Wall clock time and date at job start Tue Mar 31 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.95883 * 2 1 4 4 C 1.33246 * 109.82627 * 180.23770 * 3 2 1 5 5 C 1.50698 * 125.52316 * 179.73039 * 4 3 2 6 6 C 1.50702 * 109.47384 * 270.01342 * 5 4 3 7 7 O 1.21286 * 119.99598 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00353 * 180.02562 * 6 5 4 9 9 C 1.47024 * 125.65055 * 179.71948 * 8 6 5 10 10 C 1.54328 * 107.26669 * 178.84677 * 9 8 6 11 11 H 1.09008 * 110.51228 * 96.45214 * 10 9 8 12 12 C 1.52999 * 110.84952 * 219.66917 * 10 9 8 13 13 C 1.55157 * 103.02215 * 338.14023 * 10 9 8 14 14 H 1.08998 * 111.03668 * 277.21847 * 13 10 9 15 15 N 1.46503 * 111.00312 * 153.37744 * 13 10 9 16 16 C 1.36939 * 119.99570 * 161.34948 * 15 13 10 17 17 H 1.07995 * 120.00539 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99945 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00300 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99811 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47204 * 89.99951 * 20 18 16 22 22 H 1.48502 * 109.47237 * 210.00193 * 20 18 16 23 23 H 1.48500 * 109.47157 * 330.00031 * 20 18 16 24 24 C 1.47423 * 125.64860 * 0.02562 * 8 6 5 25 25 N 1.30709 * 108.94800 * 359.76504 * 4 3 2 26 26 N 1.34429 * 125.96217 * 179.83158 * 2 1 3 27 27 H 0.97001 * 126.82629 * 0.04437 * 26 2 1 28 28 H 1.08998 * 109.47274 * 270.16602 * 1 2 3 29 29 H 1.08997 * 109.47016 * 30.17085 * 1 2 3 30 30 H 1.09003 * 109.46808 * 150.16938 * 1 2 3 31 31 H 1.09001 * 109.47705 * 30.01842 * 5 4 3 32 32 H 1.09007 * 109.46998 * 150.01972 * 5 4 3 33 33 H 1.09004 * 109.87906 * 298.39702 * 9 8 6 34 34 H 1.09005 * 109.87736 * 59.55681 * 9 8 6 35 35 H 1.09005 * 109.47167 * 173.69280 * 12 10 9 36 36 H 1.08991 * 109.47472 * 293.69197 * 12 10 9 37 37 H 1.08998 * 109.47076 * 53.70028 * 12 10 9 38 38 H 0.96998 * 120.00528 * 341.35561 * 15 13 10 39 39 H 0.97001 * 120.00036 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.36433 * 322.93315 * 24 8 6 41 41 H 1.08997 * 110.36816 * 85.14387 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0052 5 6 4.7371 1.6237 -0.0127 6 6 5.1243 1.9327 -1.4359 7 8 4.5014 1.4423 -2.3539 8 7 6.1627 2.7538 -1.6888 9 6 6.6494 3.1339 -3.0230 10 6 7.8298 4.1072 -2.8199 11 1 8.7786 3.5730 -2.8716 12 6 7.7867 5.2378 -3.8498 13 6 7.5869 4.6577 -1.3898 14 1 6.8668 5.4759 -1.4025 15 7 8.8451 5.0787 -0.7685 16 6 8.8276 5.9270 0.3063 17 1 7.8864 6.2855 0.6962 18 6 10.0197 6.3264 0.8947 19 7 10.0031 7.1422 1.9274 20 14 11.6478 5.7071 0.2200 21 1 12.1384 6.6417 -0.8245 22 1 12.6419 5.6284 1.3203 23 1 11.4573 4.3587 -0.3723 24 6 7.0025 3.4148 -0.6733 25 7 3.6195 -0.6167 -0.0035 26 7 2.2964 -1.0881 0.0032 27 1 2.0094 -2.0146 0.0053 28 1 -0.3634 0.0030 1.0276 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 4.4726 2.5481 0.5008 32 1 5.5768 1.1520 0.4980 33 1 6.9855 2.2476 -3.5613 34 1 5.8544 3.6294 -3.5803 35 1 8.5604 5.9699 -3.6183 36 1 7.9594 4.8293 -4.8454 37 1 6.8096 5.7199 -3.8194 38 1 9.6905 4.7566 -1.1184 39 1 10.8361 7.4210 2.3388 40 1 6.3968 3.7189 0.1804 41 1 7.8032 2.7489 -0.3514 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054639502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:01 Heat of formation + Delta-G solvation = 63.302286 kcal Electronic energy + Delta-G solvation = -23201.498227 eV Core-core repulsion = 19732.528189 eV Total energy + Delta-G solvation = -3468.970038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.27268 -39.84668 -37.67129 -34.20952 -33.79853 -32.61063 -32.49884 -31.09533 -30.03982 -28.00797 -27.87713 -26.01451 -23.82659 -22.01464 -21.38264 -20.76468 -20.11433 -19.00452 -18.00494 -17.59361 -16.97462 -16.15763 -15.77086 -15.31245 -14.77903 -14.43234 -14.20072 -13.83719 -13.43280 -13.29465 -13.24536 -13.18321 -12.98050 -12.85454 -12.64398 -12.16876 -12.00724 -11.90585 -11.76340 -11.41767 -11.14558 -10.81272 -10.65399 -10.39746 -10.28420 -10.14128 -9.98640 -9.82560 -9.66631 -9.50045 -9.05942 -8.40141 -7.40809 -5.85799 -3.23934 1.44294 2.44941 2.63966 2.78770 3.26869 3.31952 3.34826 3.41266 3.81464 4.38090 4.50955 4.56861 4.60656 4.97193 5.00921 5.01879 5.06796 5.10433 5.35515 5.41333 5.45345 5.51072 5.52014 5.69465 5.71269 5.77022 5.86401 6.09359 6.10756 6.12557 6.24297 6.29569 6.33199 6.44259 6.51196 6.75182 6.88040 7.70934 7.88552 7.97410 8.30590 8.33100 9.09430 9.81528 9.99580 11.31788 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.003352 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.720427 B = 8351.159307 C = 9042.340743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.281 3.719 3 N -0.529 5.529 4 C 0.257 3.743 5 C -0.047 4.047 6 C 0.538 3.462 7 O -0.545 6.545 8 N -0.613 5.613 9 C 0.119 3.881 10 C -0.117 4.117 11 H 0.082 0.918 12 C -0.136 4.136 13 C 0.183 3.817 14 H 0.075 0.925 15 N -0.735 5.735 16 C -0.252 4.252 17 H 0.093 0.907 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.883 3.117 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.276 1.276 24 C 0.070 3.930 25 N -0.306 5.306 26 N -0.484 5.484 27 H 0.438 0.562 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.364 0.636 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -14.102 -5.888 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 N -0.258 5.258 4 C -0.026 4.026 5 C -0.089 4.089 6 C 0.325 3.675 7 O -0.422 6.422 8 N -0.347 5.347 9 C -0.004 4.004 10 C -0.137 4.137 11 H 0.100 0.900 12 C -0.193 4.193 13 C 0.071 3.929 14 H 0.093 0.907 15 N -0.377 5.377 16 C -0.382 4.382 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.575 5.575 20 Si 0.713 3.287 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.202 1.202 24 C -0.056 4.056 25 N -0.134 5.134 26 N -0.203 5.203 27 H 0.284 0.716 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.198 0.802 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.865 -14.236 -6.141 21.479 hybrid contribution 0.996 -1.124 -0.242 1.522 sum -13.869 -15.360 -6.383 21.656 Atomic orbital electron populations 1.20380 0.83675 1.05009 1.04459 1.24365 0.96591 0.82811 0.95997 1.70311 1.01307 1.29509 1.24697 1.23295 0.92618 0.89659 0.97072 1.19886 0.93650 0.99002 0.96339 1.19758 0.79175 0.78201 0.90416 1.90696 1.52743 1.52110 1.46698 1.48430 1.30768 1.46512 1.09005 1.21950 0.96115 0.97807 0.84528 1.22521 0.97715 0.96226 0.97193 0.89982 1.21682 1.02595 0.97780 0.97284 1.21329 0.89663 0.93219 0.88693 0.90666 1.42651 1.01663 1.56347 1.37006 1.19059 0.95010 1.19411 1.04699 0.88922 1.24675 0.97264 0.99092 0.97603 1.69694 1.26469 1.37359 1.24023 0.86586 0.85116 0.78649 0.78357 1.20976 1.21696 1.20231 1.23503 0.93985 0.96279 0.91824 1.77980 0.96596 1.12296 1.26570 1.47922 1.04311 1.09915 1.58105 0.71645 0.89008 0.88294 0.89970 0.85743 0.86381 0.91964 0.91430 0.91443 0.93073 0.92474 0.80230 0.92896 0.90477 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.01 0.38 -0.04 16 2 C 0.28 3.07 8.24 -155.69 -1.28 1.78 16 3 N -0.53 -7.82 11.19 -8.16 -0.09 -7.91 16 4 C 0.26 3.95 6.63 -156.85 -1.04 2.91 16 5 C -0.05 -0.65 5.33 -29.03 -0.15 -0.81 16 6 C 0.54 8.89 7.84 -10.99 -0.09 8.80 16 7 O -0.54 -10.79 16.36 5.55 0.09 -10.70 16 8 N -0.61 -9.53 3.33 -170.51 -0.57 -10.10 16 9 C 0.12 1.73 6.48 -3.06 -0.02 1.71 16 10 C -0.12 -1.69 3.16 -88.78 -0.28 -1.97 16 11 H 0.08 1.18 8.00 -51.92 -0.42 0.77 16 12 C -0.14 -1.78 9.16 37.16 0.34 -1.44 16 13 C 0.18 3.18 3.14 -65.78 -0.21 2.97 16 14 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 15 N -0.74 -15.76 5.08 -51.35 -0.26 -16.02 16 16 C -0.25 -6.58 10.47 -15.06 -0.16 -6.74 16 17 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -27.93 13.97 55.49 0.78 -27.16 16 20 Si 0.88 20.97 27.74 -169.99 -4.71 16.26 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 24 C 0.07 1.11 6.38 -2.53 -0.02 1.09 16 25 N -0.31 -4.53 12.80 32.42 0.41 -4.11 16 26 N -0.48 -5.17 7.45 32.62 0.24 -4.93 16 27 H 0.44 2.82 8.96 -182.33 -1.63 1.18 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.12 1.56 7.85 -51.93 -0.41 1.15 16 32 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.97 7.77 -51.93 -0.40 0.57 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.36 7.73 5.57 -40.82 -0.23 7.50 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.08 1.19 7.48 -51.93 -0.39 0.80 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -35.60 344.71 -8.82 -44.42 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.29 Total: 6.58 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -2.62 Total: 8.46 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: 0.51 Total: -70.23 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.60 -8.82 -44.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054639502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.725 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds