Wall clock time and date at job start Tue Mar 31 2020 03:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36589 * 126.58309 * 2 1 4 4 C 1.47528 * 125.76900 * 0.02671 * 3 2 1 5 5 O 1.21602 * 119.99495 * 359.72411 * 4 3 2 6 6 N 1.34778 * 119.99988 * 179.71730 * 4 3 2 7 7 C 1.47019 * 125.64867 * 0.04830 * 6 4 3 8 8 C 1.54319 * 107.27192 * 181.02155 * 7 6 4 9 9 H 1.09001 * 110.87221 * 263.76236 * 8 7 6 10 10 N 1.46499 * 110.72186 * 140.55210 * 8 7 6 11 11 C 1.36932 * 119.99549 * 91.47934 * 10 8 7 12 12 H 1.08003 * 120.00354 * 0.02562 * 11 10 8 13 13 C 1.38817 * 120.00011 * 179.97438 * 11 10 8 14 14 N 1.31619 * 120.00154 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99635 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99668 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99848 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99841 * 15 13 11 19 19 C 1.55161 * 102.94260 * 22.19190 * 8 7 6 20 20 H 1.09001 * 111.00676 * 82.57089 * 19 8 7 21 21 C 1.52997 * 111.00650 * 206.38945 * 19 8 7 22 22 C 1.47423 * 125.64446 * 179.97438 * 6 4 3 23 23 N 1.34396 * 108.46294 * 179.76853 * 3 2 1 24 24 N 1.28764 * 109.51953 * 0.22762 * 23 3 2 25 25 N 1.34813 * 126.57724 * 180.15598 * 2 1 3 26 26 C 1.46501 * 126.59871 * 359.97438 * 25 2 1 27 27 H 1.09003 * 109.46441 * 90.00670 * 1 2 3 28 28 H 1.08998 * 109.47368 * 209.99959 * 1 2 3 29 29 H 1.08993 * 109.47273 * 330.00666 * 1 2 3 30 30 H 1.08999 * 109.88441 * 61.60343 * 7 6 4 31 31 H 1.09004 * 109.88223 * 300.43761 * 7 6 4 32 32 H 0.96993 * 120.00302 * 271.47898 * 10 8 7 33 33 H 0.96998 * 119.99442 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47131 * 59.99601 * 21 19 8 35 35 H 1.08999 * 109.47575 * 180.02562 * 21 19 8 36 36 H 1.09006 * 109.47159 * 299.99956 * 21 19 8 37 37 H 1.08996 * 110.36580 * 37.07724 * 22 6 4 38 38 H 1.08997 * 110.36857 * 274.75021 * 22 6 4 39 39 H 1.09005 * 109.46894 * 270.27197 * 26 25 2 40 40 H 1.09005 * 109.46959 * 30.27051 * 26 25 2 41 41 H 1.09003 * 109.47433 * 150.27297 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5027 0.0006 5 8 0.6859 2.7627 -0.0040 6 7 2.7818 3.4987 0.0063 7 6 4.2419 3.3271 0.0113 8 6 4.8688 4.7368 0.0432 9 1 5.1336 5.0669 -0.9614 10 7 6.0412 4.7630 0.9213 11 6 7.2867 4.5172 0.4079 12 1 7.4047 4.3045 -0.6444 13 6 8.3977 4.5426 1.2398 14 7 9.5949 4.3069 0.7463 15 14 8.1935 4.9112 3.0596 16 1 8.3020 6.3753 3.2834 17 1 9.2552 4.2131 3.8282 18 1 6.8612 4.4383 3.5141 19 6 3.7273 5.6117 0.6254 20 1 3.7056 5.5522 1.7136 21 6 3.8578 7.0636 0.1610 22 6 2.4752 4.9407 0.0069 23 7 3.5984 0.6788 0.0051 24 7 3.6298 -0.6084 0.0035 25 7 2.3104 -1.0826 -0.0029 26 6 1.8864 -2.4849 -0.0062 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 4.5566 2.8018 -0.8905 31 1 4.5462 2.7660 0.8949 32 1 5.9353 4.9544 1.8662 33 1 10.3712 4.3249 1.3276 34 1 3.8080 7.1029 -0.9271 35 1 3.0455 7.6548 0.5839 36 1 4.8132 7.4677 0.4958 37 1 1.5960 5.1413 0.6192 38 1 2.3183 5.2957 -1.0116 39 1 1.7769 -2.8338 1.0207 40 1 0.9314 -2.5745 -0.5242 41 1 2.6352 -3.0898 -0.5176 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054522439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:35 Heat of formation + Delta-G solvation = 56.826407 kcal Electronic energy + Delta-G solvation = -23908.041446 eV Core-core repulsion = 20438.790592 eV Total energy + Delta-G solvation = -3469.250854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -43.32202 -40.93899 -38.94927 -36.11501 -35.80061 -33.95961 -33.32117 -32.81354 -29.57642 -29.35188 -28.31872 -27.22936 -25.69002 -24.31992 -22.69621 -22.08152 -21.54524 -20.65813 -19.51976 -18.59258 -17.62754 -17.22803 -17.12308 -16.55172 -16.28173 -15.75316 -15.25704 -15.10974 -14.86500 -14.60962 -14.29724 -14.25933 -14.14961 -13.95707 -13.74472 -13.57875 -13.34158 -13.16453 -12.93236 -12.88566 -12.85915 -12.27770 -12.16764 -12.00472 -11.91153 -11.79784 -11.44238 -11.18134 -11.14628 -10.93970 -10.27602 -9.64710 -9.34821 -8.00567 -5.35107 0.09301 0.58173 1.15027 1.38592 1.41808 1.48143 1.91997 2.15756 2.49429 3.08924 3.27983 3.34014 3.53985 3.62214 3.65579 3.75248 3.87965 4.13490 4.30236 4.31858 4.38053 4.45503 4.58315 4.64497 4.65346 4.65664 4.71302 4.81575 4.92071 4.99113 5.05371 5.11430 5.17453 5.25324 5.32986 5.51241 5.53691 5.78680 6.22947 6.38005 6.80770 7.06364 7.08600 7.81649 8.01021 9.20855 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015719 B = 0.004801 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.837532 B = 5830.620955 C = 7150.507422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.134 3.866 3 C -0.138 4.138 4 C 0.614 3.386 5 O -0.557 6.557 6 N -0.603 5.603 7 C 0.104 3.896 8 C 0.172 3.828 9 H 0.071 0.929 10 N -0.736 5.736 11 C -0.229 4.229 12 H 0.059 0.941 13 C -0.058 4.058 14 N -0.982 5.982 15 Si 0.951 3.049 16 H -0.272 1.272 17 H -0.299 1.299 18 H -0.258 1.258 19 C -0.106 4.106 20 H 0.081 0.919 21 C -0.129 4.129 22 C 0.118 3.882 23 N -0.226 5.226 24 N -0.105 5.105 25 N -0.354 5.354 26 C 0.072 3.928 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.367 0.633 33 H 0.257 0.743 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.404 -9.079 -0.709 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.006 4.006 3 C -0.278 4.278 4 C 0.402 3.598 5 O -0.437 6.437 6 N -0.335 5.335 7 C -0.022 4.022 8 C 0.062 3.938 9 H 0.089 0.911 10 N -0.377 5.377 11 C -0.360 4.360 12 H 0.077 0.923 13 C -0.250 4.250 14 N -0.632 5.632 15 Si 0.778 3.222 16 H -0.198 1.198 17 H -0.226 1.226 18 H -0.182 1.182 19 C -0.126 4.126 20 H 0.099 0.901 21 C -0.187 4.187 22 C -0.003 4.003 23 N -0.098 5.098 24 N -0.084 5.084 25 N -0.140 5.140 26 C -0.066 4.066 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.151 0.849 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.393 -9.506 -0.867 25.266 hybrid contribution 0.159 -0.038 0.970 0.983 sum -23.235 -9.544 0.103 25.119 Atomic orbital electron populations 1.20839 0.81521 1.06413 1.05879 1.22426 0.97608 0.85443 0.95166 1.21378 0.89507 0.95952 1.20965 1.16503 0.84491 0.82491 0.76286 1.90700 1.15403 1.83857 1.53745 1.48293 1.07137 1.07092 1.70957 1.22791 0.78103 1.00307 1.01005 1.21464 0.86000 0.91490 0.94835 0.91053 1.42613 1.02531 1.85304 1.07289 1.19021 0.83913 1.38672 0.94386 0.92264 1.25422 0.94767 1.02470 1.02293 1.69879 0.98686 1.58194 1.36467 0.85481 0.77508 0.78251 0.80948 1.19807 1.22598 1.18244 1.22636 0.92998 0.96433 1.00543 0.90082 1.21597 1.02347 0.92905 1.01828 1.22431 0.98074 0.77702 1.02120 1.74841 1.20222 1.04640 1.10085 1.81970 0.98224 1.03391 1.24838 1.50703 1.05196 1.09512 1.48545 1.22726 1.04191 0.73109 1.06609 0.87373 0.86793 0.88622 0.93062 0.92796 0.79935 0.93382 0.91647 0.90196 0.93059 0.89215 0.89616 0.87346 0.84948 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.18 9.38 71.24 0.67 -0.51 16 2 C 0.13 3.09 7.02 41.72 0.29 3.38 16 3 C -0.14 -4.46 6.85 40.82 0.28 -4.18 16 4 C 0.61 20.57 7.85 86.69 0.68 21.25 16 5 O -0.56 -18.45 14.98 -4.04 -0.06 -18.51 16 6 N -0.60 -20.21 3.33 -815.50 -2.71 -22.92 16 7 C 0.10 4.04 5.27 86.73 0.46 4.49 16 8 C 0.17 6.58 3.08 46.18 0.14 6.72 16 9 H 0.07 2.81 7.99 -2.39 -0.02 2.79 16 10 N -0.74 -34.36 4.95 -317.33 -1.57 -35.94 16 11 C -0.23 -13.10 10.44 84.04 0.88 -12.22 16 12 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 13 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 14 N -0.98 -63.68 13.97 21.65 0.30 -63.38 16 15 Si 0.95 46.17 27.73 68.60 1.90 48.08 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 18 H -0.26 -11.52 6.52 99.48 0.65 -10.88 16 19 C -0.11 -3.09 3.27 -9.39 -0.03 -3.12 16 20 H 0.08 2.40 8.01 -2.39 -0.02 2.38 16 21 C -0.13 -3.16 9.31 71.98 0.67 -2.49 16 22 C 0.12 3.23 6.38 86.87 0.55 3.78 16 23 N -0.23 -8.42 9.78 -50.00 -0.49 -8.90 16 24 N -0.10 -3.45 13.78 37.02 0.51 -2.94 16 25 N -0.35 -7.68 4.03 -355.08 -1.43 -9.11 16 26 C 0.07 0.58 11.17 127.77 1.43 2.00 16 27 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.11 0.60 7.84 -2.39 -0.02 0.59 16 29 H 0.10 1.69 6.43 -2.39 -0.02 1.68 16 30 H 0.05 2.14 7.73 -2.39 -0.02 2.12 16 31 H 0.05 2.36 7.50 -2.39 -0.02 2.34 16 32 H 0.37 16.57 5.62 -92.71 -0.52 16.05 16 33 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 34 H 0.06 1.48 8.07 -2.39 -0.02 1.46 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.09 2.24 8.04 -2.39 -0.02 2.22 16 38 H 0.09 2.09 7.99 -2.39 -0.02 2.07 16 39 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 40 H 0.13 0.10 7.78 -2.38 -0.02 0.08 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -79.97 338.87 3.40 -76.57 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.47 Total: 20.92 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 6.49 Total: 16.14 kcal Atomic # 7 Polarization: -137.80 SS G_CDS: -5.39 Total: -143.19 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.06 Total: -18.51 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.90 Total: 48.08 kcal Total: -79.97 3.40 -76.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054522439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.395 kcal (2) G-P(sol) polarization free energy of solvation -79.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds