Wall clock time and date at job start Tue Mar 31 2020 03:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35534 * 125.68138 * 2 1 4 4 C 1.35448 * 108.87439 * 180.26451 * 3 2 1 5 5 C 1.39841 * 107.86559 * 359.76573 * 4 3 2 6 6 C 1.37652 * 125.67646 * 179.86385 * 2 1 3 7 7 C 1.46682 * 126.23583 * 0.02562 * 6 2 1 8 8 O 1.21694 * 119.99583 * 4.54078 * 7 6 2 9 9 N 1.34772 * 120.00104 * 184.53802 * 7 6 2 10 10 C 1.46501 * 119.99823 * 174.91644 * 9 7 6 11 11 C 1.52997 * 109.46993 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.68345 * 59.90615 * 11 10 9 13 13 C 1.53299 * 109.68165 * 180.46268 * 11 10 9 14 14 O 1.42960 * 109.22327 * 172.02340 * 13 11 10 15 15 C 1.42964 * 114.16852 * 297.42007 * 14 13 11 16 16 C 1.52875 * 109.29922 * 62.44795 * 15 14 13 17 17 N 1.47153 * 108.60868 * 307.93695 * 16 15 14 18 18 C 1.36939 * 120.98401 * 230.50036 * 17 16 15 19 19 H 1.08000 * 119.99972 * 147.95785 * 18 17 16 20 20 C 1.38807 * 119.99952 * 327.96356 * 18 17 16 21 21 N 1.31619 * 120.00240 * 349.95176 * 20 18 17 22 22 Si 1.86797 * 120.00078 * 169.94395 * 20 18 17 23 23 H 1.48500 * 109.47244 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.47234 * 300.00072 * 22 20 18 25 25 H 1.48499 * 109.47091 * 60.00165 * 22 20 18 26 26 H 1.09002 * 109.47049 * 273.59250 * 1 2 3 27 27 H 1.08998 * 109.46856 * 33.58981 * 1 2 3 28 28 H 1.09001 * 109.47213 * 153.59218 * 1 2 3 29 29 H 1.08001 * 125.56237 * 0.06361 * 3 2 1 30 30 H 1.08002 * 126.06771 * 179.74410 * 4 3 2 31 31 H 1.07996 * 126.45652 * 179.97438 * 5 4 3 32 32 H 0.97006 * 120.00100 * 354.92479 * 9 7 6 33 33 H 1.09002 * 109.46746 * 60.00312 * 10 9 7 34 34 H 1.08997 * 109.46999 * 300.00479 * 10 9 7 35 35 H 1.08995 * 109.51366 * 291.94792 * 13 11 10 36 36 H 1.09007 * 109.51126 * 52.04924 * 13 11 10 37 37 H 1.08999 * 109.51294 * 182.50927 * 15 14 13 38 38 H 1.09003 * 109.51020 * 302.65608 * 15 14 13 39 39 H 1.09002 * 109.61675 * 188.11886 * 16 15 14 40 40 H 1.08997 * 109.52466 * 67.70354 * 16 15 14 41 41 H 0.96995 * 120.00440 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0059 5 6 3.5779 -0.6889 -0.0043 6 6 2.2677 -1.1182 0.0027 7 6 1.8123 -2.5125 0.0054 8 8 0.6248 -2.7648 -0.0779 9 7 2.7091 -3.5141 0.1002 10 6 2.2494 -4.9004 0.2153 11 6 3.4589 -5.8327 0.3077 12 1 4.0554 -5.5745 1.1826 13 6 2.9834 -7.2860 0.4167 14 8 4.1109 -8.1591 0.3152 15 6 4.7993 -8.0831 -0.9355 16 6 5.3643 -6.6741 -1.1165 17 7 4.2790 -5.7026 -0.9072 18 6 4.0357 -4.7103 -1.8190 19 1 3.0283 -4.3522 -1.9715 20 6 5.0839 -4.1646 -2.5472 21 7 6.3277 -4.4535 -2.2278 22 14 4.7294 -3.0205 -3.9805 23 1 6.0097 -2.5764 -4.5879 24 1 3.9207 -3.7382 -4.9985 25 1 3.9759 -1.8368 -3.4944 26 1 -0.3633 0.0644 1.0257 27 1 -0.3633 0.8561 -0.5685 28 1 -0.3634 -0.9204 -0.4571 29 1 1.9082 2.1236 0.0010 30 1 4.4132 1.3611 -0.0113 31 1 4.4583 -1.3145 -0.0083 32 1 3.6589 -3.3171 0.0924 33 1 1.6560 -5.1603 -0.6614 34 1 1.6390 -5.0075 1.1119 35 1 2.4913 -7.4370 1.3774 36 1 2.2818 -7.5010 -0.3895 37 1 5.6136 -8.8076 -0.9474 38 1 4.1051 -8.3012 -1.7470 39 1 5.7637 -6.5668 -2.1250 40 1 6.1561 -6.5027 -0.3873 41 1 7.0601 -4.0725 -2.7369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050822105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:19 Heat of formation + Delta-G solvation = -16.457728 kcal Electronic energy + Delta-G solvation = -24655.634622 eV Core-core repulsion = 21150.913179 eV Total energy + Delta-G solvation = -3504.721443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.26698 -40.52503 -39.60190 -36.94627 -35.37334 -33.90354 -33.16066 -32.21253 -30.31406 -28.96446 -27.34452 -26.91801 -25.23805 -23.82007 -22.89568 -21.43593 -21.33103 -20.47111 -19.04274 -18.25696 -17.58719 -17.30285 -16.71060 -16.49174 -16.27837 -16.19637 -15.94097 -15.38613 -15.19528 -15.00903 -14.72708 -14.41329 -14.26663 -14.11781 -13.56254 -13.23956 -13.18425 -13.07803 -12.87849 -12.85394 -12.73340 -12.51260 -12.15953 -11.99791 -11.85966 -11.30331 -11.03106 -10.64626 -10.56126 -9.95957 -9.66359 -9.13032 -8.59810 -7.87238 -5.38377 0.51918 1.41556 1.44883 1.49246 1.76305 1.84450 2.40644 2.45150 2.56140 3.04337 3.29534 3.44714 3.87646 3.99855 4.03023 4.19798 4.22877 4.33600 4.40727 4.48686 4.50000 4.56578 4.59976 4.64722 4.66658 4.74121 4.76659 5.01005 5.11706 5.17215 5.29176 5.31011 5.53101 5.64115 5.69225 5.83554 5.99666 6.30461 6.38060 6.38516 6.65834 7.11929 7.25164 7.76741 8.32945 9.16933 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.006145 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.600895 B = 4555.225821 C = 5714.651328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.419 5.419 3 C 0.028 3.972 4 C -0.226 4.226 5 C -0.148 4.148 6 C -0.083 4.083 7 C 0.578 3.422 8 O -0.595 6.595 9 N -0.685 5.685 10 C 0.144 3.856 11 C 0.125 3.875 12 H 0.038 0.962 13 C 0.059 3.941 14 O -0.397 6.397 15 C 0.046 3.954 16 C 0.149 3.851 17 N -0.604 5.604 18 C -0.243 4.243 19 H 0.064 0.936 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 0.940 3.060 23 H -0.292 1.292 24 H -0.288 1.288 25 H -0.281 1.281 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.080 0.920 29 H 0.213 0.787 30 H 0.161 0.839 31 H 0.132 0.868 32 H 0.412 0.588 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.007 0.993 41 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 6.252 5.791 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.092 5.092 3 C -0.108 4.108 4 C -0.249 4.249 5 C -0.175 4.175 6 C -0.196 4.196 7 C 0.368 3.632 8 O -0.479 6.479 9 N -0.334 5.334 10 C 0.021 3.979 11 C 0.019 3.981 12 H 0.055 0.945 13 C -0.020 4.020 14 O -0.315 6.315 15 C -0.031 4.031 16 C 0.023 3.977 17 N -0.330 5.330 18 C -0.373 4.373 19 H 0.081 0.919 20 C -0.222 4.222 21 N -0.568 5.568 22 Si 0.770 3.230 23 H -0.217 1.217 24 H -0.215 1.215 25 H -0.208 1.208 26 H 0.105 0.895 27 H 0.132 0.868 28 H 0.099 0.901 29 H 0.229 0.771 30 H 0.179 0.821 31 H 0.150 0.850 32 H 0.250 0.750 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.710 5.942 5.826 12.046 hybrid contribution 0.751 0.755 -1.325 1.699 sum -7.959 6.697 4.502 11.334 Atomic orbital electron populations 1.22416 0.74977 1.05750 1.04637 1.44094 1.07692 1.04686 1.52772 1.22673 0.90007 0.92582 1.05551 1.21150 0.97630 0.94093 1.12061 1.21597 0.94456 0.96951 1.04467 1.20043 0.91245 0.87844 1.20463 1.17226 0.85283 0.84423 0.76309 1.90656 1.17184 1.85561 1.54547 1.45721 1.10423 1.05794 1.71471 1.21161 0.95726 0.79902 1.01161 1.21575 0.91726 0.94783 0.90045 0.94465 1.22976 0.87672 0.88488 1.02855 1.87807 1.44531 1.62256 1.36939 1.23142 0.96354 0.98338 0.85293 1.21158 0.89461 0.86836 1.00207 1.44239 1.36463 1.32027 1.20257 1.19146 0.91959 1.11782 1.14379 0.91889 1.25539 0.95278 0.99588 1.01806 1.70068 0.97985 1.47524 1.41190 0.85768 0.76425 0.79931 0.80899 1.21744 1.21491 1.20752 0.89532 0.86809 0.90116 0.77051 0.82117 0.84992 0.75027 0.92938 0.89849 0.86303 0.93189 0.87675 0.93870 0.91661 0.97477 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.41 10.73 127.77 1.37 2.78 16 2 N -0.42 -12.20 3.16 -534.32 -1.69 -13.89 16 3 C 0.03 0.65 11.38 83.48 0.95 1.60 16 4 C -0.23 -6.31 10.81 22.01 0.24 -6.07 16 5 C -0.15 -5.20 10.36 22.57 0.23 -4.97 16 6 C -0.08 -3.03 6.89 40.35 0.28 -2.75 16 7 C 0.58 23.24 7.77 86.45 0.67 23.92 16 8 O -0.59 -25.32 14.59 -4.33 -0.06 -25.38 16 9 N -0.68 -27.23 3.77 -467.08 -1.76 -28.99 16 10 C 0.14 5.33 4.45 86.38 0.38 5.71 16 11 C 0.12 4.80 3.21 44.96 0.14 4.95 16 12 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 13 C 0.06 1.93 6.29 72.08 0.45 2.39 16 14 O -0.40 -14.54 10.74 -148.98 -1.60 -16.15 16 15 C 0.05 1.73 6.97 71.94 0.50 2.23 16 16 C 0.15 6.81 5.34 86.21 0.46 7.27 16 17 N -0.60 -27.94 3.03 -674.52 -2.05 -29.99 16 18 C -0.24 -12.26 7.03 84.03 0.59 -11.67 16 19 H 0.06 3.29 5.84 -2.91 -0.02 3.28 16 20 C -0.02 -1.31 5.07 84.86 0.43 -0.88 16 21 N -0.92 -50.83 11.16 21.65 0.24 -50.59 16 22 Si 0.94 44.48 29.57 68.60 2.03 46.51 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 2.32 6.04 -2.39 -0.01 2.30 16 29 H 0.21 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 31 H 0.13 4.91 7.45 -2.91 -0.02 4.89 16 32 H 0.41 17.46 6.22 -92.70 -0.58 16.88 16 33 H 0.05 2.11 7.56 -2.39 -0.02 2.09 16 34 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 3.33 6.37 -2.39 -0.02 3.31 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -65.61 330.82 2.28 -63.32 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.47 Total: 30.64 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 6.71 Total: 24.51 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -5.25 Total: -123.45 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.66 Total: -41.52 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -65.61 2.28 -63.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050822105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.866 kcal (2) G-P(sol) polarization free energy of solvation -65.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds