Wall clock time and date at job start Tue Mar 31 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35530 * 125.68165 * 2 1 4 4 C 1.35447 * 108.87525 * 179.97438 * 3 2 1 5 5 C 1.39832 * 107.86318 * 0.02562 * 4 3 2 6 6 C 1.37655 * 125.67631 * 179.69450 * 2 1 3 7 7 C 1.46681 * 126.23354 * 0.02562 * 6 2 1 8 8 O 1.21700 * 119.99707 * 5.78860 * 7 6 2 9 9 N 1.34775 * 120.00258 * 185.78138 * 7 6 2 10 10 C 1.46494 * 120.00400 * 184.91995 * 9 7 6 11 11 C 1.52996 * 109.47342 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.67623 * 298.07202 * 11 10 9 13 13 C 1.53299 * 109.68370 * 177.56115 * 11 10 9 14 14 O 1.42960 * 109.22370 * 187.97159 * 13 11 10 15 15 C 1.42970 * 114.16728 * 62.57811 * 14 13 11 16 16 C 1.53297 * 109.21998 * 297.42240 * 15 14 13 17 17 N 1.47151 * 109.68635 * 58.59013 * 11 10 9 18 18 C 1.36941 * 120.98121 * 350.24035 * 17 11 10 19 19 H 1.08000 * 119.99841 * 32.21446 * 18 17 11 20 20 C 1.38809 * 120.00011 * 212.21862 * 18 17 11 21 21 N 1.31618 * 119.99743 * 214.69459 * 20 18 17 22 22 Si 1.86796 * 120.00289 * 34.69586 * 20 18 17 23 23 H 1.48503 * 109.47047 * 92.51246 * 22 20 18 24 24 H 1.48496 * 109.47580 * 212.51540 * 22 20 18 25 25 H 1.48507 * 109.47122 * 332.51835 * 22 20 18 26 26 H 1.09001 * 109.47086 * 90.36392 * 1 2 3 27 27 H 1.08994 * 109.46891 * 330.36029 * 1 2 3 28 28 H 1.09001 * 109.47111 * 210.35635 * 1 2 3 29 29 H 1.08008 * 125.55666 * 359.97438 * 3 2 1 30 30 H 1.08002 * 126.07026 * 179.97438 * 4 3 2 31 31 H 1.08009 * 126.45527 * 180.02562 * 5 4 3 32 32 H 0.97005 * 119.99278 * 4.91381 * 9 7 6 33 33 H 1.09006 * 109.47168 * 299.99873 * 10 9 7 34 34 H 1.09001 * 109.47355 * 59.99344 * 10 9 7 35 35 H 1.09007 * 109.50771 * 307.89225 * 13 11 10 36 36 H 1.08994 * 109.51213 * 67.99551 * 13 11 10 37 37 H 1.09000 * 109.50975 * 57.34280 * 15 14 13 38 38 H 1.08993 * 109.51533 * 177.49417 * 15 14 13 39 39 H 1.09001 * 109.68125 * 172.02999 * 16 15 14 40 40 H 1.09001 * 109.68140 * 292.53311 * 16 15 14 41 41 H 0.97002 * 120.00277 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2556 1.1009 0.0000 4 6 3.5522 0.7092 0.0006 5 6 3.5780 -0.6888 0.0004 6 6 2.2679 -1.1182 0.0060 7 6 1.8124 -2.5125 0.0129 8 8 0.6267 -2.7658 -0.0926 9 7 2.7069 -3.5130 0.1358 10 6 2.2660 -4.9064 0.0347 11 6 3.4686 -5.8359 0.2096 12 1 4.1902 -5.6563 -0.5873 13 6 3.0034 -7.2959 0.1654 14 8 4.0966 -8.1490 0.5134 15 6 4.5920 -7.9538 1.8403 16 6 5.1384 -6.5274 1.9702 17 7 4.1004 -5.5886 1.5154 18 6 3.7330 -4.5170 2.2846 19 1 2.7153 -4.1564 2.2575 20 6 4.6685 -3.8940 3.0992 21 7 4.3018 -3.3962 4.2611 22 14 6.4479 -3.7620 2.5463 23 1 6.6519 -2.4727 1.8383 24 1 7.3404 -3.8225 3.7316 25 1 6.7660 -4.8860 1.6293 26 1 -0.3633 -0.0065 -1.0277 27 1 -0.3633 0.8932 0.5082 28 1 -0.3633 -0.8868 0.5194 29 1 1.9082 2.1236 -0.0004 30 1 4.4133 1.3611 0.0003 31 1 4.4584 -1.3145 0.0011 32 1 3.6427 -3.3105 0.2912 33 1 1.5316 -5.1126 0.8135 34 1 1.8152 -5.0748 -0.9433 35 1 2.1888 -7.4401 0.8752 36 1 2.6577 -7.5376 -0.8396 37 1 3.7831 -8.1003 2.5561 38 1 5.3898 -8.6689 2.0399 39 1 5.3875 -6.3231 3.0115 40 1 6.0291 -6.4178 1.3515 41 1 4.9556 -2.9612 4.8305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050822100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:16 Heat of formation + Delta-G solvation = -9.102968 kcal Electronic energy + Delta-G solvation = -24691.340069 eV Core-core repulsion = 21186.937552 eV Total energy + Delta-G solvation = -3504.402517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.26226 -40.61499 -39.63647 -37.00891 -35.34236 -33.94403 -33.46446 -32.54924 -30.32901 -29.16385 -27.35663 -26.89950 -25.15137 -23.99216 -23.01347 -21.57579 -21.34803 -20.46594 -19.06177 -18.36234 -17.56157 -17.35682 -16.85482 -16.62234 -16.33901 -16.24839 -15.96468 -15.51922 -15.32426 -15.04058 -14.66305 -14.41899 -14.30643 -14.10517 -13.92857 -13.50725 -13.24493 -13.19637 -13.04996 -12.88415 -12.72050 -12.49874 -12.25933 -12.02127 -11.46567 -11.32572 -11.08671 -10.86834 -10.35762 -9.97024 -9.66802 -9.12894 -8.77602 -8.19468 -5.42672 0.53514 1.38730 1.49893 1.54522 1.73673 1.86679 2.41093 2.49010 2.54742 2.89187 3.02797 3.29679 3.87129 3.95971 3.99030 4.16973 4.20442 4.25506 4.38673 4.39991 4.46240 4.48348 4.55262 4.56706 4.60997 4.72606 4.73837 4.81660 4.97676 5.04852 5.14607 5.25715 5.28791 5.54103 5.83180 5.88422 5.99713 6.22024 6.25640 6.38443 6.65086 6.90608 7.26360 7.62795 8.07712 8.98340 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016474 B = 0.006133 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.199313 B = 4564.227536 C = 5654.556006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.420 5.420 3 C 0.026 3.974 4 C -0.225 4.225 5 C -0.150 4.150 6 C -0.080 4.080 7 C 0.578 3.422 8 O -0.596 6.596 9 N -0.683 5.683 10 C 0.143 3.857 11 C 0.124 3.876 12 H 0.057 0.943 13 C 0.059 3.941 14 O -0.391 6.391 15 C 0.050 3.950 16 C 0.104 3.896 17 N -0.611 5.611 18 C -0.252 4.252 19 H 0.055 0.945 20 C 0.001 3.999 21 N -0.926 5.926 22 Si 0.885 3.115 23 H -0.289 1.289 24 H -0.307 1.307 25 H -0.231 1.231 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.213 0.787 30 H 0.162 0.838 31 H 0.133 0.867 32 H 0.410 0.590 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.124 0.876 37 H 0.044 0.956 38 H 0.115 0.885 39 H 0.056 0.944 40 H 0.042 0.958 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.150 2.953 -10.479 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.093 5.093 3 C -0.109 4.109 4 C -0.248 4.248 5 C -0.177 4.177 6 C -0.193 4.193 7 C 0.367 3.633 8 O -0.481 6.481 9 N -0.332 5.332 10 C 0.019 3.981 11 C 0.018 3.982 12 H 0.074 0.926 13 C -0.019 4.019 14 O -0.309 6.309 15 C -0.027 4.027 16 C -0.021 4.021 17 N -0.338 5.338 18 C -0.381 4.381 19 H 0.073 0.927 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.712 3.288 23 H -0.217 1.217 24 H -0.235 1.235 25 H -0.155 1.155 26 H 0.105 0.895 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.229 0.771 30 H 0.180 0.820 31 H 0.151 0.849 32 H 0.248 0.752 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.142 0.858 37 H 0.062 0.938 38 H 0.133 0.867 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.264 2.639 -10.559 11.363 hybrid contribution 1.312 0.649 0.833 1.684 sum -1.953 3.289 -9.726 10.451 Atomic orbital electron populations 1.22322 0.75077 1.05261 1.04504 1.44088 1.07661 1.04794 1.52717 1.22672 0.90054 0.92548 1.05666 1.21133 0.97581 0.94098 1.12013 1.21544 0.94303 0.96948 1.04868 1.20066 0.91316 0.87846 1.20097 1.17239 0.85275 0.84515 0.76295 1.90671 1.17131 1.85591 1.54711 1.45683 1.12009 1.05427 1.70110 1.21163 0.96163 0.79763 1.00972 1.21681 0.93706 0.94693 0.88125 0.92558 1.22967 0.88368 0.88501 1.02088 1.87831 1.51175 1.59944 1.31935 1.23096 0.98991 0.96949 0.83707 1.22098 0.91517 0.89879 0.98629 1.44500 1.45111 1.26958 1.17230 1.18557 0.93978 1.07416 1.18114 0.92711 1.25754 1.00448 0.97973 0.95567 1.70170 1.36465 1.41344 1.08919 0.86808 0.83523 0.79816 0.78627 1.21660 1.23504 1.15504 0.89533 0.86631 0.90996 0.77078 0.82043 0.84922 0.75190 0.93672 0.89487 0.93511 0.85808 0.93784 0.86701 0.92510 0.94046 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.70 10.52 127.77 1.34 3.04 16 2 N -0.42 -12.91 3.16 -534.31 -1.69 -14.60 16 3 C 0.03 0.65 11.38 83.48 0.95 1.60 16 4 C -0.22 -6.46 10.81 22.01 0.24 -6.22 16 5 C -0.15 -5.34 10.35 22.57 0.23 -5.11 16 6 C -0.08 -3.04 6.88 40.35 0.28 -2.76 16 7 C 0.58 24.05 7.77 86.45 0.67 24.73 16 8 O -0.60 -26.50 14.76 -4.35 -0.06 -26.57 16 9 N -0.68 -27.38 3.67 -467.08 -1.72 -29.09 16 10 C 0.14 5.22 4.47 86.38 0.39 5.61 16 11 C 0.12 4.36 3.23 44.97 0.15 4.51 16 12 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 13 C 0.06 1.79 6.29 72.08 0.45 2.25 16 14 O -0.39 -12.74 10.74 -148.98 -1.60 -14.34 16 15 C 0.05 1.65 6.99 72.08 0.50 2.15 16 16 C 0.10 4.09 4.63 86.35 0.40 4.49 16 17 N -0.61 -26.21 2.68 -673.70 -1.80 -28.01 16 18 C -0.25 -12.94 7.11 84.03 0.60 -12.34 16 19 H 0.06 3.19 6.05 -2.91 -0.02 3.18 16 20 C 0.00 0.07 4.84 84.86 0.41 0.48 16 21 N -0.93 -55.34 13.97 21.65 0.30 -55.04 16 22 Si 0.89 41.29 26.85 68.60 1.84 43.13 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 25 H -0.23 -9.85 4.81 99.48 0.48 -9.37 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.24 6.46 -2.39 -0.02 2.22 16 29 H 0.21 3.09 8.06 -2.91 -0.02 3.07 16 30 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.13 4.78 7.50 -2.91 -0.02 4.76 16 32 H 0.41 17.02 6.09 -92.70 -0.56 16.46 16 33 H 0.04 1.88 7.68 -2.38 -0.02 1.86 16 34 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.06 2.45 6.46 -2.39 -0.02 2.43 16 40 H 0.04 1.62 6.38 -2.39 -0.02 1.60 16 41 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -70.00 326.30 2.13 -67.87 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.25 Total: 34.22 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 6.61 Total: 22.44 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -4.91 Total: -126.75 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.66 Total: -40.90 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.84 Total: 43.13 kcal Total: -70.00 2.13 -67.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050822100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.765 kcal (2) G-P(sol) polarization free energy of solvation -70.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds