Wall clock time and date at job start Tue Mar 31 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47353 * 240.00046 * 3 2 1 5 5 H 1.48509 * 109.46891 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47022 * 119.99852 * 3 2 1 7 7 C 1.38811 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00128 * 195.79635 * 7 2 1 9 9 N 1.36940 * 120.00193 * 15.79414 * 7 2 1 10 10 C 1.47605 * 118.63881 * 26.26752 * 9 7 2 11 11 C 1.53951 * 112.13843 * 138.15192 * 10 9 7 12 12 C 1.50886 * 110.09516 * 319.43347 * 11 10 9 13 13 C 1.52563 * 109.35965 * 91.88437 * 12 11 10 14 14 H 1.09003 * 108.39187 * 36.15698 * 13 12 11 15 15 N 1.46502 * 108.51406 * 153.73659 * 13 12 11 16 16 C 1.34773 * 120.00149 * 209.77378 * 15 13 12 17 17 O 1.21284 * 120.00420 * 359.97438 * 16 15 13 18 18 C 1.50704 * 119.99956 * 179.97438 * 16 15 13 19 19 N 1.46502 * 109.47017 * 179.97438 * 18 16 15 20 20 N 1.28601 * 124.61437 * 269.69896 * 19 18 16 21 21 C 1.31388 * 108.71497 * 179.83208 * 20 19 18 22 22 C 1.39673 * 105.89692 * 0.41368 * 21 20 19 23 23 N 1.28595 * 124.61774 * 90.00239 * 19 18 16 24 24 C 1.47091 * 114.33187 * 274.99060 * 13 12 11 25 25 C 1.44577 * 118.64357 * 206.53827 * 9 7 2 26 26 H 0.97000 * 120.00244 * 0.02562 * 1 2 3 27 27 H 1.09000 * 108.94702 * 258.82776 * 10 9 7 28 28 H 1.08997 * 108.95177 * 17.46517 * 10 9 7 29 29 H 1.08996 * 109.36916 * 199.24417 * 11 10 9 30 30 H 1.08998 * 109.36743 * 79.62072 * 11 10 9 31 31 H 1.09005 * 109.48830 * 331.92403 * 12 11 10 32 32 H 1.08994 * 109.51034 * 211.86531 * 12 11 10 33 33 H 0.97001 * 119.99621 * 29.76429 * 15 13 12 34 34 H 1.08996 * 109.47192 * 299.99574 * 18 16 15 35 35 H 1.09004 * 109.47088 * 59.99562 * 18 16 15 36 36 H 1.07998 * 127.04774 * 180.15902 * 21 20 19 37 37 H 1.08009 * 127.05025 * 179.72864 * 22 21 20 38 38 H 1.09000 * 109.32478 * 302.54448 * 24 13 12 39 39 H 1.08995 * 109.33444 * 183.06253 * 24 13 12 40 40 H 1.09004 * 109.45083 * 30.48857 * 25 9 7 41 41 H 1.09001 * 109.44689 * 150.43443 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0597 -1.2199 0.2541 9 7 1.3644 -2.3656 -0.3238 10 6 0.1788 -2.2965 -1.2003 11 6 0.1668 -3.4228 -2.2498 12 6 1.5567 -3.6368 -2.7966 13 6 2.2643 -4.7091 -1.9740 14 1 1.5303 -5.4617 -1.6857 15 7 3.2776 -5.3488 -2.8167 16 6 3.6136 -6.6370 -2.6065 17 8 3.0774 -7.2665 -1.7193 18 6 4.6555 -7.2951 -3.4738 19 7 4.8398 -8.6844 -3.0467 20 7 5.6911 -9.0702 -2.1634 21 6 5.5893 -10.3723 -2.0204 22 6 4.5922 -10.7782 -2.9103 23 7 4.1762 -9.6846 -3.5080 24 6 2.9193 -4.2055 -0.7570 25 6 1.8685 -3.6101 0.2122 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7193 -2.3742 -0.5876 28 1 0.1733 -1.3348 -1.7133 29 1 -0.5042 -3.1507 -3.0645 30 1 -0.1852 -4.3446 -1.7867 31 1 2.1180 -2.7042 -2.7382 32 1 1.4934 -3.9586 -3.8361 33 1 3.7066 -4.8452 -3.5262 34 1 4.3286 -7.2746 -4.5134 35 1 5.5993 -6.7580 -3.3791 36 1 6.1623 -11.0005 -1.3545 37 1 4.2363 -11.7847 -3.0738 38 1 3.6388 -3.4328 -1.0280 39 1 3.4422 -5.0245 -0.2633 40 1 2.3317 -3.4265 1.1817 41 1 1.0448 -4.3141 0.3310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052418219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:08 Heat of formation + Delta-G solvation = 78.448469 kcal Electronic energy + Delta-G solvation = -23764.212914 eV Core-core repulsion = 20295.899663 eV Total energy + Delta-G solvation = -3468.313251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.45800 -41.22850 -39.27131 -36.47881 -34.79408 -34.10585 -33.36487 -33.34795 -31.88635 -29.28751 -27.78711 -25.75737 -25.07350 -23.79289 -23.14272 -21.68997 -21.54146 -20.95699 -18.83127 -18.68299 -18.43039 -17.18319 -17.02444 -16.72955 -16.60225 -15.83070 -15.66524 -15.52751 -15.30722 -15.09876 -14.84761 -14.40529 -14.19031 -13.65286 -13.39382 -13.18047 -13.03918 -12.67562 -12.55400 -12.44997 -12.17869 -12.07748 -11.78112 -11.77617 -11.58201 -11.53933 -11.37307 -11.30760 -11.26899 -10.45380 -10.22899 -10.18158 -8.66816 -7.84389 -5.31291 0.76241 1.28347 1.42377 1.48784 1.49601 1.56799 1.63858 2.16500 2.52975 3.29142 3.33418 3.52739 3.64343 3.76355 4.00437 4.03567 4.09509 4.19667 4.29924 4.41177 4.42581 4.59809 4.64313 4.73857 4.92858 4.97091 5.08623 5.09879 5.12265 5.21970 5.29107 5.36571 5.46223 5.48078 5.58029 5.68247 5.68921 5.81649 6.41128 6.45259 7.11709 7.19442 7.38734 7.94283 8.34326 9.20702 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034222 B = 0.003194 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.998907 B = 8765.573940 C = 9015.432721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.047 4.047 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.601 5.601 10 C 0.187 3.813 11 C -0.130 4.130 12 C -0.100 4.100 13 C 0.170 3.830 14 H 0.055 0.945 15 N -0.704 5.704 16 C 0.498 3.502 17 O -0.578 6.578 18 C 0.121 3.879 19 N -0.157 5.157 20 N -0.314 5.314 21 C -0.027 4.027 22 C -0.026 4.026 23 N -0.312 5.312 24 C -0.134 4.134 25 C 0.159 3.841 26 H 0.249 0.751 27 H -0.011 1.011 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.420 0.580 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.230 0.770 37 H 0.231 0.769 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.670 -16.507 -11.807 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.206 1.206 7 C -0.395 4.395 8 H 0.083 0.917 9 N -0.323 5.323 10 C 0.062 3.938 11 C -0.170 4.170 12 C -0.138 4.138 13 C 0.066 3.934 14 H 0.074 0.926 15 N -0.357 5.357 16 C 0.283 3.717 17 O -0.458 6.458 18 C -0.002 4.002 19 N -0.057 5.057 20 N -0.155 5.155 21 C -0.210 4.210 22 C -0.209 4.209 23 N -0.152 5.152 24 C -0.175 4.175 25 C 0.031 3.969 26 H 0.058 0.942 27 H 0.007 0.993 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.258 0.742 34 H 0.188 0.812 35 H 0.184 0.816 36 H 0.247 0.753 37 H 0.248 0.752 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.984 -15.487 -11.600 21.773 hybrid contribution 0.223 0.417 0.647 0.801 sum 10.206 -15.070 -10.953 21.243 Atomic orbital electron populations 1.70233 1.06606 1.25783 1.55608 1.25757 0.95967 1.01350 1.01161 0.85387 0.77552 0.79423 0.78334 1.19980 1.22282 1.20586 1.19456 0.92604 0.86017 1.41445 0.91701 1.43861 1.32416 1.02069 1.53974 1.20813 0.86860 0.96251 0.89862 1.21836 0.97273 0.98875 0.98987 1.21131 0.95757 0.98176 0.98743 1.19726 0.89284 0.94105 0.90242 0.92634 1.46083 1.41912 1.10994 1.36681 1.21059 0.83481 0.82596 0.84573 1.90769 1.55382 1.64753 1.34851 1.22021 1.02279 0.74800 1.01069 1.47581 1.23522 1.08003 1.26616 1.74021 1.15020 1.16578 1.09842 1.25451 1.01969 0.90341 1.03243 1.25453 0.98518 0.99417 0.97540 1.73996 1.20205 0.96360 1.24679 1.21586 0.99535 0.99320 0.97094 1.20639 0.94522 0.87407 0.94329 0.94193 0.99314 0.93390 0.90265 0.93230 0.91636 0.89249 0.74243 0.81165 0.81578 0.75347 0.75229 0.92055 0.93324 0.94527 0.95055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.69 11.00 21.65 0.24 -54.45 16 2 C -0.05 -2.57 4.87 84.86 0.41 -2.16 16 3 Si 0.96 44.01 29.58 68.60 2.03 46.04 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.26 -14.20 9.44 84.03 0.79 -13.41 16 8 H 0.07 3.41 7.88 -2.91 -0.02 3.39 16 9 N -0.60 -29.45 2.27 -698.36 -1.59 -31.04 16 10 C 0.19 8.83 4.66 86.49 0.40 9.23 16 11 C -0.13 -4.58 5.71 30.23 0.17 -4.41 16 12 C -0.10 -2.98 5.00 29.76 0.15 -2.83 16 13 C 0.17 5.22 1.96 43.01 0.08 5.30 16 14 H 0.06 1.98 6.65 -2.39 -0.02 1.96 16 15 N -0.70 -15.65 4.88 -452.05 -2.21 -17.86 16 16 C 0.50 12.62 7.74 87.66 0.68 13.30 16 17 O -0.58 -21.35 15.93 -3.04 -0.05 -21.40 16 18 C 0.12 2.03 7.02 85.63 0.60 2.63 16 19 N -0.16 -3.79 3.44 -190.80 -0.66 -4.44 16 20 N -0.31 -7.88 12.05 -56.86 -0.69 -8.56 16 21 C -0.03 -0.51 12.20 85.11 1.04 0.52 16 22 C -0.03 -0.49 12.20 85.11 1.04 0.55 16 23 N -0.31 -7.63 12.05 -56.86 -0.69 -8.32 16 24 C -0.13 -4.78 5.20 29.39 0.15 -4.62 16 25 C 0.16 6.84 5.66 87.37 0.49 7.34 16 26 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 27 H -0.01 -0.60 8.03 -2.39 -0.02 -0.62 16 28 H 0.05 2.51 6.33 -2.39 -0.02 2.50 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.05 1.73 7.31 -2.39 -0.02 1.71 16 31 H 0.06 2.24 7.48 -2.38 -0.02 2.22 16 32 H 0.09 2.03 8.04 -2.39 -0.02 2.01 16 33 H 0.42 5.87 8.61 -92.71 -0.80 5.07 16 34 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.17 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.23 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.23 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 1.77 7.95 -2.39 -0.02 1.75 16 40 H 0.04 1.63 7.98 -2.39 -0.02 1.61 16 41 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 Total: -1.00 -78.62 335.50 2.66 -75.96 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.24 Total: 12.63 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.02 Total: 11.43 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -5.58 Total: -124.66 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.62 2.66 -75.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052418219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.408 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds