Wall clock time and date at job start Tue Mar 31 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36589 * 126.58309 * 2 1 4 4 C 1.47528 * 125.76900 * 0.02671 * 3 2 1 5 5 O 1.21602 * 119.99495 * 359.72411 * 4 3 2 6 6 N 1.34778 * 119.99988 * 179.71730 * 4 3 2 7 7 C 1.47019 * 125.64867 * 0.04830 * 6 4 3 8 8 C 1.54319 * 107.27192 * 181.02155 * 7 6 4 9 9 H 1.09001 * 110.87221 * 263.76236 * 8 7 6 10 10 N 1.46499 * 110.72186 * 140.55210 * 8 7 6 11 11 C 1.36932 * 119.99549 * 91.47934 * 10 8 7 12 12 H 1.08003 * 120.00354 * 0.02562 * 11 10 8 13 13 C 1.38817 * 120.00011 * 179.97438 * 11 10 8 14 14 N 1.31619 * 120.00154 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99635 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99668 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99848 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99841 * 15 13 11 19 19 C 1.55161 * 102.94260 * 22.19190 * 8 7 6 20 20 H 1.09001 * 111.00676 * 82.57089 * 19 8 7 21 21 C 1.52997 * 111.00650 * 206.38945 * 19 8 7 22 22 C 1.47423 * 125.64446 * 179.97438 * 6 4 3 23 23 N 1.34396 * 108.46294 * 179.76853 * 3 2 1 24 24 N 1.28764 * 109.51953 * 0.22762 * 23 3 2 25 25 N 1.34813 * 126.57724 * 180.15598 * 2 1 3 26 26 C 1.46501 * 126.59871 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.46441 * 90.00670 * 1 2 3 28 28 H 1.08998 * 109.47368 * 209.99959 * 1 2 3 29 29 H 1.08993 * 109.47273 * 330.00666 * 1 2 3 30 30 H 1.08999 * 109.88441 * 61.60343 * 7 6 4 31 31 H 1.09004 * 109.88223 * 300.43761 * 7 6 4 32 32 H 0.96993 * 120.00302 * 271.47898 * 10 8 7 33 33 H 0.96998 * 119.99442 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47131 * 59.99601 * 21 19 8 35 35 H 1.08999 * 109.47575 * 180.02562 * 21 19 8 36 36 H 1.09006 * 109.47159 * 299.99956 * 21 19 8 37 37 H 1.08996 * 110.36580 * 37.07724 * 22 6 4 38 38 H 1.08997 * 110.36857 * 274.75021 * 22 6 4 39 39 H 1.09005 * 109.46894 * 270.27197 * 26 25 2 40 40 H 1.09005 * 109.46959 * 30.27051 * 26 25 2 41 41 H 1.09003 * 109.47433 * 150.27297 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5027 0.0006 5 8 0.6859 2.7627 -0.0040 6 7 2.7818 3.4987 0.0063 7 6 4.2419 3.3271 0.0113 8 6 4.8688 4.7368 0.0432 9 1 5.1336 5.0669 -0.9614 10 7 6.0412 4.7630 0.9213 11 6 7.2867 4.5172 0.4079 12 1 7.4047 4.3045 -0.6444 13 6 8.3977 4.5426 1.2398 14 7 9.5949 4.3069 0.7463 15 14 8.1935 4.9112 3.0596 16 1 8.3020 6.3753 3.2834 17 1 9.2552 4.2131 3.8282 18 1 6.8612 4.4383 3.5141 19 6 3.7273 5.6117 0.6254 20 1 3.7056 5.5522 1.7136 21 6 3.8578 7.0636 0.1610 22 6 2.4752 4.9407 0.0069 23 7 3.5984 0.6788 0.0051 24 7 3.6298 -0.6084 0.0035 25 7 2.3104 -1.0826 -0.0029 26 6 1.8864 -2.4849 -0.0062 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 4.5566 2.8018 -0.8905 31 1 4.5462 2.7660 0.8949 32 1 5.9353 4.9544 1.8662 33 1 10.3712 4.3249 1.3276 34 1 3.8080 7.1029 -0.9271 35 1 3.0455 7.6548 0.5839 36 1 4.8132 7.4677 0.4958 37 1 1.5960 5.1413 0.6192 38 1 2.3183 5.2957 -1.0116 39 1 1.7769 -2.8338 1.0207 40 1 0.9314 -2.5745 -0.5242 41 1 2.6352 -3.0898 -0.5176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054522439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:37 Heat of formation + Delta-G solvation = 82.886331 kcal Electronic energy + Delta-G solvation = -23906.911403 eV Core-core repulsion = 20438.790592 eV Total energy + Delta-G solvation = -3468.120810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.26069 -39.60169 -37.55351 -35.04936 -34.09302 -32.55542 -32.27441 -30.95787 -28.54871 -27.82223 -27.56739 -26.11259 -23.90835 -22.95003 -21.33242 -20.99449 -20.08240 -19.42846 -17.51768 -17.39662 -16.55165 -16.03105 -15.87715 -15.28976 -14.63178 -14.29278 -14.17275 -13.75239 -13.65169 -13.33218 -13.22101 -13.14951 -13.09395 -12.77323 -12.53883 -12.41724 -12.26007 -11.82970 -11.61143 -11.36451 -11.14896 -10.98170 -10.64459 -10.57207 -10.31821 -10.26885 -9.98212 -9.86888 -9.56211 -9.16759 -8.93096 -8.28957 -7.30123 -5.75689 -3.12504 1.06710 1.81612 1.95503 3.17721 3.39598 3.41057 3.42579 3.47580 4.14197 4.18417 4.47352 4.58995 4.60685 4.67580 4.89706 4.95325 5.11135 5.14168 5.18085 5.24205 5.50376 5.51683 5.59987 5.63805 5.73788 5.81327 5.84508 5.88838 5.94551 6.19235 6.21785 6.30616 6.42176 6.55694 6.58873 6.64173 6.90401 7.73419 7.96295 8.00409 8.32305 8.43090 9.19957 9.92182 10.10556 11.42333 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.004801 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.837532 B = 5830.620955 C = 7150.507422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.116 3.884 3 C -0.100 4.100 4 C 0.616 3.384 5 O -0.554 6.554 6 N -0.598 5.598 7 C 0.083 3.917 8 C 0.180 3.820 9 H 0.077 0.923 10 N -0.734 5.734 11 C -0.246 4.246 12 H 0.093 0.907 13 C 0.009 3.991 14 N -0.931 5.931 15 Si 0.882 3.118 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.277 1.277 19 C -0.120 4.120 20 H 0.081 0.919 21 C -0.134 4.134 22 C 0.116 3.884 23 N -0.185 5.185 24 N -0.068 5.068 25 N -0.370 5.370 26 C 0.089 3.911 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 -8.681 -1.624 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 C -0.239 4.239 4 C 0.403 3.597 5 O -0.433 6.433 6 N -0.330 5.330 7 C -0.043 4.043 8 C 0.069 3.931 9 H 0.095 0.905 10 N -0.376 5.376 11 C -0.376 4.376 12 H 0.110 0.890 13 C -0.187 4.187 14 N -0.578 5.578 15 Si 0.712 3.288 16 H -0.210 1.210 17 H -0.218 1.218 18 H -0.203 1.203 19 C -0.140 4.140 20 H 0.099 0.901 21 C -0.191 4.191 22 C -0.006 4.006 23 N -0.058 5.058 24 N -0.047 5.047 25 N -0.155 5.155 26 C -0.053 4.053 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.197 0.803 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.752 -9.089 -1.772 21.815 hybrid contribution -0.808 -0.009 1.367 1.588 sum -20.560 -9.098 -0.405 22.487 Atomic orbital electron populations 1.20671 0.84818 1.05196 1.04427 1.21852 0.96069 0.86447 0.97807 1.21150 0.89094 0.95232 1.18469 1.16337 0.84575 0.82084 0.76731 1.90716 1.15576 1.83587 1.53393 1.48282 1.08247 1.05909 1.70522 1.23317 0.76509 1.01375 1.03068 1.21282 0.86091 0.90396 0.95378 0.90494 1.42691 1.02912 1.85290 1.06662 1.19085 0.81968 1.40787 0.95769 0.88952 1.24645 0.95169 1.01497 0.97358 1.69699 0.97702 1.55692 1.34717 0.86598 0.77085 0.78082 0.87050 1.21027 1.21752 1.20315 1.22716 0.94780 0.95798 1.00676 0.90088 1.21616 1.02121 0.94325 1.01086 1.22296 0.98204 0.79190 1.00937 1.74885 1.18651 1.03562 1.08683 1.82109 0.95544 1.03849 1.23245 1.50340 1.06719 1.07591 1.50873 1.22119 1.02283 0.76362 1.04516 0.89228 0.90881 0.87047 0.91240 0.90297 0.80348 0.93032 0.92513 0.93128 0.91377 0.90697 0.91198 0.89451 0.88744 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 9.38 36.01 0.34 -0.44 16 2 C 0.12 1.45 7.02 -81.88 -0.57 0.87 16 3 C -0.10 -1.62 6.85 -83.55 -0.57 -2.20 16 4 C 0.62 10.47 7.85 -12.47 -0.10 10.37 16 5 O -0.55 -9.59 14.98 5.28 0.08 -9.51 16 6 N -0.60 -10.12 3.33 -171.74 -0.57 -10.70 16 7 C 0.08 1.56 5.27 -3.07 -0.02 1.54 16 8 C 0.18 3.42 3.08 -66.10 -0.20 3.21 16 9 H 0.08 1.48 7.99 -51.93 -0.41 1.07 16 10 N -0.73 -17.00 4.95 -51.65 -0.26 -17.25 16 11 C -0.25 -6.83 10.44 -15.06 -0.16 -6.98 16 12 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 13 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 14 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 15 Si 0.88 22.08 27.73 -169.99 -4.71 17.37 16 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 18 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 19 C -0.12 -1.84 3.27 -88.45 -0.29 -2.13 16 20 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 21 C -0.13 -1.79 9.31 37.16 0.35 -1.45 16 22 C 0.12 1.70 6.38 -2.51 -0.02 1.68 16 23 N -0.18 -3.33 9.78 32.85 0.32 -3.00 16 24 N -0.07 -1.10 13.78 60.35 0.83 -0.27 16 25 N -0.37 -4.32 4.03 -63.58 -0.26 -4.58 16 26 C 0.09 0.50 11.17 59.85 0.67 1.17 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.39 7.84 -51.93 -0.41 -0.02 16 29 H 0.11 1.14 6.43 -51.93 -0.33 0.81 16 30 H 0.07 1.37 7.73 -51.93 -0.40 0.96 16 31 H 0.08 1.66 7.50 -51.93 -0.39 1.27 16 32 H 0.36 8.34 5.62 -40.82 -0.23 8.11 16 33 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.04 8.04 -51.93 -0.42 0.63 16 38 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.27 7.78 -51.93 -0.40 -0.13 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -34.86 338.87 -5.31 -40.16 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.95 Total: 5.20 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.67 Total: 5.83 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.84 Total: -64.16 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.86 -5.31 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054522439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.049 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds