Wall clock time and date at job start Tue Mar 31 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36601 * 126.58043 * 2 1 4 4 C 1.47518 * 125.76821 * 0.03768 * 3 2 1 5 5 O 1.21598 * 120.00156 * 359.71606 * 4 3 2 6 6 N 1.34776 * 120.00018 * 179.71843 * 4 3 2 7 7 C 1.47020 * 125.65207 * 180.02562 * 6 4 3 8 8 C 1.54322 * 107.27484 * 181.02149 * 7 6 4 9 9 H 1.09001 * 110.71904 * 263.83408 * 8 7 6 10 10 C 1.53003 * 110.72177 * 140.55640 * 8 7 6 11 11 C 1.55163 * 102.94125 * 22.19588 * 8 7 6 12 12 H 1.08995 * 111.03679 * 206.41029 * 11 8 7 13 13 N 1.46499 * 111.00385 * 82.57101 * 11 8 7 14 14 C 1.36931 * 120.00122 * 161.35093 * 13 11 8 15 15 H 1.08002 * 120.00098 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99535 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00187 * 180.27849 * 16 14 13 19 19 H 1.48501 * 109.46922 * 269.71949 * 18 16 14 20 20 H 1.48496 * 109.47354 * 29.72145 * 18 16 14 21 21 H 1.48501 * 109.47428 * 149.72253 * 18 16 14 22 22 C 1.47428 * 125.64736 * 359.97438 * 6 4 3 23 23 N 1.34405 * 108.45928 * 179.77700 * 3 2 1 24 24 N 1.28762 * 109.52205 * 0.22299 * 23 3 2 25 25 N 1.34819 * 126.58186 * 180.16926 * 2 1 3 26 26 C 1.46498 * 126.59458 * 359.96365 * 25 2 1 27 27 H 1.08993 * 109.47527 * 90.00387 * 1 2 3 28 28 H 1.09000 * 109.46794 * 210.00086 * 1 2 3 29 29 H 1.08998 * 109.47236 * 329.99504 * 1 2 3 30 30 H 1.08997 * 109.88236 * 300.44519 * 7 6 4 31 31 H 1.09001 * 109.87808 * 61.44955 * 7 6 4 32 32 H 1.09002 * 109.46882 * 306.48374 * 10 8 7 33 33 H 1.09004 * 109.46505 * 66.47772 * 10 8 7 34 34 H 1.08996 * 109.47329 * 186.47875 * 10 8 7 35 35 H 0.97001 * 119.99790 * 341.34610 * 13 11 8 36 36 H 0.97005 * 119.99717 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.36798 * 37.06769 * 22 6 4 38 38 H 1.08999 * 110.45853 * 274.79003 * 22 6 4 39 39 H 1.09003 * 109.46787 * 270.27549 * 26 25 2 40 40 H 1.08995 * 109.46825 * 30.27277 * 26 25 2 41 41 H 1.08994 * 109.47191 * 150.27667 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 0.0008 5 8 0.6859 2.7627 -0.0037 6 7 2.7816 3.4987 0.0064 7 6 2.4759 4.9368 0.0084 8 6 3.8219 5.6914 -0.0111 9 1 4.1185 5.9771 0.9982 10 6 3.7413 6.9188 -0.9211 11 6 4.8018 4.6391 -0.5941 12 1 5.8214 4.8245 -0.2563 13 7 4.7333 4.6117 -2.0573 14 6 5.7538 4.0541 -2.7802 15 1 6.6091 3.6341 -2.2718 16 6 5.6891 4.0286 -4.1666 17 7 4.6465 4.5400 -4.7862 18 14 7.0777 3.2609 -5.1524 19 1 8.0902 4.2990 -5.4725 20 1 7.7117 2.1800 -4.3557 21 1 6.5351 2.6935 -6.4129 22 6 4.2458 3.3267 0.0127 23 7 3.5984 0.6789 0.0050 24 7 3.6299 -0.6083 0.0033 25 7 2.3104 -1.0826 -0.0032 26 6 1.8864 -2.4849 -0.0066 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.8942 5.1934 -0.8769 31 1 1.9162 5.1955 0.9073 32 1 3.3882 6.6173 -1.9073 33 1 3.0487 7.6435 -0.4931 34 1 4.7295 7.3698 -1.0112 35 1 3.9649 4.9885 -2.5139 36 1 4.6011 4.5218 -5.7550 37 1 4.5302 2.4736 -0.6033 38 1 4.6096 3.1959 1.0318 39 1 1.7771 -2.8338 1.0203 40 1 0.9315 -2.5744 -0.5244 41 1 2.6352 -3.0896 -0.5180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054522435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:31 Heat of formation + Delta-G solvation = 58.388342 kcal Electronic energy + Delta-G solvation = -24319.522109 eV Core-core repulsion = 20850.338986 eV Total energy + Delta-G solvation = -3469.183123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -43.28917 -40.89158 -38.91691 -36.00949 -35.57322 -33.87358 -33.26092 -32.21528 -29.51684 -29.24423 -28.31283 -27.18923 -25.81230 -24.54094 -23.01515 -22.05231 -20.65965 -20.62079 -19.40256 -18.40593 -17.57190 -17.25909 -16.94234 -16.44270 -16.33154 -15.69105 -15.38255 -15.23666 -14.67492 -14.48098 -14.26928 -14.21378 -14.00389 -13.91682 -13.55656 -13.38683 -13.32163 -13.08661 -12.91895 -12.82294 -12.71854 -12.27024 -12.16290 -12.13839 -11.82445 -11.47136 -11.31240 -11.14672 -11.11187 -10.90256 -10.24447 -9.59310 -8.92631 -7.91913 -5.18453 0.10871 0.62648 1.16228 1.45569 1.46933 1.54988 2.01481 2.24123 2.56866 3.16828 3.38004 3.40121 3.61357 3.64404 3.79465 3.93805 3.98472 4.13644 4.32758 4.35650 4.48290 4.57820 4.63158 4.64785 4.68076 4.73128 4.79387 4.81889 4.93520 5.01290 5.04431 5.11041 5.27652 5.31247 5.47861 5.54298 5.56483 5.62163 6.30306 6.49560 6.84490 7.12955 7.37321 8.13270 8.36069 9.31714 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.005794 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.633632 B = 4831.063419 C = 6231.383776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.129 3.871 3 C -0.132 4.132 4 C 0.607 3.393 5 O -0.569 6.569 6 N -0.593 5.593 7 C 0.117 3.883 8 C -0.098 4.098 9 H 0.119 0.881 10 C -0.125 4.125 11 C 0.157 3.843 12 H 0.081 0.919 13 N -0.719 5.719 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.965 3.035 19 H -0.283 1.283 20 H -0.274 1.274 21 H -0.301 1.301 22 C 0.083 3.917 23 N -0.218 5.218 24 N -0.101 5.101 25 N -0.354 5.354 26 C 0.073 3.927 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.374 0.626 36 H 0.248 0.752 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 -10.072 14.447 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.011 4.011 3 C -0.272 4.272 4 C 0.395 3.605 5 O -0.450 6.450 6 N -0.323 5.323 7 C -0.005 4.005 8 C -0.117 4.117 9 H 0.137 0.863 10 C -0.182 4.182 11 C 0.047 3.953 12 H 0.098 0.902 13 N -0.358 5.358 14 C -0.361 4.361 15 H 0.095 0.905 16 C -0.267 4.267 17 N -0.621 5.621 18 Si 0.795 3.205 19 H -0.210 1.210 20 H -0.199 1.199 21 H -0.228 1.228 22 C -0.043 4.043 23 N -0.091 5.091 24 N -0.081 5.081 25 N -0.140 5.140 26 C -0.066 4.066 27 H 0.117 0.883 28 H 0.136 0.864 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.208 0.792 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.689 -10.544 14.406 19.437 hybrid contribution -0.316 -0.196 -1.299 1.351 sum -8.005 -10.740 13.107 18.741 Atomic orbital electron populations 1.20804 0.81919 1.06490 1.05449 1.22352 0.97534 0.85627 0.95573 1.21282 0.89727 0.95650 1.20543 1.16610 0.84553 0.82832 0.76497 1.90677 1.15991 1.84038 1.54314 1.48178 1.07799 1.06341 1.70025 1.22081 0.98055 0.78871 1.01497 1.22500 0.92993 0.94856 1.01345 0.86276 1.21524 1.02150 0.96314 0.98259 1.21705 0.97834 0.91976 0.83804 0.90169 1.42499 1.22555 1.70196 1.00589 1.19605 0.98556 1.28833 0.89106 0.90535 1.25442 1.00196 1.03302 0.97744 1.69826 1.31515 1.53206 1.07580 0.85256 0.79068 0.78249 0.77955 1.21047 1.19878 1.22846 1.23353 0.78401 1.01854 1.00647 1.74721 1.19835 1.04432 1.10094 1.81876 0.98135 1.03446 1.24629 1.50631 1.05188 1.09361 1.48800 1.22716 1.04018 0.73084 1.06768 0.88295 0.86360 0.88678 0.93464 0.89797 0.94868 0.90595 0.92370 0.79208 0.94348 0.91144 0.90568 0.86789 0.85517 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 9.38 71.23 0.67 -0.93 16 2 C 0.13 3.50 7.02 41.71 0.29 3.79 16 3 C -0.13 -4.82 6.84 40.82 0.28 -4.54 16 4 C 0.61 23.98 7.85 86.69 0.68 24.66 16 5 O -0.57 -23.00 15.05 -4.03 -0.06 -23.06 16 6 N -0.59 -22.77 3.33 -815.53 -2.71 -25.48 16 7 C 0.12 3.95 6.46 86.73 0.56 4.51 16 8 C -0.10 -3.00 3.42 -9.60 -0.03 -3.04 16 9 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 10 C -0.12 -3.93 8.71 71.98 0.63 -3.30 16 11 C 0.16 6.11 3.44 46.39 0.16 6.27 16 12 H 0.08 2.97 8.13 -2.39 -0.02 2.95 16 13 N -0.72 -36.09 4.74 -316.36 -1.50 -37.59 16 14 C -0.23 -12.80 9.98 84.03 0.84 -11.96 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 17 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 18 Si 0.96 47.68 29.55 68.60 2.03 49.71 16 19 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 20 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 22 C 0.08 3.20 5.82 86.86 0.51 3.70 16 23 N -0.22 -8.48 9.39 -49.99 -0.47 -8.95 16 24 N -0.10 -3.44 13.78 37.02 0.51 -2.93 16 25 N -0.35 -8.57 4.03 -355.11 -1.43 -10.00 16 26 C 0.07 0.73 11.17 127.77 1.43 2.16 16 27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.12 1.03 7.84 -2.39 -0.02 1.01 16 29 H 0.09 2.13 6.43 -2.39 -0.02 2.12 16 30 H 0.05 1.79 7.76 -2.39 -0.02 1.77 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.03 1.28 6.35 -2.39 -0.02 1.27 16 33 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.37 20.53 6.08 -92.71 -0.56 19.96 16 36 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 37 H 0.07 3.21 6.14 -2.39 -0.01 3.20 16 38 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 39 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.13 0.51 7.78 -2.39 -0.02 0.49 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -78.73 337.63 3.61 -75.12 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.49 Total: 26.32 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.47 Total: 17.40 kcal Atomic # 7 Polarization: -140.17 SS G_CDS: -5.32 Total: -145.50 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.06 Total: -23.06 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -78.73 3.61 -75.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054522435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.512 kcal (2) G-P(sol) polarization free energy of solvation -78.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds