Wall clock time and date at job start Tue Mar 31 2020 03:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00191 * 2 1 4 4 H 1.48497 * 109.47406 * 275.57820 * 3 2 1 5 5 H 1.48506 * 109.46838 * 35.57731 * 3 2 1 6 6 H 1.48494 * 109.47144 * 155.57555 * 3 2 1 7 7 C 1.38807 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00107 * 336.33905 * 7 2 1 9 9 N 1.36939 * 120.00045 * 156.34173 * 7 2 1 10 10 C 1.43429 * 120.53726 * 320.20656 * 9 7 2 11 11 C 1.54903 * 116.08274 * 271.58948 * 10 9 7 12 12 C 1.54840 * 110.14127 * 318.64541 * 11 10 9 13 13 C 1.50130 * 110.81487 * 321.12811 * 12 11 10 14 14 H 1.09000 * 110.24859 * 338.71185 * 13 12 11 15 15 N 1.46497 * 110.25287 * 216.79841 * 13 12 11 16 16 C 1.34774 * 120.00045 * 154.99521 * 15 13 12 17 17 O 1.21275 * 120.00054 * 0.02562 * 16 15 13 18 18 C 1.50708 * 119.99972 * 180.02562 * 16 15 13 19 19 C 1.50694 * 109.47163 * 180.02562 * 18 16 15 20 20 N 1.33242 * 125.52637 * 89.99736 * 19 18 16 21 21 C 1.30827 * 109.82980 * 179.97438 * 20 19 18 22 22 N 1.34436 * 108.07973 * 0.02562 * 21 20 19 23 23 H 0.96994 * 126.82563 * 179.97438 * 22 21 20 24 24 N 1.30710 * 125.52823 * 269.69796 * 19 18 16 25 25 C 1.52532 * 105.41809 * 97.68258 * 13 12 11 26 26 C 1.46237 * 114.28015 * 270.59910 * 25 13 12 27 27 H 0.97003 * 119.99580 * 359.97438 * 1 2 3 28 28 H 1.08998 * 108.15958 * 33.30820 * 10 9 7 29 29 H 1.09005 * 108.15612 * 150.08606 * 10 9 7 30 30 H 1.08998 * 109.36066 * 198.43653 * 11 10 9 31 31 H 1.09004 * 109.35851 * 78.84232 * 11 10 9 32 32 H 1.09000 * 109.21310 * 200.78520 * 12 11 10 33 33 H 1.09001 * 109.21184 * 81.47312 * 12 11 10 34 34 H 0.97006 * 119.99746 * 335.00590 * 15 13 12 35 35 H 1.08997 * 109.46754 * 300.00395 * 18 16 15 36 36 H 1.08997 * 109.46915 * 60.00192 * 18 16 15 37 37 H 1.08002 * 125.96505 * 179.97438 * 21 20 19 38 38 H 1.09003 * 108.52205 * 31.83944 * 25 13 12 39 39 H 1.08995 * 108.52003 * 149.35442 * 25 13 12 40 40 H 1.08992 * 109.84830 * 177.91202 * 26 25 13 41 41 H 1.09004 * 109.84249 * 298.89972 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3799 2.1144 -1.3934 5 1 1.5115 2.6157 0.8146 6 1 3.6017 1.4089 0.5789 7 6 2.0102 -1.2021 -0.0005 8 1 1.5383 -2.0984 0.3745 9 7 3.2933 -1.2518 -0.4764 10 6 3.6668 -0.5072 -1.6440 11 6 3.4691 -1.2256 -3.0021 12 6 3.9070 -2.7066 -2.8905 13 6 5.1376 -2.8365 -2.0404 14 1 5.6682 -1.8853 -1.9969 15 7 6.0148 -3.8813 -2.5743 16 6 7.3377 -3.8458 -2.3195 17 8 7.8020 -2.9491 -1.6478 18 6 8.2402 -4.9203 -2.8692 19 6 9.6601 -4.6507 -2.4425 20 7 10.2324 -5.1024 -1.3273 21 6 11.4706 -4.6848 -1.2634 22 7 11.7179 -3.9435 -2.3573 23 1 12.5511 -3.5017 -2.5840 24 7 10.5316 -3.9403 -3.1091 25 6 4.6337 -3.2238 -0.6538 26 6 4.3319 -2.0872 0.2154 27 1 -0.4850 0.8401 0.0004 28 1 3.0853 0.4146 -1.6595 29 1 4.7199 -0.2405 -1.5543 30 1 4.0684 -0.7281 -3.7646 31 1 2.4175 -1.1802 -3.2852 32 1 4.1171 -3.0946 -3.8872 33 1 3.0996 -3.2867 -2.4435 34 1 5.6434 -4.5987 -3.1114 35 1 7.9242 -5.8908 -2.4867 36 1 8.1816 -4.9222 -3.9576 37 1 12.1716 -4.8977 -0.4699 38 1 3.7295 -3.8216 -0.7685 39 1 5.3920 -3.8387 -0.1691 40 1 3.9444 -2.4437 1.1697 41 1 5.2334 -1.4965 0.3785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052853235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:51 Heat of formation + Delta-G solvation = 80.844758 kcal Electronic energy + Delta-G solvation = -23778.678027 eV Core-core repulsion = 20310.468687 eV Total energy + Delta-G solvation = -3468.209340 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32162 -39.84905 -37.88884 -34.78096 -33.52460 -32.42925 -31.87860 -31.81495 -30.73938 -29.01407 -26.17522 -24.24012 -23.21990 -23.03990 -21.45124 -20.20363 -20.00436 -19.48523 -18.56389 -17.11987 -16.43231 -16.28493 -15.69968 -15.40164 -14.95772 -14.80468 -14.51748 -14.04327 -13.82702 -13.49469 -13.39428 -12.81514 -12.55407 -12.38810 -12.25989 -12.00647 -11.78242 -11.59773 -11.05361 -10.69411 -10.48635 -10.45420 -10.40693 -10.27285 -10.11095 -10.00516 -9.89487 -9.63514 -9.61937 -9.40865 -8.80144 -8.40340 -6.69325 -5.97099 -3.38834 1.37772 2.40086 2.58825 2.72462 3.36843 3.37658 3.51514 3.60377 3.87030 4.37815 4.58298 4.65240 4.84545 4.98920 5.12658 5.23490 5.29396 5.34244 5.42234 5.62170 5.93469 5.96118 5.96769 5.97338 6.13292 6.25422 6.32050 6.36937 6.54462 6.58137 6.73185 6.76953 6.82035 6.83220 6.92300 6.95483 7.04273 7.62868 7.83979 8.13595 8.33864 8.40806 9.06762 9.76355 10.22587 11.18493 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030234 B = 0.003437 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.883395 B = 8145.387816 C = 8373.024645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.040 3.960 3 Si 0.875 3.125 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.075 0.925 9 N -0.600 5.600 10 C 0.146 3.854 11 C -0.137 4.137 12 C -0.113 4.113 13 C 0.149 3.851 14 H 0.093 0.907 15 N -0.721 5.721 16 C 0.519 3.481 17 O -0.529 6.529 18 C -0.051 4.051 19 C 0.251 3.749 20 N -0.534 5.534 21 C 0.262 3.738 22 N -0.485 5.485 23 H 0.441 0.559 24 N -0.305 5.305 25 C -0.137 4.137 26 C 0.139 3.861 27 H 0.263 0.737 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.397 0.603 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.223 0.777 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.783 -11.670 -7.528 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.093 0.907 9 N -0.323 5.323 10 C 0.018 3.982 11 C -0.178 4.178 12 C -0.151 4.151 13 C 0.046 3.954 14 H 0.111 0.889 15 N -0.372 5.372 16 C 0.303 3.697 17 O -0.405 6.405 18 C -0.093 4.093 19 C -0.032 4.032 20 N -0.262 5.262 21 C -0.037 4.037 22 N -0.203 5.203 23 H 0.286 0.714 24 N -0.135 5.135 25 C -0.177 4.177 26 C 0.015 3.985 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.231 0.769 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.239 0.761 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 20.583 -10.808 -7.413 24.401 hybrid contribution 0.965 0.892 -0.230 1.335 sum 21.548 -9.916 -7.643 24.921 Atomic orbital electron populations 1.69897 1.06073 1.26726 1.51230 1.25524 0.94999 0.97804 0.97769 0.86927 0.80834 0.84701 0.77010 1.21379 1.22970 1.19414 1.18710 0.86937 0.94185 1.39609 0.90740 1.44207 1.07700 1.55808 1.24626 1.20689 0.96984 0.94157 0.86389 1.22744 1.01056 0.94527 0.99478 1.21696 0.96493 0.98888 0.98018 1.20369 0.90259 0.90822 0.93980 0.88888 1.46164 1.06886 1.29561 1.54597 1.20103 0.82694 0.86308 0.80632 1.90745 1.75109 1.36273 1.38323 1.19927 0.85811 1.00486 1.03112 1.23301 0.96208 0.94025 0.89662 1.70359 1.06228 1.28313 1.21251 1.26071 0.94686 0.91056 0.91890 1.48071 1.13241 1.41382 1.17577 0.71358 1.77970 0.92534 1.23517 1.19434 1.21297 1.00217 1.00436 0.95740 1.20375 0.91766 0.91515 0.94851 0.92767 0.93976 0.95281 0.93206 0.91720 0.93227 0.90675 0.76891 0.86029 0.86578 0.76112 0.91686 0.93368 0.91326 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.97 55.49 0.78 -26.65 16 2 C 0.04 1.16 5.28 -17.43 -0.09 1.06 16 3 Si 0.88 22.74 25.26 -169.99 -4.29 18.45 16 4 H -0.29 -7.24 6.73 56.52 0.38 -6.86 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 6 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.27 -7.41 9.92 -15.06 -0.15 -7.56 16 8 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 9 N -0.60 -14.36 2.14 -175.08 -0.37 -14.73 16 10 C 0.15 3.25 4.22 -4.66 -0.02 3.23 16 11 C -0.14 -2.56 6.41 -24.76 -0.16 -2.72 16 12 C -0.11 -1.80 5.30 -27.19 -0.14 -1.95 16 13 C 0.15 2.41 2.23 -69.60 -0.16 2.26 16 14 H 0.09 1.76 5.70 -51.93 -0.30 1.47 16 15 N -0.72 -9.10 4.96 -55.44 -0.27 -9.37 16 16 C 0.52 7.29 7.82 -10.98 -0.09 7.21 16 17 O -0.53 -10.03 15.69 5.56 0.09 -9.95 16 18 C -0.05 -0.52 6.33 -29.03 -0.18 -0.71 16 19 C 0.25 3.22 6.63 -156.86 -1.04 2.18 16 20 N -0.53 -6.62 11.19 -11.98 -0.13 -6.76 16 21 C 0.26 2.17 13.13 -90.65 -1.19 0.98 16 22 N -0.48 -4.10 7.45 29.53 0.22 -3.88 16 23 H 0.44 1.94 8.96 -182.34 -1.63 0.31 16 24 N -0.31 -3.86 12.80 32.42 0.41 -3.44 16 25 C -0.14 -2.41 4.92 -30.18 -0.15 -2.56 16 26 C 0.14 2.88 6.11 -5.20 -0.03 2.85 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.04 1.04 3.40 -51.93 -0.18 0.86 16 29 H 0.03 0.62 6.88 -51.93 -0.36 0.26 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.05 0.65 7.85 -51.93 -0.41 0.25 16 33 H 0.07 1.30 6.83 -51.93 -0.35 0.95 16 34 H 0.40 3.58 8.53 -40.82 -0.35 3.23 16 35 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.22 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.06 1.16 6.93 -51.93 -0.36 0.80 16 39 H 0.05 0.82 8.02 -51.93 -0.42 0.40 16 40 H 0.07 1.42 7.99 -51.93 -0.42 1.00 16 41 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -37.85 328.89 -8.90 -46.75 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.88 Total: 0.36 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -3.40 Total: 4.27 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: 0.63 Total: -64.84 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.29 Total: 18.45 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.85 -8.90 -46.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052853235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.593 kcal (2) G-P(sol) polarization free energy of solvation -37.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds