Wall clock time and date at job start Tue Mar 31 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36446 * 124.85190 * 2 1 4 4 C 1.34484 * 108.85534 * 180.02562 * 3 2 1 5 5 C 1.46693 * 106.33418 * 359.97438 * 4 3 2 6 6 C 1.47264 * 126.94430 * 180.02562 * 5 4 3 7 7 O 1.21618 * 120.00035 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99573 * 0.02562 * 6 5 4 9 9 C 1.46505 * 119.99565 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.46647 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.71702 * 299.95358 * 10 9 8 12 12 C 1.52880 * 109.61666 * 179.64801 * 10 9 8 13 13 O 1.42960 * 109.29975 * 188.11430 * 12 10 9 14 14 C 1.42959 * 114.16455 * 62.45607 * 13 12 10 15 15 C 1.53298 * 109.22196 * 297.41520 * 14 13 12 16 16 N 1.47151 * 108.38304 * 52.30536 * 15 14 13 17 17 C 1.36929 * 120.98345 * 129.44434 * 16 15 14 18 18 H 1.08001 * 120.00301 * 211.15300 * 17 16 15 19 19 C 1.38814 * 120.00169 * 31.15606 * 17 16 15 20 20 N 1.31620 * 119.99838 * 10.96925 * 19 17 16 21 21 Si 1.86796 * 120.00052 * 190.97674 * 19 17 16 22 22 H 1.48505 * 109.47046 * 179.97438 * 21 19 17 23 23 H 1.48509 * 109.47127 * 299.99461 * 21 19 17 24 24 H 1.48499 * 109.47536 * 59.99556 * 21 19 17 25 25 C 1.34662 * 124.84547 * 180.33112 * 2 1 3 26 26 H 1.09003 * 109.46460 * 89.97389 * 1 2 3 27 27 H 1.09002 * 109.47264 * 209.97327 * 1 2 3 28 28 H 1.08994 * 109.46822 * 329.98034 * 1 2 3 29 29 H 1.07997 * 125.56888 * 0.03926 * 3 2 1 30 30 H 1.08003 * 126.83221 * 179.97438 * 4 3 2 31 31 H 0.96995 * 119.99942 * 0.02562 * 8 6 5 32 32 H 1.08994 * 109.46593 * 60.00016 * 9 8 6 33 33 H 1.08998 * 109.46712 * 299.99956 * 9 8 6 34 34 H 1.08999 * 109.58083 * 68.10228 * 12 10 9 35 35 H 1.08999 * 109.36868 * 308.00226 * 12 10 9 36 36 H 1.09002 * 109.51430 * 177.49447 * 14 13 12 37 37 H 1.08994 * 109.56239 * 57.36347 * 14 13 12 38 38 H 1.08999 * 109.68076 * 292.58440 * 15 14 13 39 39 H 1.08996 * 109.71413 * 172.04818 * 15 14 13 40 40 H 0.97003 * 119.99988 * 180.02562 * 20 19 17 41 41 H 1.08001 * 125.80663 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2448 1.1197 0.0000 4 6 3.5376 0.7491 -0.0006 5 6 3.5462 -0.7178 -0.0003 6 6 4.7284 -1.5960 -0.0002 7 8 4.5885 -2.8041 -0.0005 8 7 5.9654 -1.0607 0.0002 9 6 7.1414 -1.9344 0.0008 10 6 8.4109 -1.0805 0.0018 11 1 8.4307 -0.4500 -0.8871 12 6 9.6405 -1.9889 0.0113 13 8 10.8135 -1.1943 0.2026 14 6 10.8513 -0.4976 1.4504 15 6 9.6818 0.4917 1.5116 16 7 8.4405 -0.2377 1.2078 17 6 7.3470 -0.1397 2.0262 18 1 6.6709 -0.9759 2.1265 19 6 7.1075 1.0344 2.7269 20 7 7.7968 2.1201 2.4470 21 14 5.8072 1.0733 4.0674 22 1 5.7468 2.4341 4.6591 23 1 4.4855 0.7272 3.4852 24 1 6.1555 0.0897 5.1239 25 6 2.2345 -1.1051 -0.0064 26 1 -0.3632 0.0005 -1.0277 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5141 29 1 1.8829 2.1372 0.0006 30 1 4.3982 1.4017 -0.0011 31 1 6.0769 -0.0972 0.0007 32 1 7.1270 -2.5636 -0.8890 33 1 7.1263 -2.5633 0.8910 34 1 9.7106 -2.5187 -0.9386 35 1 9.5517 -2.7089 0.8248 36 1 11.7924 0.0456 1.5357 37 1 10.7674 -1.2114 2.2697 38 1 9.8317 1.2831 0.7772 39 1 9.6183 0.9246 2.5099 40 1 7.6297 2.9405 2.9369 41 1 1.8767 -2.1241 -0.0127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050863156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:23 Heat of formation + Delta-G solvation = 3.572206 kcal Electronic energy + Delta-G solvation = -24395.442035 eV Core-core repulsion = 20891.589155 eV Total energy + Delta-G solvation = -3503.852880 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.92449 -38.90752 -37.98932 -35.17859 -33.43397 -32.67450 -31.34430 -30.35352 -28.90081 -27.26672 -26.73481 -25.08569 -23.38006 -22.22018 -21.31430 -19.85826 -19.62569 -19.00183 -17.67294 -16.56505 -15.79594 -15.60683 -15.27943 -15.22837 -14.72645 -14.54042 -14.17629 -13.92381 -13.69536 -13.56768 -13.16328 -12.89869 -12.77008 -12.49376 -12.37324 -12.23555 -11.78967 -11.64764 -11.46268 -10.96136 -10.79865 -10.66184 -10.34667 -10.19583 -9.96916 -9.60923 -9.31734 -8.90252 -8.58147 -8.39202 -8.17740 -7.91973 -6.65705 -5.83458 -3.32325 2.16152 2.74425 2.96859 3.38240 3.41172 3.46852 4.09394 4.23605 4.43563 4.59546 4.67987 4.99442 5.07334 5.21122 5.22691 5.22725 5.35001 5.67309 5.71003 5.79787 5.82262 5.95003 6.08681 6.17165 6.20574 6.21878 6.31194 6.38668 6.47901 6.59700 6.84919 7.03681 7.13042 7.24526 7.34282 7.42087 7.53964 7.79562 7.91997 8.35816 8.49655 9.09285 9.13936 9.73715 10.32435 11.23313 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.005667 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.617250 B = 4940.001884 C = 6086.065705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.453 5.453 3 C -0.029 4.029 4 C -0.154 4.154 5 C -0.220 4.220 6 C 0.584 3.416 7 O -0.579 6.579 8 N -0.690 5.690 9 C 0.137 3.863 10 C 0.125 3.875 11 H 0.041 0.959 12 C 0.056 3.944 13 O -0.393 6.393 14 C 0.034 3.966 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.074 0.926 19 C 0.012 3.988 20 N -0.902 5.902 21 Si 0.894 3.106 22 H -0.292 1.292 23 H -0.275 1.275 24 H -0.285 1.285 25 C 0.061 3.939 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.415 0.585 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.029 0.971 39 H 0.092 0.908 40 H 0.254 0.746 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 -1.916 -5.144 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.130 5.130 3 C -0.154 4.154 4 C -0.178 4.178 5 C -0.230 4.230 6 C 0.372 3.628 7 O -0.462 6.462 8 N -0.340 5.340 9 C 0.013 3.987 10 C 0.018 3.982 11 H 0.058 0.942 12 C -0.023 4.023 13 O -0.311 6.311 14 C -0.043 4.043 15 C 0.019 3.981 16 N -0.316 5.316 17 C -0.381 4.381 18 H 0.092 0.908 19 C -0.188 4.188 20 N -0.546 5.546 21 Si 0.723 3.277 22 H -0.217 1.217 23 H -0.201 1.201 24 H -0.212 1.212 25 C -0.074 4.074 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.181 0.819 30 H 0.167 0.833 31 H 0.254 0.746 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.222 -2.511 -5.196 10.878 hybrid contribution -0.857 0.725 1.121 1.587 sum -10.078 -1.786 -4.074 11.017 Atomic orbital electron populations 1.22031 0.77500 1.04325 1.03077 1.43536 1.06365 1.06013 1.57059 1.21676 0.90666 0.91001 1.12095 1.22217 0.96273 0.93596 1.05690 1.20463 0.92642 0.93502 1.16431 1.17333 0.82724 0.86736 0.75979 1.90682 1.87041 1.14869 1.53607 1.45794 1.04155 1.11623 1.72446 1.21127 0.84261 0.92569 1.00782 1.21344 0.92330 0.92736 0.91814 0.94178 1.22794 0.86277 0.92784 1.00458 1.87796 1.40526 1.63967 1.38859 1.23350 1.00358 0.95576 0.85058 1.21406 0.83027 0.91468 1.02220 1.44077 1.10893 1.53636 1.23038 1.19211 1.02713 0.96657 1.19545 0.90838 1.25085 0.98326 0.94951 1.00404 1.69980 1.42757 1.00134 1.41742 0.86479 0.82409 0.76491 0.82274 1.21749 1.20118 1.21185 1.21678 0.89943 0.91419 1.04315 0.91025 0.89912 0.89895 0.81939 0.83254 0.74643 0.92457 0.91668 0.89895 0.93545 0.90307 0.94150 0.95306 0.89000 0.93544 0.81200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 11.03 59.85 0.66 1.21 16 2 N -0.45 -5.82 3.09 -124.52 -0.38 -6.21 16 3 C -0.03 -0.40 11.34 -16.83 -0.19 -0.59 16 4 C -0.15 -2.62 10.56 -37.50 -0.40 -3.02 16 5 C -0.22 -4.07 6.29 -103.35 -0.65 -4.72 16 6 C 0.58 12.19 7.81 -12.59 -0.10 12.09 16 7 O -0.58 -13.27 16.91 5.26 0.09 -13.18 16 8 N -0.69 -14.14 3.76 -61.44 -0.23 -14.37 16 9 C 0.14 2.70 4.44 -4.04 -0.02 2.68 16 10 C 0.12 2.53 3.19 -67.64 -0.22 2.31 16 11 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 12 C 0.06 1.02 6.27 37.10 0.23 1.25 16 13 O -0.39 -7.81 10.74 -35.23 -0.38 -8.19 16 14 C 0.03 0.68 6.98 37.31 0.26 0.94 16 15 C 0.14 3.33 5.38 -3.53 -0.02 3.31 16 16 N -0.59 -13.91 3.04 -164.55 -0.50 -14.41 16 17 C -0.25 -6.39 7.06 -15.06 -0.11 -6.50 16 18 H 0.07 1.93 5.79 -52.49 -0.30 1.63 16 19 C 0.01 0.30 5.05 -17.43 -0.09 0.22 16 20 N -0.90 -24.49 11.15 55.49 0.62 -23.87 16 21 Si 0.89 21.36 29.57 -169.99 -5.03 16.34 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.06 0.94 11.12 -16.84 -0.19 0.75 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.53 8.13 -51.93 -0.42 0.10 16 28 H 0.08 0.51 8.13 -51.93 -0.42 0.08 16 29 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.15 2.60 7.70 -52.48 -0.40 2.20 16 31 H 0.42 8.85 6.43 -40.82 -0.26 8.59 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.38 7.57 -51.93 -0.39 0.99 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 2.33 6.33 -51.93 -0.33 2.00 16 40 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 41 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -31.65 335.73 -7.47 -39.11 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.90 Total: 9.79 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.82 Total: 9.93 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.50 Total: -58.86 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.29 Total: -21.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.65 -7.47 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050863156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.685 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds