Wall clock time and date at job start Tue Mar 31 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36601 * 126.58043 * 2 1 4 4 C 1.47518 * 125.76821 * 0.03768 * 3 2 1 5 5 O 1.21598 * 120.00156 * 359.71606 * 4 3 2 6 6 N 1.34776 * 120.00018 * 179.71843 * 4 3 2 7 7 C 1.47020 * 125.65207 * 180.02562 * 6 4 3 8 8 C 1.54322 * 107.27484 * 181.02149 * 7 6 4 9 9 H 1.09001 * 110.71904 * 263.83408 * 8 7 6 10 10 C 1.53003 * 110.72177 * 140.55640 * 8 7 6 11 11 C 1.55163 * 102.94125 * 22.19588 * 8 7 6 12 12 H 1.08995 * 111.03679 * 206.41029 * 11 8 7 13 13 N 1.46499 * 111.00385 * 82.57101 * 11 8 7 14 14 C 1.36931 * 120.00122 * 161.35093 * 13 11 8 15 15 H 1.08002 * 120.00098 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99535 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00187 * 180.27849 * 16 14 13 19 19 H 1.48501 * 109.46922 * 269.71949 * 18 16 14 20 20 H 1.48496 * 109.47354 * 29.72145 * 18 16 14 21 21 H 1.48501 * 109.47428 * 149.72253 * 18 16 14 22 22 C 1.47428 * 125.64736 * 359.97438 * 6 4 3 23 23 N 1.34405 * 108.45928 * 179.77700 * 3 2 1 24 24 N 1.28762 * 109.52205 * 0.22299 * 23 3 2 25 25 N 1.34819 * 126.58186 * 180.16926 * 2 1 3 26 26 C 1.46498 * 126.59458 * 359.96365 * 25 2 1 27 27 H 1.08993 * 109.47527 * 90.00387 * 1 2 3 28 28 H 1.09000 * 109.46794 * 210.00086 * 1 2 3 29 29 H 1.08998 * 109.47236 * 329.99504 * 1 2 3 30 30 H 1.08997 * 109.88236 * 300.44519 * 7 6 4 31 31 H 1.09001 * 109.87808 * 61.44955 * 7 6 4 32 32 H 1.09002 * 109.46882 * 306.48374 * 10 8 7 33 33 H 1.09004 * 109.46505 * 66.47772 * 10 8 7 34 34 H 1.08996 * 109.47329 * 186.47875 * 10 8 7 35 35 H 0.97001 * 119.99790 * 341.34610 * 13 11 8 36 36 H 0.97005 * 119.99717 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.36798 * 37.06769 * 22 6 4 38 38 H 1.08999 * 110.45853 * 274.79003 * 22 6 4 39 39 H 1.09003 * 109.46787 * 270.27549 * 26 25 2 40 40 H 1.08995 * 109.46825 * 30.27277 * 26 25 2 41 41 H 1.08994 * 109.47191 * 150.27667 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6859 2.7627 -0.0037 6 7 2.7816 3.4987 0.0064 7 6 2.4759 4.9368 0.0084 8 6 3.8219 5.6914 -0.0111 9 1 4.1185 5.9771 0.9982 10 6 3.7413 6.9188 -0.9211 11 6 4.8018 4.6391 -0.5941 12 1 5.8214 4.8245 -0.2563 13 7 4.7333 4.6117 -2.0573 14 6 5.7538 4.0541 -2.7802 15 1 6.6091 3.6341 -2.2718 16 6 5.6891 4.0286 -4.1666 17 7 4.6465 4.5400 -4.7862 18 14 7.0777 3.2609 -5.1524 19 1 8.0902 4.2990 -5.4725 20 1 7.7117 2.1800 -4.3557 21 1 6.5351 2.6935 -6.4129 22 6 4.2458 3.3267 0.0127 23 7 3.5984 0.6789 0.0050 24 7 3.6299 -0.6083 0.0033 25 7 2.3104 -1.0826 -0.0032 26 6 1.8864 -2.4849 -0.0066 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.8942 5.1934 -0.8769 31 1 1.9162 5.1955 0.9073 32 1 3.3882 6.6173 -1.9073 33 1 3.0487 7.6435 -0.4931 34 1 4.7295 7.3698 -1.0112 35 1 3.9649 4.9885 -2.5139 36 1 4.6011 4.5218 -5.7550 37 1 4.5302 2.4736 -0.6033 38 1 4.6096 3.1959 1.0318 39 1 1.7771 -2.8338 1.0203 40 1 0.9315 -2.5744 -0.5244 41 1 2.6352 -3.0896 -0.5180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054522435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:33 Heat of formation + Delta-G solvation = 83.569013 kcal Electronic energy + Delta-G solvation = -24318.430193 eV Core-core repulsion = 20850.338986 eV Total energy + Delta-G solvation = -3468.091207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11570 -39.42944 -37.40672 -34.92111 -33.73812 -32.37322 -32.12251 -30.37697 -28.39263 -27.64739 -27.42104 -25.88310 -23.83698 -23.13244 -21.59819 -20.97386 -19.30432 -19.12917 -17.56758 -16.97045 -16.39602 -15.76174 -15.70788 -15.10847 -14.52466 -14.16004 -14.06920 -13.71896 -13.55696 -13.35874 -13.07370 -12.97156 -12.80691 -12.67575 -12.48612 -12.08056 -11.91723 -11.69914 -11.43477 -11.04373 -10.92677 -10.83469 -10.60121 -10.31396 -10.18423 -10.11989 -9.80794 -9.68060 -9.54606 -9.01322 -8.90958 -8.07809 -6.91251 -5.73192 -3.01476 1.21166 1.97780 2.08138 3.39829 3.46520 3.52271 3.53996 3.64530 4.28764 4.31035 4.62116 4.64462 4.76262 4.76645 5.01929 5.09876 5.30293 5.30920 5.39392 5.42413 5.64150 5.66583 5.72836 5.79172 5.89857 5.96628 6.02162 6.12415 6.32747 6.36956 6.44304 6.47246 6.49596 6.73480 6.75901 6.97987 7.06194 7.75749 7.96505 8.11901 8.45163 8.55177 9.57017 10.13042 10.47873 11.49326 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.005794 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.633632 B = 4831.063419 C = 6231.383776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.115 3.885 3 C -0.091 4.091 4 C 0.616 3.384 5 O -0.555 6.555 6 N -0.585 5.585 7 C 0.119 3.881 8 C -0.114 4.114 9 H 0.080 0.920 10 C -0.131 4.131 11 C 0.169 3.831 12 H 0.070 0.930 13 N -0.709 5.709 14 C -0.237 4.237 15 H 0.072 0.928 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.281 1.281 21 H -0.293 1.293 22 C 0.070 3.930 23 N -0.187 5.187 24 N -0.074 5.074 25 N -0.370 5.370 26 C 0.090 3.910 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.386 0.614 36 H 0.254 0.746 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.130 -8.811 12.685 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C -0.230 4.230 4 C 0.403 3.597 5 O -0.435 6.435 6 N -0.315 5.315 7 C -0.004 4.004 8 C -0.134 4.134 9 H 0.098 0.902 10 C -0.189 4.189 11 C 0.057 3.943 12 H 0.088 0.912 13 N -0.350 5.350 14 C -0.368 4.368 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.580 5.580 18 Si 0.736 3.264 19 H -0.217 1.217 20 H -0.207 1.207 21 H -0.220 1.220 22 C -0.056 4.056 23 N -0.060 5.060 24 N -0.053 5.053 25 N -0.156 5.156 26 C -0.052 4.052 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.222 0.778 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.156 -9.248 12.586 17.180 hybrid contribution -0.410 -0.475 -0.849 1.056 sum -7.566 -9.723 11.737 17.016 Atomic orbital electron populations 1.20667 0.84867 1.05005 1.04564 1.21836 0.96068 0.86410 0.97908 1.21137 0.88940 0.95283 1.17686 1.16281 0.84584 0.82026 0.76849 1.90707 1.15676 1.83561 1.53515 1.48048 1.07935 1.05602 1.69948 1.21981 0.97458 0.79549 1.01398 1.22506 0.94871 0.96199 0.99786 0.90192 1.21600 1.01691 0.95667 0.99938 1.21418 0.96221 0.90303 0.86375 0.91174 1.42367 1.23665 1.70497 0.98479 1.19237 0.98230 1.30643 0.88710 0.91000 1.24713 0.97855 1.01621 0.96525 1.69667 1.29472 1.50895 1.07981 0.86224 0.81552 0.78892 0.79772 1.21732 1.20685 1.21963 1.23612 0.78080 1.03722 1.00182 1.74769 1.18857 1.03416 1.08912 1.82021 0.95763 1.03994 1.23562 1.50259 1.06672 1.07500 1.51147 1.22090 1.02340 0.76472 1.04280 0.89153 0.91005 0.87049 0.91283 0.92180 0.91256 0.93737 0.92114 0.77826 0.93591 0.88031 0.92794 0.89591 0.88776 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 9.38 36.00 0.34 -0.62 16 2 C 0.12 1.65 7.02 -81.88 -0.57 1.07 16 3 C -0.09 -1.65 6.84 -83.55 -0.57 -2.22 16 4 C 0.62 12.02 7.85 -12.48 -0.10 11.92 16 5 O -0.56 -11.14 15.05 5.28 0.08 -11.06 16 6 N -0.59 -11.20 3.33 -171.74 -0.57 -11.77 16 7 C 0.12 2.04 6.46 -3.07 -0.02 2.02 16 8 C -0.11 -1.85 3.42 -88.78 -0.30 -2.15 16 9 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 10 C -0.13 -2.13 8.71 37.16 0.32 -1.80 16 11 C 0.17 3.33 3.44 -65.77 -0.23 3.10 16 12 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 13 N -0.71 -17.45 4.74 -51.35 -0.24 -17.70 16 14 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 18 Si 0.90 22.76 29.55 -169.99 -5.02 17.74 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 C 0.07 1.35 5.82 -2.52 -0.01 1.33 16 23 N -0.19 -3.56 9.39 32.85 0.31 -3.25 16 24 N -0.07 -1.26 13.78 60.35 0.83 -0.43 16 25 N -0.37 -4.82 4.03 -63.59 -0.26 -5.07 16 26 C 0.09 0.61 11.17 59.85 0.67 1.28 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.48 7.84 -51.93 -0.41 0.07 16 29 H 0.11 1.33 6.43 -51.93 -0.33 1.00 16 30 H 0.07 1.29 7.76 -51.93 -0.40 0.88 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.32 6.35 -51.93 -0.33 0.99 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.39 10.21 6.08 -40.82 -0.25 9.96 16 36 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.10 2.25 6.14 -51.93 -0.32 1.94 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.41 7.78 -51.93 -0.40 0.01 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 337.63 15.07 5.09 5.09 Total: -1.00 -34.54 337.63 -5.58 -40.13 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.79 Total: 7.10 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.72 Total: 6.83 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: 0.79 Total: -65.81 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.54 -5.58 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054522435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.695 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds