Wall clock time and date at job start Tue Mar 31 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35534 * 125.68138 * 2 1 4 4 C 1.35448 * 108.87439 * 180.26451 * 3 2 1 5 5 C 1.39841 * 107.86559 * 359.76573 * 4 3 2 6 6 C 1.37652 * 125.67646 * 179.86385 * 2 1 3 7 7 C 1.46682 * 126.23583 * 0.02562 * 6 2 1 8 8 O 1.21694 * 119.99583 * 4.54078 * 7 6 2 9 9 N 1.34772 * 120.00104 * 184.53802 * 7 6 2 10 10 C 1.46501 * 119.99823 * 174.91644 * 9 7 6 11 11 C 1.52997 * 109.46993 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.68345 * 59.90615 * 11 10 9 13 13 C 1.53299 * 109.68165 * 180.46268 * 11 10 9 14 14 O 1.42960 * 109.22327 * 172.02340 * 13 11 10 15 15 C 1.42964 * 114.16852 * 297.42007 * 14 13 11 16 16 C 1.52875 * 109.29922 * 62.44795 * 15 14 13 17 17 N 1.47153 * 108.60868 * 307.93695 * 16 15 14 18 18 C 1.36939 * 120.98401 * 230.50036 * 17 16 15 19 19 H 1.08000 * 119.99972 * 147.95785 * 18 17 16 20 20 C 1.38807 * 119.99952 * 327.96356 * 18 17 16 21 21 N 1.31619 * 120.00240 * 349.95176 * 20 18 17 22 22 Si 1.86797 * 120.00078 * 169.94395 * 20 18 17 23 23 H 1.48500 * 109.47244 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47234 * 300.00072 * 22 20 18 25 25 H 1.48499 * 109.47091 * 60.00165 * 22 20 18 26 26 H 1.09002 * 109.47049 * 273.59250 * 1 2 3 27 27 H 1.08998 * 109.46856 * 33.58981 * 1 2 3 28 28 H 1.09001 * 109.47213 * 153.59218 * 1 2 3 29 29 H 1.08001 * 125.56237 * 0.06361 * 3 2 1 30 30 H 1.08002 * 126.06771 * 179.74410 * 4 3 2 31 31 H 1.07996 * 126.45652 * 179.97438 * 5 4 3 32 32 H 0.97006 * 120.00100 * 354.92479 * 9 7 6 33 33 H 1.09002 * 109.46746 * 60.00312 * 10 9 7 34 34 H 1.08997 * 109.46999 * 300.00479 * 10 9 7 35 35 H 1.08995 * 109.51366 * 291.94792 * 13 11 10 36 36 H 1.09007 * 109.51126 * 52.04924 * 13 11 10 37 37 H 1.08999 * 109.51294 * 182.50927 * 15 14 13 38 38 H 1.09003 * 109.51020 * 302.65608 * 15 14 13 39 39 H 1.09002 * 109.61675 * 188.11886 * 16 15 14 40 40 H 1.08997 * 109.52466 * 67.70354 * 16 15 14 41 41 H 0.96995 * 120.00440 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0059 5 6 3.5779 -0.6889 -0.0043 6 6 2.2677 -1.1182 0.0027 7 6 1.8123 -2.5125 0.0054 8 8 0.6248 -2.7648 -0.0779 9 7 2.7091 -3.5141 0.1002 10 6 2.2494 -4.9004 0.2153 11 6 3.4589 -5.8327 0.3077 12 1 4.0554 -5.5745 1.1826 13 6 2.9834 -7.2860 0.4167 14 8 4.1109 -8.1591 0.3152 15 6 4.7993 -8.0831 -0.9355 16 6 5.3643 -6.6741 -1.1165 17 7 4.2790 -5.7026 -0.9072 18 6 4.0357 -4.7103 -1.8190 19 1 3.0283 -4.3522 -1.9715 20 6 5.0839 -4.1646 -2.5472 21 7 6.3277 -4.4535 -2.2278 22 14 4.7294 -3.0205 -3.9805 23 1 6.0097 -2.5764 -4.5879 24 1 3.9207 -3.7382 -4.9985 25 1 3.9759 -1.8368 -3.4944 26 1 -0.3633 0.0644 1.0257 27 1 -0.3633 0.8561 -0.5685 28 1 -0.3634 -0.9204 -0.4571 29 1 1.9082 2.1236 0.0010 30 1 4.4132 1.3611 -0.0113 31 1 4.4583 -1.3145 -0.0083 32 1 3.6589 -3.3171 0.0924 33 1 1.6560 -5.1603 -0.6614 34 1 1.6390 -5.0075 1.1119 35 1 2.4913 -7.4370 1.3774 36 1 2.2818 -7.5010 -0.3895 37 1 5.6136 -8.8076 -0.9474 38 1 4.1051 -8.3012 -1.7470 39 1 5.7637 -6.5668 -2.1250 40 1 6.1561 -6.5027 -0.3873 41 1 7.0601 -4.0725 -2.7369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050822105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:20 Heat of formation + Delta-G solvation = 2.759730 kcal Electronic energy + Delta-G solvation = -24654.801291 eV Core-core repulsion = 21150.913179 eV Total energy + Delta-G solvation = -3503.888112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03935 -38.97040 -38.06362 -35.32327 -33.67176 -32.64168 -31.53578 -30.50493 -29.00911 -27.18602 -26.28022 -25.41251 -23.44453 -22.31766 -21.38780 -20.17591 -19.71987 -19.05825 -17.64373 -16.57767 -15.90919 -15.74679 -15.32688 -15.19125 -14.81002 -14.58768 -14.23188 -13.82084 -13.67106 -13.52188 -13.17103 -13.07175 -12.85675 -12.64897 -12.17664 -12.05670 -11.83077 -11.70762 -11.55304 -11.01082 -10.84585 -10.75032 -10.41005 -10.24114 -10.04811 -9.66327 -9.50634 -8.98951 -8.66584 -8.47618 -8.36385 -7.87294 -6.70759 -5.89312 -3.40035 1.84095 2.94395 3.02195 3.34830 3.39169 3.43589 3.85446 3.93419 4.37616 4.53570 4.96074 5.12143 5.15229 5.27607 5.30682 5.33036 5.58612 5.63349 5.70136 5.72573 5.82931 5.85492 6.01584 6.06573 6.15541 6.21945 6.34731 6.38048 6.48052 6.53099 6.75613 6.99387 7.07409 7.13028 7.25445 7.45045 7.49327 7.72339 7.86752 8.21642 8.30969 8.78924 9.07346 9.67191 10.26404 11.17106 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.006145 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.600895 B = 4555.225821 C = 5714.651328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.416 5.416 3 C 0.001 3.999 4 C -0.209 4.209 5 C -0.134 4.134 6 C -0.043 4.043 7 C 0.582 3.418 8 O -0.575 6.575 9 N -0.680 5.680 10 C 0.138 3.862 11 C 0.124 3.876 12 H 0.042 0.958 13 C 0.056 3.944 14 O -0.392 6.392 15 C 0.035 3.965 16 C 0.144 3.856 17 N -0.590 5.590 18 C -0.259 4.259 19 H 0.072 0.928 20 C 0.015 3.985 21 N -0.899 5.899 22 Si 0.894 3.106 23 H -0.289 1.289 24 H -0.285 1.285 25 H -0.276 1.276 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.164 0.836 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.418 0.582 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.029 0.971 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.333 5.145 5.119 9.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.089 5.089 3 C -0.133 4.133 4 C -0.233 4.233 5 C -0.160 4.160 6 C -0.156 4.156 7 C 0.370 3.630 8 O -0.458 6.458 9 N -0.331 5.331 10 C 0.014 3.986 11 C 0.017 3.983 12 H 0.060 0.940 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.019 3.981 17 N -0.316 5.316 18 C -0.388 4.388 19 H 0.089 0.911 20 C -0.185 4.185 21 N -0.542 5.542 22 Si 0.723 3.277 23 H -0.215 1.215 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.181 0.819 30 H 0.157 0.843 31 H 0.166 0.834 32 H 0.258 0.742 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.048 0.952 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.317 4.857 5.143 10.177 hybrid contribution 0.373 1.032 -1.171 1.605 sum -6.944 5.889 3.971 9.933 Atomic orbital electron populations 1.22256 0.76640 1.05504 1.03194 1.43788 1.06535 1.05052 1.53545 1.21892 0.90811 0.91270 1.09350 1.20803 0.95819 0.95184 1.11539 1.21514 0.95006 0.95395 1.04116 1.20175 0.90357 0.87776 1.17314 1.16944 0.85582 0.83597 0.76909 1.90680 1.16618 1.85068 1.53454 1.45689 1.10798 1.05322 1.71241 1.21180 0.96179 0.80375 1.00840 1.21437 0.92063 0.92910 0.91855 0.93998 1.22857 0.88148 0.90576 1.00701 1.87802 1.44068 1.62112 1.37111 1.23282 0.95635 1.00358 0.85029 1.21322 0.89763 0.84597 1.02463 1.44048 1.36147 1.32202 1.19211 1.19156 0.92615 1.12292 1.14708 0.91055 1.25123 0.95238 0.98166 1.00021 1.69962 0.97659 1.46241 1.40310 0.86493 0.77114 0.81359 0.82762 1.21516 1.21095 1.20149 0.91128 0.90525 0.87398 0.81900 0.84313 0.83429 0.74245 0.91317 0.92255 0.89915 0.93500 0.90215 0.94170 0.89046 0.95243 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 10.73 59.84 0.64 1.46 16 2 N -0.42 -6.46 3.16 -120.24 -0.38 -6.84 16 3 C 0.00 0.02 11.38 -16.91 -0.19 -0.17 16 4 C -0.21 -3.12 10.81 -39.98 -0.43 -3.55 16 5 C -0.13 -2.35 10.36 -39.11 -0.41 -2.75 16 6 C -0.04 -0.79 6.89 -81.98 -0.56 -1.35 16 7 C 0.58 11.53 7.77 -12.85 -0.10 11.43 16 8 O -0.58 -12.13 14.59 5.19 0.08 -12.06 16 9 N -0.68 -13.26 3.77 -61.62 -0.23 -13.49 16 10 C 0.14 2.57 4.45 -4.04 -0.02 2.55 16 11 C 0.12 2.42 3.21 -67.42 -0.22 2.21 16 12 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 13 C 0.06 0.99 6.29 37.31 0.23 1.22 16 14 O -0.39 -7.59 10.74 -35.23 -0.38 -7.97 16 15 C 0.03 0.67 6.97 37.09 0.26 0.93 16 16 C 0.14 3.25 5.34 -3.75 -0.02 3.23 16 17 N -0.59 -13.52 3.03 -164.55 -0.50 -14.01 16 18 C -0.26 -6.41 7.03 -15.06 -0.11 -6.52 16 19 H 0.07 1.83 5.84 -52.49 -0.31 1.52 16 20 C 0.01 0.37 5.07 -17.43 -0.09 0.29 16 21 N -0.90 -24.07 11.16 55.49 0.62 -23.45 16 22 Si 0.89 21.16 29.57 -169.99 -5.03 16.13 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.11 1.59 6.04 -51.93 -0.31 1.28 16 29 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.15 2.61 7.45 -52.49 -0.39 2.22 16 32 H 0.42 8.55 6.22 -40.82 -0.25 8.30 16 33 H 0.07 1.38 7.56 -51.93 -0.39 0.99 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 2.27 6.37 -51.93 -0.33 1.94 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 LS Contribution 330.82 15.07 4.99 4.99 Total: -1.00 -29.79 330.82 -7.62 -37.41 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.77 Total: 10.34 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.01 Total: 8.96 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.49 Total: -57.80 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.30 Total: -20.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.79 -7.62 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050822105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.167 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds