Wall clock time and date at job start Tue Mar 31 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46948 * 269.99912 * 3 2 1 5 5 H 1.48503 * 109.46897 * 29.99341 * 3 2 1 6 6 H 1.48493 * 109.47390 * 149.99956 * 3 2 1 7 7 C 1.38809 * 120.00628 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00849 * 160.40738 * 7 2 1 9 9 N 1.36942 * 119.99851 * 340.41353 * 7 2 1 10 10 C 1.43430 * 120.54173 * 156.68556 * 9 7 2 11 11 C 1.54902 * 116.07704 * 271.59324 * 10 9 7 12 12 C 1.54838 * 110.14530 * 318.63570 * 11 10 9 13 13 C 1.50311 * 110.69163 * 321.13358 * 12 11 10 14 14 H 1.09000 * 110.38527 * 338.84805 * 13 12 11 15 15 N 1.46493 * 110.19996 * 216.73324 * 13 12 11 16 16 C 1.34780 * 120.00273 * 159.15271 * 15 13 12 17 17 O 1.21279 * 119.99716 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00048 * 179.97438 * 16 15 13 19 19 N 1.46505 * 109.46787 * 179.97438 * 18 16 15 20 20 N 1.28600 * 124.61960 * 269.69992 * 19 18 16 21 21 C 1.31378 * 108.71678 * 179.83403 * 20 19 18 22 22 C 1.39682 * 105.89892 * 0.41571 * 21 20 19 23 23 N 1.28602 * 124.61363 * 90.00599 * 19 18 16 24 24 C 1.52530 * 105.32658 * 97.83620 * 13 12 11 25 25 C 1.46240 * 114.15907 * 270.40598 * 24 13 12 26 26 H 0.96996 * 119.99871 * 0.02562 * 1 2 3 27 27 H 1.08998 * 108.15929 * 33.30641 * 10 9 7 28 28 H 1.09000 * 108.15934 * 150.08606 * 10 9 7 29 29 H 1.08994 * 109.36142 * 78.84447 * 11 10 9 30 30 H 1.09007 * 109.35522 * 198.43349 * 11 10 9 31 31 H 1.09001 * 109.20959 * 81.47609 * 12 11 10 32 32 H 1.08994 * 109.21521 * 200.83695 * 12 11 10 33 33 H 0.97010 * 119.99905 * 339.15234 * 15 13 12 34 34 H 1.08996 * 109.47478 * 300.00519 * 18 16 15 35 35 H 1.09006 * 109.46797 * 60.00542 * 18 16 15 36 36 H 1.07996 * 127.05614 * 180.16596 * 21 20 19 37 37 H 1.07997 * 127.04739 * 179.77041 * 22 21 20 38 38 H 1.09002 * 108.51998 * 149.24555 * 24 13 12 39 39 H 1.08996 * 108.52470 * 31.57152 * 24 13 12 40 40 H 1.09006 * 109.84385 * 177.99239 * 25 24 13 41 41 H 1.09004 * 109.84534 * 298.97594 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0435 -1.2293 -0.3131 9 7 1.3852 -2.3536 0.3986 10 6 1.8646 -3.6323 -0.0400 11 6 1.2866 -4.1533 -1.3793 12 6 -0.2320 -3.8606 -1.4546 13 6 -0.8807 -4.0719 -0.1152 14 1 -0.2645 -4.7211 0.5068 15 7 -2.2166 -4.6484 -0.2855 16 6 -2.8043 -5.3010 0.7369 17 8 -2.2274 -5.4104 1.7980 18 6 -4.1788 -5.8935 0.5619 19 7 -4.5921 -6.5447 1.8075 20 7 -4.3698 -7.7780 2.0958 21 6 -4.8687 -8.0296 3.2848 22 6 -5.4406 -6.8322 3.7210 23 7 -5.2315 -5.9620 2.7591 24 6 -0.9804 -2.6833 0.5080 25 6 0.1862 -2.2980 1.3011 26 1 -0.4850 0.8400 -0.0004 27 1 2.9486 -3.5733 -0.1378 28 1 1.6349 -4.3648 0.7338 29 1 1.7917 -3.6574 -2.2081 30 1 1.4512 -5.2286 -1.4498 31 1 -0.3830 -2.8277 -1.7685 32 1 -0.6902 -4.5278 -2.1846 33 1 -2.6782 -4.5605 -1.1342 34 1 -4.8864 -5.1028 0.3126 35 1 -4.1577 -6.6290 -0.2425 36 1 -4.8455 -8.9704 3.8146 37 1 -5.9499 -6.6574 4.6571 38 1 -1.8606 -2.6545 1.1503 39 1 -1.1122 -1.9538 -0.2911 40 1 0.0565 -1.2850 1.6821 41 1 0.3152 -2.9927 2.1311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052418220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:12 Heat of formation + Delta-G solvation = 111.744358 kcal Electronic energy + Delta-G solvation = -24110.861301 eV Core-core repulsion = 20643.991868 eV Total energy + Delta-G solvation = -3466.869432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.56124 -39.82008 -37.72527 -34.69079 -33.80031 -32.55483 -32.43268 -31.05763 -30.53345 -28.36165 -26.05781 -24.01670 -23.12740 -22.91902 -22.10909 -20.43821 -20.06122 -19.23926 -17.61094 -17.54665 -16.67221 -15.85160 -15.67899 -15.50806 -14.89892 -14.66887 -14.46680 -13.95694 -13.81268 -13.69417 -13.33925 -12.94324 -12.54414 -12.02548 -11.84626 -11.67440 -11.44493 -11.24047 -10.84285 -10.82332 -10.75536 -10.43474 -10.33905 -10.21571 -10.14457 -9.96210 -9.80850 -9.56632 -9.30009 -9.23500 -8.74257 -8.37436 -6.72492 -5.80006 -3.18687 1.71350 2.11861 2.47097 2.59508 3.30694 3.37034 3.45087 3.48107 4.10293 4.50674 4.60695 4.69365 4.76588 5.01645 5.28568 5.31666 5.38817 5.56635 5.62270 5.71196 5.94468 6.07786 6.12929 6.20757 6.26746 6.42247 6.45417 6.55553 6.62817 6.82488 6.85776 6.90295 7.02523 7.09265 7.21415 7.55073 7.65294 7.72906 7.93285 8.27432 8.29457 8.42236 9.18341 9.86435 10.39902 11.27391 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.003653 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.115595 B = 7662.764304 C = 8105.816602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.140 4.140 12 C -0.112 4.112 13 C 0.147 3.853 14 H 0.084 0.916 15 N -0.712 5.712 16 C 0.497 3.503 17 O -0.519 6.519 18 C 0.121 3.879 19 N -0.141 5.141 20 N -0.283 5.283 21 C -0.028 4.028 22 C -0.028 4.028 23 N -0.279 5.279 24 C -0.132 4.132 25 C 0.169 3.831 26 H 0.252 0.748 27 H 0.034 0.966 28 H 0.028 0.972 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.396 0.604 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.197 0.803 37 H 0.197 0.803 38 H 0.029 0.971 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 -13.108 -0.485 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.024 3.976 11 C -0.182 4.182 12 C -0.150 4.150 13 C 0.044 3.956 14 H 0.102 0.898 15 N -0.363 5.363 16 C 0.280 3.720 17 O -0.394 6.394 18 C -0.004 4.004 19 N -0.041 5.041 20 N -0.123 5.123 21 C -0.211 4.211 22 C -0.211 4.211 23 N -0.119 5.119 24 C -0.171 4.171 25 C 0.045 3.955 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.230 0.770 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.214 0.786 37 H 0.214 0.786 38 H 0.048 0.952 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -10.008 -12.391 -0.876 15.952 hybrid contribution -0.177 0.527 0.266 0.616 sum -10.185 -11.864 -0.609 15.648 Atomic orbital electron populations 1.69954 1.05106 1.25194 1.54417 1.24877 0.95224 0.98160 1.01328 0.86348 0.79275 0.83899 0.77546 1.21630 1.21665 1.20654 1.19210 0.93628 0.85403 1.39450 0.91523 1.44263 1.33745 1.00894 1.52058 1.20439 0.96523 0.88217 0.92383 1.22835 0.94857 0.98474 1.02001 1.21732 0.96114 1.02533 0.94608 1.20612 0.80400 0.96214 0.98349 0.89777 1.46180 1.19922 1.55814 1.14430 1.20313 0.87052 0.79526 0.85144 1.90795 1.64315 1.58190 1.26137 1.21755 0.96819 0.99826 0.82005 1.47317 1.37879 1.04259 1.14676 1.74023 1.20162 1.00266 1.17864 1.24756 1.02010 1.01359 0.92939 1.24775 1.05432 0.90486 1.00367 1.74070 1.12525 1.26893 0.98432 1.21340 0.98922 0.94440 1.02424 1.20090 0.84936 1.00579 0.89915 0.93793 0.94786 0.95342 0.92558 0.93673 0.89917 0.93987 0.76965 0.84631 0.84773 0.78636 0.78616 0.95209 0.87860 0.89052 0.97328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 9.43 55.49 0.52 -23.95 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.31 29.60 -169.99 -5.03 16.28 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.59 9.63 -15.06 -0.14 -6.73 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.38 2.60 -175.08 -0.46 -14.84 16 10 C 0.15 3.22 5.18 -4.66 -0.02 3.20 16 11 C -0.14 -2.53 6.41 -24.76 -0.16 -2.69 16 12 C -0.11 -1.94 5.31 -27.10 -0.14 -2.09 16 13 C 0.15 2.66 2.18 -69.52 -0.15 2.51 16 14 H 0.08 1.72 5.81 -51.93 -0.30 1.41 16 15 N -0.71 -10.05 5.01 -55.36 -0.28 -10.33 16 16 C 0.50 7.57 7.75 -10.98 -0.09 7.49 16 17 O -0.52 -10.65 16.15 5.56 0.09 -10.56 16 18 C 0.12 1.32 7.02 -5.19 -0.04 1.28 16 19 N -0.14 -1.98 3.44 -11.66 -0.04 -2.02 16 20 N -0.28 -3.95 12.05 30.67 0.37 -3.58 16 21 C -0.03 -0.31 12.20 -17.21 -0.21 -0.52 16 22 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 23 N -0.28 -4.03 12.05 30.68 0.37 -3.66 16 24 C -0.13 -2.84 4.74 -30.18 -0.14 -2.99 16 25 C 0.17 4.07 5.24 -5.20 -0.03 4.05 16 26 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.03 0.71 7.99 -51.93 -0.41 0.29 16 28 H 0.03 0.58 6.87 -51.93 -0.36 0.23 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.69 6.82 -51.93 -0.35 1.33 16 32 H 0.04 0.60 7.81 -51.93 -0.41 0.19 16 33 H 0.40 4.08 8.45 -40.82 -0.34 3.73 16 34 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.20 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.03 0.65 7.90 -51.93 -0.41 0.24 16 39 H 0.10 2.47 5.28 -51.93 -0.27 2.20 16 40 H 0.09 2.45 6.05 -51.93 -0.31 2.14 16 41 H 0.01 0.21 8.12 -51.93 -0.42 -0.22 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -34.01 330.37 -6.58 -40.59 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.68 Total: 4.15 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.42 Total: 2.95 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.49 Total: -58.38 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.01 -6.58 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052418220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.330 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds