Wall clock time and date at job start Tue Mar 31 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36595 * 126.57861 * 2 1 4 4 C 1.47526 * 125.76901 * 0.04273 * 3 2 1 5 5 O 1.21591 * 119.99956 * 359.71367 * 4 3 2 6 6 N 1.34777 * 120.00018 * 179.71833 * 4 3 2 7 7 C 1.47018 * 125.64981 * 180.02562 * 6 4 3 8 8 C 1.54325 * 107.40412 * 178.82520 * 7 6 4 9 9 H 1.09000 * 110.72188 * 96.24097 * 8 7 6 10 10 C 1.52995 * 110.72304 * 219.52316 * 8 7 6 11 11 C 1.55405 * 102.82616 * 337.97548 * 8 7 6 12 12 H 1.09000 * 111.06973 * 153.48376 * 11 8 7 13 13 N 1.46495 * 110.89523 * 277.26785 * 11 8 7 14 14 C 1.36938 * 120.00233 * 198.69197 * 13 11 8 15 15 H 1.07997 * 119.99937 * 359.97438 * 14 13 11 16 16 C 1.38819 * 119.99806 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00215 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47315 * 89.99935 * 18 16 14 20 20 H 1.48497 * 109.47112 * 209.99722 * 18 16 14 21 21 H 1.48501 * 109.47184 * 329.99593 * 18 16 14 22 22 C 1.47426 * 125.64500 * 359.95367 * 6 4 3 23 23 N 1.34395 * 108.45998 * 179.77702 * 3 2 1 24 24 N 1.28767 * 109.52120 * 0.22890 * 23 3 2 25 25 N 1.34810 * 126.58174 * 180.17309 * 2 1 3 26 26 C 1.46499 * 126.59372 * 359.97438 * 25 2 1 27 27 H 1.08993 * 109.47548 * 89.99832 * 1 2 3 28 28 H 1.09003 * 109.47208 * 210.00072 * 1 2 3 29 29 H 1.09001 * 109.47345 * 329.99596 * 1 2 3 30 30 H 1.09002 * 109.88241 * 298.32048 * 7 6 4 31 31 H 1.09000 * 109.88049 * 59.33177 * 7 6 4 32 32 H 1.08999 * 109.47083 * 58.54334 * 10 8 7 33 33 H 1.09002 * 109.47293 * 178.54343 * 10 8 7 34 34 H 1.09000 * 109.47062 * 298.54438 * 10 8 7 35 35 H 0.97004 * 120.00040 * 18.68107 * 13 11 8 36 36 H 0.96993 * 119.99981 * 180.02562 * 17 16 14 37 37 H 1.08999 * 110.36956 * 323.01018 * 22 6 4 38 38 H 1.09001 * 110.36709 * 85.22211 * 22 6 4 39 39 H 1.08995 * 109.47709 * 270.24957 * 26 25 2 40 40 H 1.09000 * 109.47116 * 30.25213 * 26 25 2 41 41 H 1.09001 * 109.47312 * 150.24655 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0009 5 8 0.6859 2.7627 -0.0035 6 7 2.7816 3.4988 0.0065 7 6 2.4758 4.9368 0.0086 8 6 3.8198 5.6945 0.0455 9 1 4.1254 5.9869 -0.9590 10 6 3.7277 6.9159 0.9622 11 6 4.7963 4.6364 0.6303 12 1 5.8189 4.8233 0.3023 13 7 4.7149 4.6020 2.0926 14 6 5.7291 4.0410 2.8219 15 1 6.5888 3.6235 2.3190 16 6 5.6520 4.0089 4.2076 17 7 4.6045 4.5181 4.8204 18 14 7.0352 3.2430 5.2023 19 1 8.0435 4.2826 5.5304 20 1 6.4849 2.6734 6.4585 21 1 7.6767 2.1640 4.4090 22 6 4.2457 3.3267 0.0131 23 7 3.5983 0.6790 0.0050 24 7 3.6299 -0.6083 0.0032 25 7 2.3105 -1.0825 -0.0033 26 6 1.8864 -2.4848 -0.0070 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.9265 5.2003 -0.8952 31 1 1.8840 5.1887 0.8886 32 1 3.4521 6.5961 1.9671 33 1 4.6935 7.4203 0.9936 34 1 2.9720 7.6016 0.5790 35 1 3.9425 4.9767 2.5443 36 1 4.5508 4.4960 5.7886 37 1 4.5244 2.4710 0.6281 38 1 4.6173 3.1993 -1.0036 39 1 1.7773 -2.8342 1.0197 40 1 0.9314 -2.5742 -0.5246 41 1 2.6351 -3.0894 -0.5189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054522431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:26 Heat of formation + Delta-G solvation = 58.966389 kcal Electronic energy + Delta-G solvation = -24320.177527 eV Core-core repulsion = 20851.019470 eV Total energy + Delta-G solvation = -3469.158057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.28995 -40.88599 -38.91187 -36.00959 -35.57397 -33.87037 -33.25967 -32.21735 -29.51807 -29.24042 -28.31226 -27.18999 -25.81308 -24.54241 -23.01217 -22.05185 -20.65921 -20.61582 -19.40881 -18.40471 -17.57560 -17.24672 -16.94073 -16.44966 -16.33308 -15.70513 -15.38500 -15.23306 -14.67748 -14.48117 -14.25679 -14.21042 -13.96659 -13.92599 -13.56001 -13.40107 -13.32790 -13.08811 -12.90573 -12.82353 -12.73701 -12.27380 -12.16287 -12.13173 -11.81846 -11.46197 -11.30422 -11.16412 -11.09148 -10.90908 -10.24334 -9.59462 -8.92646 -7.91997 -5.18536 0.11032 0.62776 1.16289 1.45562 1.46873 1.54934 2.01311 2.24498 2.56835 3.16832 3.38122 3.40091 3.61432 3.64415 3.79203 3.94319 3.98829 4.13155 4.31857 4.35780 4.48095 4.58202 4.63635 4.64879 4.68232 4.72865 4.79409 4.81956 4.93260 5.01548 5.04304 5.10939 5.27573 5.31327 5.47863 5.54514 5.56583 5.63053 6.30285 6.49615 6.84569 7.13060 7.37251 8.13203 8.35898 9.31641 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012957 B = 0.005798 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.415156 B = 4828.401289 C = 6228.102849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.129 3.871 3 C -0.132 4.132 4 C 0.607 3.393 5 O -0.569 6.569 6 N -0.593 5.593 7 C 0.117 3.883 8 C -0.097 4.097 9 H 0.119 0.881 10 C -0.126 4.126 11 C 0.157 3.843 12 H 0.080 0.920 13 N -0.719 5.719 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.965 3.035 19 H -0.283 1.283 20 H -0.301 1.301 21 H -0.274 1.274 22 C 0.084 3.916 23 N -0.218 5.218 24 N -0.102 5.102 25 N -0.354 5.354 26 C 0.073 3.927 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.375 0.625 36 H 0.248 0.752 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -10.015 -14.618 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.011 4.011 3 C -0.272 4.272 4 C 0.395 3.605 5 O -0.450 6.450 6 N -0.323 5.323 7 C -0.005 4.005 8 C -0.117 4.117 9 H 0.137 0.863 10 C -0.184 4.184 11 C 0.047 3.953 12 H 0.098 0.902 13 N -0.359 5.359 14 C -0.361 4.361 15 H 0.095 0.905 16 C -0.267 4.267 17 N -0.621 5.621 18 Si 0.795 3.205 19 H -0.210 1.210 20 H -0.228 1.228 21 H -0.199 1.199 22 C -0.042 4.042 23 N -0.091 5.091 24 N -0.081 5.081 25 N -0.140 5.140 26 C -0.066 4.066 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.208 0.792 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.150 0.850 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.579 -10.483 -14.573 19.486 hybrid contribution -0.323 -0.198 1.304 1.358 sum -7.902 -10.681 -13.270 18.778 Atomic orbital electron populations 1.20805 0.81906 1.06056 1.05885 1.22354 0.97546 0.85634 0.95553 1.21281 0.89727 0.95646 1.20549 1.16610 0.84548 0.82835 0.76504 1.90675 1.15985 1.84027 1.54309 1.48177 1.07807 1.06336 1.70028 1.22069 0.98077 0.78887 1.01490 1.22535 0.93028 0.94828 1.01279 0.86316 1.21539 1.02219 0.96312 0.98353 1.21740 0.97860 0.91966 0.83765 0.90173 1.42521 1.22566 1.70147 1.00641 1.19608 0.98608 1.28813 0.89091 0.90536 1.25443 1.00131 1.03320 0.97787 1.69818 1.31281 1.53208 1.07819 0.85257 0.79047 0.78240 0.77986 1.21047 1.22840 1.19879 1.23348 0.78411 1.01835 1.00623 1.74718 1.19850 1.04437 1.10077 1.81875 0.98143 1.03445 1.24635 1.50624 1.05182 1.09355 1.48813 1.22715 1.04331 0.73120 1.06414 0.87023 0.86913 0.89369 0.89816 0.93462 0.94765 0.92169 0.90712 0.79170 0.94339 0.91143 0.90569 0.87834 0.84988 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.38 71.24 0.67 -0.93 16 2 C 0.13 3.50 7.02 41.72 0.29 3.79 16 3 C -0.13 -4.82 6.84 40.82 0.28 -4.54 16 4 C 0.61 23.99 7.85 86.69 0.68 24.67 16 5 O -0.57 -23.00 15.05 -4.00 -0.06 -23.06 16 6 N -0.59 -22.78 3.33 -815.58 -2.71 -25.49 16 7 C 0.12 3.94 6.45 86.73 0.56 4.50 16 8 C -0.10 -3.00 3.43 -9.52 -0.03 -3.03 16 9 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 10 C -0.13 -3.98 8.81 71.98 0.63 -3.35 16 11 C 0.16 6.11 3.45 46.47 0.16 6.27 16 12 H 0.08 2.97 8.13 -2.39 -0.02 2.95 16 13 N -0.72 -36.11 4.72 -316.00 -1.49 -37.60 16 14 C -0.23 -12.82 9.98 84.04 0.84 -11.98 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 17 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 18 Si 0.96 47.69 29.55 68.60 2.03 49.72 16 19 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 21 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 22 C 0.08 3.22 5.82 86.85 0.51 3.72 16 23 N -0.22 -8.48 9.39 -50.00 -0.47 -8.95 16 24 N -0.10 -3.45 13.78 37.02 0.51 -2.94 16 25 N -0.35 -8.57 4.03 -355.11 -1.43 -10.00 16 26 C 0.07 0.73 11.17 127.77 1.43 2.16 16 27 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.11 1.13 7.84 -2.39 -0.02 1.11 16 29 H 0.09 2.14 6.43 -2.39 -0.02 2.12 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 1.79 7.82 -2.39 -0.02 1.77 16 32 H 0.03 1.34 6.21 -2.39 -0.01 1.33 16 33 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.37 20.53 6.01 -92.71 -0.56 19.98 16 36 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.07 3.21 6.13 -2.39 -0.01 3.20 16 38 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.13 0.38 7.78 -2.39 -0.02 0.36 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -78.79 337.56 3.63 -75.16 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.49 Total: 26.35 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.48 Total: 17.36 kcal Atomic # 7 Polarization: -140.22 SS G_CDS: -5.31 Total: -145.53 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -78.79 3.63 -75.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054522431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.131 kcal (2) G-P(sol) polarization free energy of solvation -78.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds