Wall clock time and date at job start Tue Mar 31 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99761 * 2 1 4 4 H 1.48499 * 109.47291 * 269.72570 * 3 2 1 5 5 H 1.48496 * 109.47290 * 29.72825 * 3 2 1 6 6 H 1.48505 * 109.47054 * 149.72537 * 3 2 1 7 7 C 1.38810 * 119.99664 * 179.72541 * 2 1 3 8 8 H 1.07998 * 119.99378 * 160.00800 * 7 2 1 9 9 N 1.36934 * 120.00540 * 340.00681 * 7 2 1 10 10 C 1.43431 * 120.53818 * 156.78827 * 9 7 2 11 11 C 1.54409 * 116.38784 * 271.73183 * 10 9 7 12 12 C 1.54846 * 110.06959 * 318.64859 * 11 10 9 13 13 C 1.50121 * 110.81557 * 321.07686 * 12 11 10 14 14 H 1.09000 * 110.25469 * 338.71033 * 13 12 11 15 15 N 1.46507 * 110.24950 * 216.65312 * 13 12 11 16 16 C 1.34771 * 119.99983 * 159.01845 * 15 13 12 17 17 O 1.21283 * 120.00387 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00127 * 179.97438 * 16 15 13 19 19 N 1.46499 * 109.47576 * 180.02562 * 18 16 15 20 20 C 1.34423 * 126.82262 * 125.00066 * 19 18 16 21 21 N 1.30836 * 108.07899 * 179.97438 * 20 19 18 22 22 C 1.33242 * 109.82812 * 359.97438 * 21 20 19 23 23 N 1.30716 * 108.94662 * 359.75651 * 22 21 20 24 24 C 1.52530 * 105.41599 * 97.68554 * 13 12 11 25 25 C 1.46246 * 114.27264 * 270.59194 * 24 13 12 26 26 H 0.96997 * 120.00079 * 0.27076 * 1 2 3 27 27 H 1.09001 * 108.16126 * 33.30134 * 10 9 7 28 28 H 1.09000 * 108.16068 * 149.88008 * 10 9 7 29 29 H 1.09002 * 109.44111 * 198.43774 * 11 10 9 30 30 H 1.08995 * 109.24063 * 78.73755 * 11 10 9 31 31 H 1.09003 * 109.20938 * 200.73261 * 12 11 10 32 32 H 1.09003 * 109.20779 * 81.41908 * 12 11 10 33 33 H 0.96993 * 119.99641 * 339.02250 * 15 13 12 34 34 H 1.09002 * 109.47184 * 300.00760 * 18 16 15 35 35 H 1.09007 * 109.46908 * 60.00513 * 18 16 15 36 36 H 1.07998 * 125.96260 * 359.93083 * 20 19 18 37 37 H 1.07995 * 125.53014 * 180.02562 * 22 21 20 38 38 H 1.09000 * 108.52746 * 149.35357 * 24 13 12 39 39 H 1.08997 * 108.39915 * 31.73884 * 24 13 12 40 40 H 1.08995 * 109.84528 * 298.89727 * 25 24 13 41 41 H 1.08999 * 109.89690 * 177.94326 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5035 2.0431 -1.4000 5 1 1.4448 2.6543 0.6943 6 1 3.5449 1.4419 0.7059 7 6 2.0102 -1.2022 0.0058 8 1 3.0414 -1.2318 -0.3139 9 7 1.3875 -2.3504 0.4167 10 6 1.8655 -3.6326 -0.0130 11 6 1.2906 -4.1692 -1.3418 12 6 -0.2287 -3.8800 -1.4188 13 6 -0.8777 -4.0770 -0.0795 14 1 -0.2610 -4.7207 0.5477 15 7 -2.2138 -4.6553 -0.2437 16 6 -2.8004 -5.2990 0.7848 17 8 -2.2226 -5.3992 1.8464 18 6 -4.1749 -5.8935 0.6161 19 7 -4.5876 -6.5328 1.8680 20 6 -5.7109 -6.2892 2.5649 21 7 -5.7099 -7.0628 3.6200 22 6 -4.6077 -7.8114 3.6306 23 7 -3.8913 -7.5268 2.5749 24 6 -0.9775 -2.6831 0.5317 25 6 0.1892 -2.2872 1.3196 26 1 -0.4850 0.8400 -0.0040 27 1 2.9490 -3.5740 -0.1165 28 1 1.6431 -4.3579 0.7696 29 1 1.4570 -5.2449 -1.4010 30 1 1.7943 -3.6793 -2.1750 31 1 -0.6862 -4.5553 -2.1418 32 1 -0.3818 -2.8508 -1.7436 33 1 -2.6760 -4.5750 -1.0926 34 1 -4.8829 -5.1050 0.3605 35 1 -4.1543 -6.6359 -0.1818 36 1 -6.4798 -5.5784 2.3004 37 1 -4.3502 -8.5386 4.3863 38 1 -1.8571 -2.6488 1.1744 39 1 -1.1111 -1.9624 -0.2751 40 1 0.3202 -2.9727 2.1568 41 1 0.0587 -1.2707 1.6907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052916412.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:57 Heat of formation + Delta-G solvation = 94.254014 kcal Electronic energy + Delta-G solvation = -24061.472146 eV Core-core repulsion = 20593.844276 eV Total energy + Delta-G solvation = -3467.627871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11969 -39.76540 -37.72841 -34.68970 -34.06419 -32.58241 -31.26736 -31.06404 -30.53928 -28.17611 -26.05608 -23.98181 -23.14835 -22.32345 -22.04931 -20.43015 -20.05914 -19.21465 -17.50279 -17.19261 -16.67524 -15.93735 -15.59455 -14.90796 -14.88625 -14.86364 -14.20180 -13.97968 -13.80694 -13.64229 -13.37265 -13.00872 -12.72637 -12.07547 -11.93936 -11.80836 -11.45316 -11.25745 -10.84932 -10.76364 -10.42810 -10.24300 -10.21976 -10.09631 -10.02064 -9.83062 -9.81477 -9.57495 -9.42441 -9.29849 -8.72720 -8.37652 -6.74154 -5.81731 -3.19687 1.54471 2.09118 2.65321 2.92530 3.24958 3.35869 3.43913 3.47248 4.20981 4.31609 4.49498 4.63487 4.72593 4.79441 5.17563 5.30258 5.37569 5.56244 5.61762 5.70694 6.07103 6.10615 6.21457 6.26192 6.36371 6.44109 6.45142 6.59511 6.63742 6.82737 6.85296 6.89074 7.02009 7.08040 7.21013 7.54864 7.67692 7.71436 7.91459 8.00044 8.33733 8.40726 9.16934 9.85215 10.38654 11.25717 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.003614 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.587514 B = 7745.771681 C = 8134.992918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.153 3.847 11 C -0.140 4.140 12 C -0.112 4.112 13 C 0.148 3.852 14 H 0.084 0.916 15 N -0.716 5.716 16 C 0.495 3.505 17 O -0.510 6.510 18 C 0.109 3.891 19 N -0.367 5.367 20 C 0.253 3.747 21 N -0.547 5.547 22 C 0.189 3.811 23 N -0.288 5.288 24 C -0.130 4.130 25 C 0.168 3.832 26 H 0.252 0.748 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.395 0.605 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.218 0.782 37 H 0.215 0.785 38 H 0.028 0.972 39 H 0.102 0.898 40 H 0.009 0.991 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.149 -11.262 -2.450 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.024 3.976 11 C -0.181 4.181 12 C -0.150 4.150 13 C 0.045 3.955 14 H 0.102 0.898 15 N -0.368 5.368 16 C 0.278 3.722 17 O -0.383 6.383 18 C -0.018 4.018 19 N -0.158 5.158 20 C -0.044 4.044 21 N -0.274 5.274 22 C -0.114 4.114 23 N -0.114 5.114 24 C -0.170 4.170 25 C 0.045 3.955 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.228 0.772 34 H 0.147 0.853 35 H 0.134 0.866 36 H 0.235 0.765 37 H 0.232 0.768 38 H 0.046 0.954 39 H 0.120 0.880 40 H 0.027 0.973 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.336 -11.488 -1.619 15.538 hybrid contribution -0.036 1.209 -0.812 1.457 sum -10.373 -10.279 -2.430 14.804 Atomic orbital electron populations 1.69962 1.05116 1.25167 1.54481 1.24869 0.95223 0.98178 1.01359 0.86348 0.79301 0.83873 0.77556 1.21632 1.21669 1.20645 1.19216 0.93789 0.85575 1.39042 0.91506 1.44277 1.33902 1.00781 1.51960 1.20339 0.96559 0.88170 0.92524 1.22753 0.94879 0.98503 1.01999 1.21697 0.96128 1.02432 0.94742 1.20534 0.80614 0.96106 0.98279 0.89830 1.46209 1.19924 1.56466 1.14201 1.20274 0.87304 0.79508 0.85145 1.90811 1.64014 1.57303 1.26215 1.21644 0.97198 0.98872 0.84051 1.49969 1.16152 1.29658 1.19999 1.26052 0.90763 0.98793 0.88774 1.70513 1.24302 1.11431 1.21162 1.26000 0.88996 0.99575 0.96813 1.78203 1.18808 1.05848 1.08566 1.21323 0.98831 0.94414 1.02412 1.20090 0.84948 1.00615 0.89888 0.93831 0.94869 0.95316 0.93612 0.92575 0.94060 0.90016 0.77180 0.85308 0.86599 0.76527 0.76822 0.95366 0.87984 0.97304 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.24 9.44 55.49 0.52 -23.71 16 2 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.18 29.60 -169.99 -5.03 16.14 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.54 9.62 -15.06 -0.14 -6.68 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.28 2.61 -175.40 -0.46 -14.74 16 10 C 0.15 3.20 5.13 -4.93 -0.03 3.18 16 11 C -0.14 -2.51 6.40 -25.02 -0.16 -2.67 16 12 C -0.11 -1.92 5.30 -27.19 -0.14 -2.07 16 13 C 0.15 2.62 2.17 -69.60 -0.15 2.47 16 14 H 0.08 1.69 5.83 -51.93 -0.30 1.39 16 15 N -0.72 -9.68 5.01 -55.44 -0.28 -9.96 16 16 C 0.50 7.07 7.72 -10.99 -0.08 6.99 16 17 O -0.51 -10.07 15.48 5.56 0.09 -9.98 16 18 C 0.11 0.98 7.03 -5.19 -0.04 0.95 16 19 N -0.37 -4.40 3.40 -63.81 -0.22 -4.62 16 20 C 0.25 2.63 12.63 -90.66 -1.14 1.48 16 21 N -0.55 -7.00 11.19 -15.83 -0.18 -7.17 16 22 C 0.19 2.43 13.03 -91.81 -1.20 1.24 16 23 N -0.29 -4.26 11.84 29.29 0.35 -3.92 16 24 C -0.13 -2.75 4.74 -30.18 -0.14 -2.89 16 25 C 0.17 4.02 5.25 -5.20 -0.03 4.00 16 26 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 27 H 0.03 0.69 7.99 -51.93 -0.41 0.27 16 28 H 0.03 0.59 6.89 -51.93 -0.36 0.23 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.58 7.81 -51.93 -0.41 0.18 16 32 H 0.08 1.65 6.82 -51.93 -0.35 1.30 16 33 H 0.39 3.86 8.45 -40.82 -0.34 3.51 16 34 H 0.13 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.22 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.22 1.98 8.06 -52.49 -0.42 1.55 16 38 H 0.03 0.60 7.90 -51.93 -0.41 0.19 16 39 H 0.10 2.40 5.30 -51.93 -0.28 2.12 16 40 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 41 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -34.52 329.79 -9.26 -43.78 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.68 Total: 3.28 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -3.34 Total: 5.93 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.26 Total: -64.12 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.52 -9.26 -43.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052916412.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.037 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds