 210.35635 * 1 2 3 29 29 H 1.08008 * 125.55666 * 359.97438 * 3 2 1 30 30 H 1.08002 * 126.07026 * 179.97438 * 4 3 2 31 31 H 1.08009 * 126.45527 * 180.02562 * 5 4 3 32 32 H 0.97005 * 119.99278 * 4.91381 * 9 7 6 33 33 H 1.09006 * 109.47168 * 299.99873 * 10 9 7 34 34 H 1.09001 * 109.47355 * 59.99344 * 10 9 7 35 35 H 1.09007 * 109.50771 * 307.89225 * 13 11 10 36 36 H 1.08994 * 109.51213 * 67.99551 * 13 11 10 37 37 H 1.09000 * 109.50975 * 57.34280 * 15 14 13 38 38 H 1.08993 * 109.51533 * 177.49417 * 15 14 13 39 39 H 1.09001 * 109.68125 * 172.02999 * 16 15 14 40 40 H 1.09001 * 109.68140 * 292.53311 * 16 15 14 41 41 H 0.97002 * 120.00277 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5522 0.7092 0.0006 5 6 3.5780 -0.6888 0.0004 6 6 2.2679 -1.1182 0.0060 7 6 1.8124 -2.5125 0.0129 8 8 0.6267 -2.7658 -0.0926 9 7 2.7069 -3.5130 0.1358 10 6 2.2660 -4.9064 0.0347 11 6 3.4686 -5.8359 0.2096 12 1 4.1902 -5.6563 -0.5873 13 6 3.0034 -7.2959 0.1654 14 8 4.0966 -8.1490 0.5134 15 6 4.5920 -7.9538 1.8403 16 6 5.1384 -6.5274 1.9702 17 7 4.1004 -5.5886 1.5154 18 6 3.7330 -4.5170 2.2846 19 1 2.7153 -4.1564 2.2575 20 6 4.6685 -3.8940 3.0992 21 7 4.3018 -3.3962 4.2611 22 14 6.4479 -3.7620 2.5463 23 1 6.6519 -2.4727 1.8383 24 1 7.3404 -3.8225 3.7316 25 1 6.7660 -4.8860 1.6293 26 1 -0.3633 -0.0065 -1.0277 27 1 -0.3633 0.8932 0.5082 28 1 -0.3633 -0.8868 0.5194 29 1 1.9082 2.1236 -0.0004 30 1 4.4133 1.3611 0.0003 31 1 4.4584 -1.3145 0.0011 32 1 3.6427 -3.3105 0.2912 33 1 1.5316 -5.1126 0.8135 34 1 1.8152 -5.0748 -0.9433 35 1 2.1888 -7.4401 0.8752 36 1 2.6577 -7.5376 -0.8396 37 1 3.7831 -8.1003 2.5561 38 1 5.3898 -8.6689 2.0399 39 1 5.3875 -6.3231 3.0115 40 1 6.0291 -6.4178 1.3515 41 1 4.9556 -2.9612 4.8305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050822100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:17 Heat of formation + Delta-G solvation = 12.379054 kcal Electronic energy + Delta-G solvation = -24690.408538 eV Core-core repulsion = 21186.937552 eV Total energy + Delta-G solvation = -3503.470987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.00294 -39.10114 -38.13698 -35.43153 -33.67951 -32.61645 -31.73940 -31.00262 -29.01434 -27.47099 -26.24268 -25.44446 -23.38692 -22.50557 -21.55811 -20.19203 -19.89270 -19.03053 -17.62507 -16.67899 -15.96683 -15.85943 -15.37463 -15.23430 -14.91777 -14.79577 -14.30937 -14.00132 -13.86630 -13.52271 -13.23577 -13.06649 -12.80602 -12.54307 -12.26041 -12.07271 -12.01106 -11.87674 -11.72419 -11.56570 -10.96226 -10.76789 -10.66278 -10.26095 -9.90454 -9.58420 -9.50053 -9.25096 -8.50355 -8.44278 -8.34452 -7.84500 -6.96856 -6.14496 -3.42034 1.88938 2.96340 3.06421 3.30809 3.43939 3.47719 3.85436 3.97685 4.34376 4.46749 4.69055 4.99609 5.16976 5.17367 5.30974 5.38092 5.45708 5.58017 5.66198 5.70940 5.71431 5.84288 5.85868 5.95659 5.97368 6.03542 6.14962 6.27591 6.37674 6.46103 6.50246 6.63945 6.80239 7.00833 7.13877 7.28233 7.48927 7.64384 7.82543 8.21055 8.25860 8.80125 8.83554 9.59482 10.01414 10.99064 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.006133 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.199313 B = 4564.227536 C = 5654.556006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.414 5.414 3 C 0.002 3.998 4 C -0.208 4.208 5 C -0.138 4.138 6 C -0.037 4.037 7 C 0.584 3.416 8 O -0.573 6.573 9 N -0.680 5.680 10 C 0.140 3.860 11 C 0.123 3.877 12 H 0.045 0.955 13 C 0.056 3.944 14 O -0.389 6.389 15 C 0.042 3.958 16 C 0.108 3.892 17 N -0.599 5.599 18 C -0.284 4.284 19 H 0.090 0.910 20 C 0.051 3.949 21 N -0.872 5.872 22 Si 0.826 3.174 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.253 1.253 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.164 0.836 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.415 0.585 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.038 0.962 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 2.663 -8.606 9.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.087 5.087 3 C -0.132 4.132 4 C -0.233 4.233 5 C -0.164 4.164 6 C -0.150 4.150 7 C 0.372 3.628 8 O -0.456 6.456 9 N -0.330 5.330 10 C 0.015 3.985 11 C 0.017 3.983 12 H 0.062 0.938 13 C -0.023 4.023 14 O -0.308 6.308 15 C -0.036 4.036 16 C -0.017 4.017 17 N -0.326 5.326 18 C -0.411 4.411 19 H 0.107 0.893 20 C -0.153 4.153 21 N -0.511 5.511 22 Si 0.652 3.348 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.177 1.177 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.181 0.819 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.254 0.746 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.717 2.398 -8.638 9.705 hybrid contribution 1.546 0.716 0.292 1.728 sum -2.171 3.113 -8.346 9.169 Atomic orbital electron populations 1.22175 0.76550 1.04854 1.03431 1.43781 1.06571 1.05049 1.53344 1.21875 0.90752 0.91265 1.09353 1.20763 0.95829 0.95090 1.11582 1.21381 0.94782 0.95376 1.04833 1.20144 0.90278 0.87784 1.16825 1.16911 0.85534 0.83569 0.76829 1.90705 1.16424 1.85061 1.53422 1.45670 1.12354 1.04888 1.70124 1.21142 0.96600 0.80160 1.00565 1.21504 0.93876 0.93235 0.89734 0.93764 1.22874 0.88970 0.90334 1.00090 1.87817 1.50922 1.59954 1.32089 1.23153 0.98318 0.98384 0.83703 1.22048 0.91634 0.88308 0.99705 1.44383 1.44702 1.27560 1.15910 1.18824 0.95656 1.07384 1.19210 0.89262 1.25325 0.97117 0.97233 0.95582 1.70068 1.35340 1.38338 1.07326 0.87745 0.88093 0.79479 0.79460 1.21287 1.22129 1.17722 0.90995 0.90437 0.88007 0.81874 0.84408 0.84064 0.74622 0.91047 0.92061 0.92981 0.89505 0.93192 0.89900 0.90670 0.94447 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 10.52 59.85 0.63 1.56 16 2 N -0.41 -6.63 3.16 -120.23 -0.38 -7.01 16 3 C 0.00 0.03 11.38 -16.91 -0.19 -0.16 16 4 C -0.21 -3.18 10.81 -39.98 -0.43 -3.61 16 5 C -0.14 -2.44 10.35 -39.12 -0.40 -2.85 16 6 C -0.04 -0.69 6.88 -81.98 -0.56 -1.25 16 7 C 0.58 11.77 7.77 -12.85 -0.10 11.67 16 8 O -0.57 -12.33 14.76 5.19 0.08 -12.25 16 9 N -0.68 -13.28 3.67 -61.62 -0.23 -13.50 16 10 C 0.14 2.54 4.47 -4.05 -0.02 2.52 16 11 C 0.12 2.25 3.23 -67.42 -0.22 2.04 16 12 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 13 C 0.06 0.92 6.29 37.31 0.23 1.15 16 14 O -0.39 -6.95 10.74 -35.23 -0.38 -7.33 16 15 C 0.04 0.74 6.99 37.31 0.26 1.01 16 16 C 0.11 2.22 4.63 -3.53 -0.02 2.20 16 17 N -0.60 -12.96 2.68 -164.29 -0.44 -13.40 16 18 C -0.28 -7.10 7.11 -15.06 -0.11 -7.21 16 19 H 0.09 2.47 6.05 -52.49 -0.32 2.16 16 20 C 0.05 1.34 4.84 -17.43 -0.08 1.25 16 21 N -0.87 -25.04 13.97 55.49 0.78 -24.27 16 22 Si 0.83 19.54 26.85 -169.99 -4.56 14.98 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.25 -5.68 4.81 56.52 0.27 -5.41 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.56 6.46 -51.93 -0.34 1.23 16 29 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.14 2.47 7.50 -52.48 -0.39 2.07 16 32 H 0.41 8.38 6.09 -40.82 -0.25 8.13 16 33 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.64 6.46 -51.93 -0.34 1.30 16 40 H 0.04 0.78 6.38 -51.93 -0.33 0.45 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -31.12 326.30 -7.09 -38.20 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -5.85 Total: 11.36 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.01 Total: 8.31 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.27 Total: -58.19 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.30 Total: -19.58 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.56 Total: 14.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.12 -7.09 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050822100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.581 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds