Wall clock time and date at job start Tue Mar 31 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36595 * 126.57861 * 2 1 4 4 C 1.47526 * 125.76901 * 0.04273 * 3 2 1 5 5 O 1.21591 * 119.99956 * 359.71367 * 4 3 2 6 6 N 1.34777 * 120.00018 * 179.71833 * 4 3 2 7 7 C 1.47018 * 125.64981 * 180.02562 * 6 4 3 8 8 C 1.54325 * 107.40412 * 178.82520 * 7 6 4 9 9 H 1.09000 * 110.72188 * 96.24097 * 8 7 6 10 10 C 1.52995 * 110.72304 * 219.52316 * 8 7 6 11 11 C 1.55405 * 102.82616 * 337.97548 * 8 7 6 12 12 H 1.09000 * 111.06973 * 153.48376 * 11 8 7 13 13 N 1.46495 * 110.89523 * 277.26785 * 11 8 7 14 14 C 1.36938 * 120.00233 * 198.69197 * 13 11 8 15 15 H 1.07997 * 119.99937 * 359.97438 * 14 13 11 16 16 C 1.38819 * 119.99806 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00215 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47315 * 89.99935 * 18 16 14 20 20 H 1.48497 * 109.47112 * 209.99722 * 18 16 14 21 21 H 1.48501 * 109.47184 * 329.99593 * 18 16 14 22 22 C 1.47426 * 125.64500 * 359.95367 * 6 4 3 23 23 N 1.34395 * 108.45998 * 179.77702 * 3 2 1 24 24 N 1.28767 * 109.52120 * 0.22890 * 23 3 2 25 25 N 1.34810 * 126.58174 * 180.17309 * 2 1 3 26 26 C 1.46499 * 126.59372 * 359.97438 * 25 2 1 27 27 H 1.08993 * 109.47548 * 89.99832 * 1 2 3 28 28 H 1.09003 * 109.47208 * 210.00072 * 1 2 3 29 29 H 1.09001 * 109.47345 * 329.99596 * 1 2 3 30 30 H 1.09002 * 109.88241 * 298.32048 * 7 6 4 31 31 H 1.09000 * 109.88049 * 59.33177 * 7 6 4 32 32 H 1.08999 * 109.47083 * 58.54334 * 10 8 7 33 33 H 1.09002 * 109.47293 * 178.54343 * 10 8 7 34 34 H 1.09000 * 109.47062 * 298.54438 * 10 8 7 35 35 H 0.97004 * 120.00040 * 18.68107 * 13 11 8 36 36 H 0.96993 * 119.99981 * 180.02562 * 17 16 14 37 37 H 1.08999 * 110.36956 * 323.01018 * 22 6 4 38 38 H 1.09001 * 110.36709 * 85.22211 * 22 6 4 39 39 H 1.08995 * 109.47709 * 270.24957 * 26 25 2 40 40 H 1.09000 * 109.47116 * 30.25213 * 26 25 2 41 41 H 1.09001 * 109.47312 * 150.24655 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7627 -0.0035 6 7 2.7816 3.4988 0.0065 7 6 2.4758 4.9368 0.0086 8 6 3.8198 5.6945 0.0455 9 1 4.1254 5.9869 -0.9590 10 6 3.7277 6.9159 0.9622 11 6 4.7963 4.6364 0.6303 12 1 5.8189 4.8233 0.3023 13 7 4.7149 4.6020 2.0926 14 6 5.7291 4.0410 2.8219 15 1 6.5888 3.6235 2.3190 16 6 5.6520 4.0089 4.2076 17 7 4.6045 4.5181 4.8204 18 14 7.0352 3.2430 5.2023 19 1 8.0435 4.2826 5.5304 20 1 6.4849 2.6734 6.4585 21 1 7.6767 2.1640 4.4090 22 6 4.2457 3.3267 0.0131 23 7 3.5983 0.6790 0.0050 24 7 3.6299 -0.6083 0.0032 25 7 2.3105 -1.0825 -0.0033 26 6 1.8864 -2.4848 -0.0070 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.9265 5.2003 -0.8952 31 1 1.8840 5.1887 0.8886 32 1 3.4521 6.5961 1.9671 33 1 4.6935 7.4203 0.9936 34 1 2.9720 7.6016 0.5790 35 1 3.9425 4.9767 2.5443 36 1 4.5508 4.4960 5.7886 37 1 4.5244 2.4710 0.6281 38 1 4.6173 3.1993 -1.0036 39 1 1.7773 -2.8342 1.0197 40 1 0.9314 -2.5742 -0.5246 41 1 2.6351 -3.0894 -0.5189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054522431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:27 Heat of formation + Delta-G solvation = 84.133131 kcal Electronic energy + Delta-G solvation = -24319.086215 eV Core-core repulsion = 20851.019470 eV Total energy + Delta-G solvation = -3468.066745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11698 -39.42448 -37.40170 -34.92092 -33.74106 -32.37124 -32.11977 -30.38015 -28.39289 -27.64629 -27.41999 -25.88360 -23.83783 -23.13492 -21.59639 -20.97330 -19.30393 -19.12475 -17.57359 -16.96950 -16.39919 -15.75564 -15.70272 -15.11432 -14.52491 -14.17780 -14.06054 -13.73842 -13.51152 -13.38382 -13.08447 -12.97286 -12.80986 -12.61645 -12.51486 -12.09311 -11.91699 -11.69137 -11.45203 -11.04137 -10.92129 -10.83424 -10.60103 -10.30692 -10.18236 -10.11003 -9.81515 -9.67898 -9.53814 -9.01110 -8.91524 -8.07904 -6.91400 -5.73336 -3.01628 1.21226 1.97897 2.08103 3.39568 3.46534 3.52259 3.53965 3.64784 4.28304 4.30614 4.62061 4.64614 4.77227 4.77546 5.02089 5.09663 5.29310 5.31220 5.38036 5.42435 5.63979 5.66572 5.73023 5.79483 5.90457 5.97050 6.02540 6.12073 6.31943 6.37311 6.44498 6.46599 6.49642 6.73300 6.76039 6.99014 7.06674 7.75743 7.96497 8.11912 8.45074 8.55191 9.56874 10.12848 10.47560 11.49206 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.005798 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.415156 B = 4828.401289 C = 6228.102849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.115 3.885 3 C -0.091 4.091 4 C 0.616 3.384 5 O -0.555 6.555 6 N -0.585 5.585 7 C 0.118 3.882 8 C -0.114 4.114 9 H 0.079 0.921 10 C -0.133 4.133 11 C 0.169 3.831 12 H 0.071 0.929 13 N -0.709 5.709 14 C -0.237 4.237 15 H 0.072 0.928 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.281 1.281 22 C 0.070 3.930 23 N -0.187 5.187 24 N -0.074 5.074 25 N -0.370 5.370 26 C 0.089 3.911 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.386 0.614 36 H 0.254 0.746 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 -8.763 -12.804 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C -0.230 4.230 4 C 0.403 3.597 5 O -0.434 6.434 6 N -0.315 5.315 7 C -0.004 4.004 8 C -0.133 4.133 9 H 0.098 0.902 10 C -0.191 4.191 11 C 0.057 3.943 12 H 0.088 0.912 13 N -0.350 5.350 14 C -0.368 4.368 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.580 5.580 18 Si 0.736 3.264 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.207 1.207 22 C -0.056 4.056 23 N -0.060 5.060 24 N -0.053 5.053 25 N -0.156 5.156 26 C -0.052 4.052 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.222 0.778 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.052 -9.198 -12.705 17.197 hybrid contribution -0.414 -0.475 0.834 1.046 sum -7.466 -9.674 -11.871 17.036 Atomic orbital electron populations 1.20668 0.84864 1.05328 1.04238 1.21832 0.96070 0.86405 0.97930 1.21139 0.88946 0.95284 1.17669 1.16279 0.84580 0.82025 0.76852 1.90705 1.15673 1.83551 1.53517 1.48047 1.07943 1.05599 1.69947 1.21967 0.97505 0.79553 1.01370 1.22541 0.94887 0.96169 0.99750 0.90223 1.21615 1.01305 0.95814 1.00323 1.21453 0.96264 0.90285 0.86323 0.91169 1.42388 1.23667 1.70451 0.98540 1.19240 0.98289 1.30618 0.88689 0.90994 1.24712 0.97818 1.01630 0.96545 1.69659 1.29243 1.50899 1.08220 0.86223 0.81515 0.78880 0.79820 1.21727 1.21963 1.20686 1.23608 0.78074 1.03708 1.00167 1.74766 1.18868 1.03419 1.08909 1.82021 0.95759 1.03993 1.23568 1.50257 1.06679 1.07503 1.51120 1.22092 1.02132 0.76450 1.04525 0.89365 0.90919 0.86937 0.92194 0.91288 0.90982 0.92275 0.93695 0.77802 0.93581 0.88025 0.92793 0.89473 0.88805 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.38 36.01 0.34 -0.62 16 2 C 0.12 1.65 7.02 -81.88 -0.57 1.07 16 3 C -0.09 -1.65 6.84 -83.55 -0.57 -2.22 16 4 C 0.62 12.02 7.85 -12.47 -0.10 11.92 16 5 O -0.56 -11.14 15.05 5.29 0.08 -11.06 16 6 N -0.59 -11.20 3.33 -171.76 -0.57 -11.77 16 7 C 0.12 2.04 6.45 -3.07 -0.02 2.02 16 8 C -0.11 -1.85 3.43 -88.65 -0.30 -2.15 16 9 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 10 C -0.13 -2.16 8.81 37.15 0.33 -1.83 16 11 C 0.17 3.32 3.45 -65.66 -0.23 3.10 16 12 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 13 N -0.71 -17.45 4.72 -51.23 -0.24 -17.69 16 14 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 18 Si 0.90 22.76 29.55 -169.99 -5.02 17.73 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.07 1.35 5.82 -2.54 -0.01 1.34 16 23 N -0.19 -3.56 9.39 32.85 0.31 -3.25 16 24 N -0.07 -1.26 13.78 60.35 0.83 -0.43 16 25 N -0.37 -4.81 4.03 -63.59 -0.26 -5.07 16 26 C 0.09 0.61 11.17 59.85 0.67 1.28 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 29 H 0.11 1.43 6.43 -51.93 -0.33 1.09 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.28 7.82 -51.93 -0.41 0.88 16 32 H 0.07 1.39 6.21 -51.93 -0.32 1.07 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.39 10.20 6.01 -40.82 -0.25 9.95 16 36 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.10 2.26 6.13 -51.93 -0.32 1.94 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.37 7.78 -51.93 -0.40 -0.04 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -34.52 337.56 -5.57 -40.09 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.79 Total: 7.14 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.72 Total: 6.81 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: 0.80 Total: -65.80 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.52 -5.57 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054522431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.219 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds