Wall clock time and date at job start Tue Mar 31 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00206 * 2 1 4 4 H 1.48501 * 109.47063 * 270.00158 * 3 2 1 5 5 H 1.48497 * 109.46970 * 30.00243 * 3 2 1 6 6 H 1.48503 * 109.47022 * 150.00084 * 3 2 1 7 7 C 1.38814 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00117 * 195.64435 * 7 2 1 9 9 N 1.36943 * 119.99929 * 15.65075 * 7 2 1 10 10 C 1.47604 * 118.64252 * 26.49247 * 9 7 2 11 11 C 1.53919 * 112.15965 * 137.88276 * 10 9 7 12 12 C 1.50886 * 110.08077 * 319.40570 * 11 10 9 13 13 C 1.52565 * 109.35646 * 91.89696 * 12 11 10 14 14 H 1.09004 * 108.51151 * 36.23626 * 13 12 11 15 15 N 1.46497 * 108.51538 * 153.88883 * 13 12 11 16 16 C 1.34771 * 120.00091 * 205.00418 * 15 13 12 17 17 O 1.21278 * 120.00629 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99936 * 179.97438 * 16 15 13 19 19 N 1.46502 * 109.47045 * 179.97438 * 18 16 15 20 20 C 1.34431 * 126.82122 * 125.00335 * 19 18 16 21 21 N 1.30831 * 108.07420 * 179.97438 * 20 19 18 22 22 C 1.33244 * 109.83010 * 359.97438 * 21 20 19 23 23 N 1.30715 * 108.94623 * 359.75622 * 22 21 20 24 24 C 1.47097 * 114.32512 * 274.98830 * 13 12 11 25 25 C 1.44579 * 118.64076 * 206.46874 * 9 7 2 26 26 H 0.97000 * 119.99537 * 359.97438 * 1 2 3 27 27 H 1.09002 * 108.94565 * 258.55405 * 10 9 7 28 28 H 1.08994 * 108.94951 * 17.26849 * 10 9 7 29 29 H 1.09003 * 109.36172 * 199.22589 * 11 10 9 30 30 H 1.08993 * 109.37968 * 79.60276 * 11 10 9 31 31 H 1.08999 * 109.48801 * 331.93365 * 12 11 10 32 32 H 1.08997 * 109.48786 * 211.86188 * 12 11 10 33 33 H 0.97003 * 119.99452 * 24.99627 * 15 13 12 34 34 H 1.09000 * 109.47016 * 299.99334 * 18 16 15 35 35 H 1.08999 * 109.47372 * 59.99757 * 18 16 15 36 36 H 1.07999 * 125.96179 * 359.97438 * 20 19 18 37 37 H 1.08004 * 125.52398 * 180.02562 * 22 21 20 38 38 H 1.08999 * 109.32670 * 183.06540 * 24 13 12 39 39 H 1.08997 * 109.32443 * 302.53571 * 24 13 12 40 40 H 1.09001 * 109.44389 * 150.68619 * 25 9 7 41 41 H 1.08993 * 109.45035 * 30.76641 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0602 -1.2195 0.2528 9 7 1.3636 -2.3663 -0.3189 10 6 0.1790 -2.2996 -1.1970 11 6 0.1700 -3.4258 -2.2462 12 6 1.5609 -3.6368 -2.7917 13 6 2.2698 -4.7079 -1.9684 14 1 1.5389 -5.4638 -1.6812 15 7 3.2877 -5.3430 -2.8091 16 6 3.6969 -6.5985 -2.5396 17 8 3.2228 -7.2025 -1.6008 18 6 4.7436 -7.2519 -3.4047 19 7 5.0135 -8.6035 -2.9080 20 6 4.9439 -9.7484 -3.6090 21 7 5.2579 -10.7343 -2.8084 22 6 5.5334 -10.2602 -1.5940 23 7 5.4030 -8.9596 -1.6065 24 6 2.9226 -4.2030 -0.7507 25 6 1.8696 -3.6098 0.2176 26 1 -0.4849 0.8401 0.0004 27 1 -0.7198 -2.3789 -0.5855 28 1 0.1732 -1.3386 -1.7111 29 1 -0.5008 -3.1547 -3.0615 30 1 -0.1807 -4.3482 -1.7836 31 1 2.1202 -2.7031 -2.7325 32 1 1.4988 -3.9588 -3.8312 33 1 3.6671 -4.8598 -3.5598 34 1 4.3831 -7.3073 -4.4319 35 1 5.6606 -6.6636 -3.3727 36 1 4.6755 -9.8385 -4.6512 37 1 5.8223 -10.8538 -0.7392 38 1 3.4466 -5.0211 -0.2567 39 1 3.6408 -3.4290 -1.0210 40 1 1.0472 -4.3153 0.3359 41 1 2.3315 -3.4255 1.1874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052916409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:53 Heat of formation + Delta-G solvation = 62.921660 kcal Electronic energy + Delta-G solvation = -23735.484178 eV Core-core repulsion = 20266.497634 eV Total energy + Delta-G solvation = -3468.986544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.97002 -41.11309 -39.21035 -36.43255 -34.97123 -34.10664 -33.34253 -32.15284 -31.84285 -29.05553 -27.74129 -25.73035 -25.03434 -23.27772 -22.85989 -21.61970 -21.53774 -20.90936 -18.65300 -18.39501 -18.27984 -17.07303 -17.01131 -16.66650 -16.05114 -15.86358 -15.74801 -15.32175 -15.21665 -14.92884 -14.72813 -14.36792 -14.18545 -13.67648 -13.56632 -13.18324 -13.02697 -12.75843 -12.70796 -12.42435 -12.14944 -12.05378 -11.75968 -11.57408 -11.51390 -11.35763 -11.24472 -10.98656 -10.74653 -10.49877 -10.41471 -10.09620 -8.66744 -7.85025 -5.31942 0.72251 1.35246 1.47338 1.48443 1.57277 1.57808 2.04650 2.20984 2.52235 3.28396 3.55178 3.56825 3.64628 3.73987 3.81607 4.10162 4.10973 4.18632 4.32116 4.42593 4.43505 4.44977 4.66155 4.74941 4.95770 4.98460 5.10609 5.14334 5.23473 5.27254 5.31775 5.48304 5.49598 5.55310 5.59059 5.68203 5.81916 5.91812 6.41129 6.58283 7.14910 7.19140 7.27172 7.94094 8.33756 9.20194 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.033185 B = 0.003190 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.544027 B = 8775.194559 C = 8988.262667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.047 4.047 3 Si 0.965 3.035 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.272 1.272 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.186 3.814 11 C -0.130 4.130 12 C -0.099 4.099 13 C 0.173 3.827 14 H 0.053 0.947 15 N -0.710 5.710 16 C 0.492 3.508 17 O -0.571 6.571 18 C 0.113 3.887 19 N -0.377 5.377 20 C 0.264 3.736 21 N -0.578 5.578 22 C 0.183 3.817 23 N -0.340 5.340 24 C -0.134 4.134 25 C 0.159 3.841 26 H 0.249 0.751 27 H -0.012 1.012 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.418 0.582 34 H 0.188 0.812 35 H 0.142 0.858 36 H 0.270 0.730 37 H 0.232 0.768 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.610 -14.264 -15.095 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.061 3.939 11 C -0.170 4.170 12 C -0.137 4.137 13 C 0.069 3.931 14 H 0.071 0.929 15 N -0.363 5.363 16 C 0.277 3.723 17 O -0.449 6.449 18 C -0.012 4.012 19 N -0.168 5.168 20 C -0.031 4.031 21 N -0.306 5.306 22 C -0.120 4.120 23 N -0.167 5.167 24 C -0.175 4.175 25 C 0.031 3.969 26 H 0.058 0.942 27 H 0.006 0.994 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.256 0.744 34 H 0.205 0.795 35 H 0.159 0.841 36 H 0.286 0.714 37 H 0.248 0.752 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.267 -14.380 -13.908 22.047 hybrid contribution 0.082 1.415 0.359 1.462 sum 9.349 -12.965 -13.549 20.954 Atomic orbital electron populations 1.70240 1.06569 1.25692 1.55698 1.25753 0.95989 1.01308 1.01177 0.85309 0.77933 0.79732 0.77703 1.20709 1.22520 1.19737 1.19477 0.92484 0.86015 1.41405 0.91900 1.43862 1.32433 1.02042 1.54010 1.20817 0.86798 0.96364 0.89877 1.21832 0.97376 0.98810 0.98943 1.21116 0.95607 0.98116 0.98861 1.19645 0.89221 0.94060 0.90191 0.92871 1.46136 1.42158 1.14531 1.33466 1.21203 0.83423 0.82137 0.85514 1.90795 1.57733 1.64663 1.31691 1.21995 0.99998 0.79418 0.99776 1.50145 1.50685 1.08611 1.07336 1.27057 0.94902 0.79843 1.01345 1.70520 1.24367 1.32901 1.02780 1.26455 0.98607 0.89832 0.97110 1.78139 1.22605 1.16616 0.99302 1.21568 0.99402 0.99100 0.97397 1.20629 0.94513 0.87431 0.94286 0.94191 0.99367 0.93428 0.90177 0.93177 0.91922 0.88881 0.74428 0.79483 0.84072 0.71438 0.75165 0.93541 0.92507 0.95016 0.94882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.61 11.01 21.65 0.24 -54.37 16 2 C -0.05 -2.57 4.87 84.86 0.41 -2.16 16 3 Si 0.96 44.09 29.58 68.60 2.03 46.12 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.26 -14.19 9.44 84.03 0.79 -13.39 16 8 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 9 N -0.60 -29.51 2.27 -698.44 -1.59 -31.10 16 10 C 0.19 8.73 4.66 86.48 0.40 9.14 16 11 C -0.13 -4.46 5.71 30.22 0.17 -4.28 16 12 C -0.10 -2.83 4.97 29.76 0.15 -2.69 16 13 C 0.17 5.13 1.93 43.01 0.08 5.22 16 14 H 0.05 1.83 6.81 -2.38 -0.02 1.81 16 15 N -0.71 -14.41 4.94 -452.06 -2.23 -16.65 16 16 C 0.49 11.14 7.61 87.66 0.67 11.81 16 17 O -0.57 -20.08 14.92 -3.02 -0.05 -20.12 16 18 C 0.11 1.27 7.03 85.63 0.60 1.87 16 19 N -0.38 -7.19 3.40 -355.80 -1.21 -8.40 16 20 C 0.26 3.97 12.63 180.36 2.28 6.25 16 21 N -0.58 -12.72 11.19 -203.99 -2.28 -15.00 16 22 C 0.18 4.34 13.03 180.76 2.36 6.70 16 23 N -0.34 -9.34 11.84 -61.24 -0.72 -10.07 16 24 C -0.13 -4.80 5.16 29.39 0.15 -4.65 16 25 C 0.16 6.92 5.66 87.37 0.49 7.42 16 26 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 27 H -0.01 -0.63 8.03 -2.39 -0.02 -0.65 16 28 H 0.05 2.48 6.33 -2.39 -0.02 2.46 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.70 7.32 -2.39 -0.02 1.68 16 31 H 0.06 2.10 7.48 -2.39 -0.02 2.09 16 32 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 33 H 0.42 4.98 8.56 -92.71 -0.79 4.19 16 34 H 0.19 -0.14 8.09 -2.39 -0.02 -0.16 16 35 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.27 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.23 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 41 H 0.03 1.50 7.99 -2.39 -0.02 1.48 16 Total: -1.00 -82.96 334.06 2.99 -79.97 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.25 Total: 8.41 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 8.56 Total: 21.21 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -7.80 Total: -135.59 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -82.96 2.99 -79.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052916409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.888 kcal (2) G-P(sol) polarization free energy of solvation -82.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds