Wall clock time and date at job start Tue Mar 31 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00191 * 2 1 4 4 H 1.48497 * 109.47406 * 275.57820 * 3 2 1 5 5 H 1.48506 * 109.46838 * 35.57731 * 3 2 1 6 6 H 1.48494 * 109.47144 * 155.57555 * 3 2 1 7 7 C 1.38807 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00107 * 336.33905 * 7 2 1 9 9 N 1.36939 * 120.00045 * 156.34173 * 7 2 1 10 10 C 1.43429 * 120.53726 * 320.20656 * 9 7 2 11 11 C 1.54903 * 116.08274 * 271.58948 * 10 9 7 12 12 C 1.54840 * 110.14127 * 318.64541 * 11 10 9 13 13 C 1.50130 * 110.81487 * 321.12811 * 12 11 10 14 14 H 1.09000 * 110.24859 * 338.71185 * 13 12 11 15 15 N 1.46497 * 110.25287 * 216.79841 * 13 12 11 16 16 C 1.34774 * 120.00045 * 154.99521 * 15 13 12 17 17 O 1.21275 * 120.00054 * 0.02562 * 16 15 13 18 18 C 1.50708 * 119.99972 * 180.02562 * 16 15 13 19 19 C 1.50694 * 109.47163 * 180.02562 * 18 16 15 20 20 N 1.33242 * 125.52637 * 89.99736 * 19 18 16 21 21 C 1.30827 * 109.82980 * 179.97438 * 20 19 18 22 22 N 1.34436 * 108.07973 * 0.02562 * 21 20 19 23 23 H 0.96994 * 126.82563 * 179.97438 * 22 21 20 24 24 N 1.30710 * 125.52823 * 269.69796 * 19 18 16 25 25 C 1.52532 * 105.41809 * 97.68258 * 13 12 11 26 26 C 1.46237 * 114.28015 * 270.59910 * 25 13 12 27 27 H 0.97003 * 119.99580 * 359.97438 * 1 2 3 28 28 H 1.08998 * 108.15958 * 33.30820 * 10 9 7 29 29 H 1.09005 * 108.15612 * 150.08606 * 10 9 7 30 30 H 1.08998 * 109.36066 * 198.43653 * 11 10 9 31 31 H 1.09004 * 109.35851 * 78.84232 * 11 10 9 32 32 H 1.09000 * 109.21310 * 200.78520 * 12 11 10 33 33 H 1.09001 * 109.21184 * 81.47312 * 12 11 10 34 34 H 0.97006 * 119.99746 * 335.00590 * 15 13 12 35 35 H 1.08997 * 109.46754 * 300.00395 * 18 16 15 36 36 H 1.08997 * 109.46915 * 60.00192 * 18 16 15 37 37 H 1.08002 * 125.96505 * 179.97438 * 21 20 19 38 38 H 1.09003 * 108.52205 * 31.83944 * 25 13 12 39 39 H 1.08995 * 108.52003 * 149.35442 * 25 13 12 40 40 H 1.08992 * 109.84830 * 177.91202 * 26 25 13 41 41 H 1.09004 * 109.84249 * 298.89972 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3799 2.1144 -1.3934 5 1 1.5115 2.6157 0.8146 6 1 3.6017 1.4089 0.5789 7 6 2.0102 -1.2021 -0.0005 8 1 1.5383 -2.0984 0.3745 9 7 3.2933 -1.2518 -0.4764 10 6 3.6668 -0.5072 -1.6440 11 6 3.4691 -1.2256 -3.0021 12 6 3.9070 -2.7066 -2.8905 13 6 5.1376 -2.8365 -2.0404 14 1 5.6682 -1.8853 -1.9969 15 7 6.0148 -3.8813 -2.5743 16 6 7.3377 -3.8458 -2.3195 17 8 7.8020 -2.9491 -1.6478 18 6 8.2402 -4.9203 -2.8692 19 6 9.6601 -4.6507 -2.4425 20 7 10.2324 -5.1024 -1.3273 21 6 11.4706 -4.6848 -1.2634 22 7 11.7179 -3.9435 -2.3573 23 1 12.5511 -3.5017 -2.5840 24 7 10.5316 -3.9403 -3.1091 25 6 4.6337 -3.2238 -0.6538 26 6 4.3319 -2.0872 0.2154 27 1 -0.4850 0.8401 0.0004 28 1 3.0853 0.4146 -1.6595 29 1 4.7199 -0.2405 -1.5543 30 1 4.0684 -0.7281 -3.7646 31 1 2.4175 -1.1802 -3.2852 32 1 4.1171 -3.0946 -3.8872 33 1 3.0996 -3.2867 -2.4435 34 1 5.6434 -4.5987 -3.1114 35 1 7.9242 -5.8908 -2.4867 36 1 8.1816 -4.9222 -3.9576 37 1 12.1716 -4.8977 -0.4699 38 1 3.7295 -3.8216 -0.7685 39 1 5.3920 -3.8387 -0.1691 40 1 3.9444 -2.4437 1.1697 41 1 5.2334 -1.4965 0.3785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052853235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:50 Heat of formation + Delta-G solvation = 52.582050 kcal Electronic energy + Delta-G solvation = -23779.903590 eV Core-core repulsion = 20310.468687 eV Total energy + Delta-G solvation = -3469.434903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.04954 -41.07258 -39.37137 -36.33774 -34.40201 -34.08541 -33.41914 -32.78061 -32.28869 -29.95569 -27.92787 -25.72272 -25.07604 -23.76057 -22.47544 -21.62437 -21.38990 -20.77024 -19.25000 -18.49089 -18.03717 -17.80838 -16.82991 -16.45590 -16.34211 -16.06714 -15.78937 -15.54741 -15.12254 -14.95015 -14.67514 -14.33119 -14.23642 -13.86979 -13.51129 -13.22814 -13.12767 -12.98804 -12.75376 -12.52499 -12.28944 -11.99301 -11.88735 -11.61047 -11.36510 -11.24229 -11.19537 -11.05956 -10.92785 -10.56839 -10.55418 -10.01635 -8.68738 -8.21274 -5.59364 0.66610 1.28831 1.38711 1.50894 1.67221 1.73340 1.87711 2.40314 2.41860 3.03194 3.20111 3.29205 3.69932 3.84410 3.87569 4.04058 4.17076 4.20251 4.39981 4.42641 4.48375 4.49440 4.60944 4.69972 4.84020 4.92662 5.02090 5.05030 5.12308 5.21927 5.25890 5.33415 5.37866 5.45653 5.48077 5.65593 5.97148 6.18096 6.27706 6.63684 7.01003 7.11883 7.33188 7.62988 8.11858 8.98405 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030234 B = 0.003437 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.883395 B = 8145.387816 C = 8373.024645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.009 4.009 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.252 4.252 8 H 0.044 0.956 9 N -0.610 5.610 10 C 0.138 3.862 11 C -0.133 4.133 12 C -0.103 4.103 13 C 0.160 3.840 14 H 0.069 0.931 15 N -0.705 5.705 16 C 0.519 3.481 17 O -0.582 6.582 18 C -0.044 4.044 19 C 0.232 3.768 20 N -0.575 5.575 21 C 0.273 3.727 22 N -0.477 5.477 23 H 0.457 0.543 24 N -0.341 5.341 25 C -0.129 4.129 26 C 0.140 3.860 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.419 0.581 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.271 0.729 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.162 -12.816 -8.876 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.207 4.207 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.382 4.382 8 H 0.062 0.938 9 N -0.334 5.334 10 C 0.012 3.988 11 C -0.174 4.174 12 C -0.141 4.141 13 C 0.055 3.945 14 H 0.087 0.913 15 N -0.357 5.357 16 C 0.305 3.695 17 O -0.462 6.462 18 C -0.086 4.086 19 C -0.051 4.051 20 N -0.304 5.304 21 C -0.025 4.025 22 N -0.196 5.196 23 H 0.306 0.694 24 N -0.172 5.172 25 C -0.168 4.168 26 C 0.017 3.983 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.257 0.743 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.286 0.714 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 23.008 -11.984 -8.809 27.397 hybrid contribution 0.338 1.186 0.233 1.256 sum 23.346 -10.798 -8.576 27.115 Atomic orbital electron populations 1.69992 1.07425 1.27371 1.53750 1.26024 0.95488 1.00605 0.98549 0.85980 0.79211 0.81192 0.77296 1.20283 1.23341 1.19549 1.18604 0.88356 0.93008 1.38208 0.93790 1.44291 1.06951 1.56413 1.25740 1.20784 0.96850 0.93605 0.87603 1.22652 1.00740 0.96373 0.97632 1.21575 0.95732 0.96794 1.00046 1.19992 0.90421 0.90881 0.93220 0.91308 1.45909 1.06277 1.29241 1.54265 1.20748 0.82994 0.86249 0.79531 1.90724 1.76049 1.38583 1.40801 1.20022 0.83965 0.99837 1.04752 1.23722 0.97138 0.94237 0.90004 1.70349 1.08148 1.30066 1.21867 1.26997 0.94305 0.89114 0.92121 1.48022 1.13034 1.41258 1.17303 0.69450 1.77852 0.93888 1.24345 1.21066 1.21134 1.00428 0.98922 0.96362 1.20446 0.90579 0.92047 0.95268 0.92774 0.96348 0.94404 0.90541 0.93323 0.89407 0.92043 0.74345 0.83428 0.83645 0.71371 0.91841 0.92493 0.91940 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.86 13.97 21.65 0.30 -58.55 16 2 C -0.01 -0.56 5.28 84.86 0.45 -0.11 16 3 Si 0.93 47.80 25.26 68.60 1.73 49.53 16 4 H -0.28 -13.52 6.73 99.48 0.67 -12.85 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.27 -13.73 7.11 99.48 0.71 -13.03 16 7 C -0.25 -14.33 9.92 84.03 0.83 -13.50 16 8 H 0.04 2.74 8.06 -2.91 -0.02 2.71 16 9 N -0.61 -29.23 2.14 -707.82 -1.51 -30.75 16 10 C 0.14 6.08 4.22 87.60 0.37 6.45 16 11 C -0.13 -4.75 6.41 31.87 0.20 -4.55 16 12 C -0.10 -3.05 5.30 30.30 0.16 -2.89 16 13 C 0.16 4.84 2.23 43.91 0.10 4.94 16 14 H 0.07 2.51 5.70 -2.39 -0.01 2.49 16 15 N -0.70 -15.72 4.96 -447.71 -2.22 -17.93 16 16 C 0.52 13.46 7.82 87.66 0.69 14.15 16 17 O -0.58 -21.55 15.69 -3.01 -0.05 -21.60 16 18 C -0.04 -0.78 6.33 29.10 0.18 -0.60 16 19 C 0.23 5.54 6.63 138.63 0.92 6.46 16 20 N -0.58 -13.24 11.19 -191.81 -2.15 -15.39 16 21 C 0.27 3.85 13.13 180.36 2.37 6.21 16 22 N -0.48 -7.14 7.45 -60.49 -0.45 -7.59 16 23 H 0.46 3.11 8.96 -213.10 -1.91 1.20 16 24 N -0.34 -8.11 12.80 -51.34 -0.66 -8.77 16 25 C -0.13 -4.38 4.92 28.36 0.14 -4.24 16 26 C 0.14 5.78 6.11 83.58 0.51 6.29 16 27 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.02 0.90 3.40 -2.39 -0.01 0.89 16 29 H 0.04 1.58 6.88 -2.38 -0.02 1.57 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 32 H 0.09 1.94 7.85 -2.39 -0.02 1.93 16 33 H 0.06 2.01 6.83 -2.39 -0.02 2.00 16 34 H 0.42 5.86 8.53 -92.70 -0.79 5.07 16 35 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.27 0.54 8.06 -2.91 -0.02 0.51 16 38 H 0.06 2.19 6.93 -2.39 -0.02 2.18 16 39 H 0.06 1.85 8.02 -2.39 -0.02 1.83 16 40 H 0.06 2.61 7.99 -2.39 -0.02 2.59 16 41 H 0.03 1.31 8.12 -2.38 -0.02 1.29 16 Total: -1.00 -84.81 328.89 0.27 -84.54 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -1.66 Total: 7.90 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 6.92 Total: 18.62 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -6.68 Total: -138.99 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.73 Total: 49.53 kcal Total: -84.81 0.27 -84.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052853235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.121 kcal (2) G-P(sol) polarization free energy of solvation -84.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds