Wall clock time and date at job start Tue Mar 31 2020 03:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.95883 * 2 1 4 4 C 1.33246 * 109.82627 * 180.23770 * 3 2 1 5 5 C 1.50698 * 125.52316 * 179.73039 * 4 3 2 6 6 C 1.50702 * 109.47384 * 270.01342 * 5 4 3 7 7 O 1.21286 * 119.99598 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00353 * 180.02562 * 6 5 4 9 9 C 1.47024 * 125.65055 * 179.71948 * 8 6 5 10 10 C 1.54328 * 107.26669 * 178.84677 * 9 8 6 11 11 H 1.09008 * 110.51228 * 96.45214 * 10 9 8 12 12 C 1.52999 * 110.84952 * 219.66917 * 10 9 8 13 13 C 1.55157 * 103.02215 * 338.14023 * 10 9 8 14 14 H 1.08998 * 111.03668 * 277.21847 * 13 10 9 15 15 N 1.46503 * 111.00312 * 153.37744 * 13 10 9 16 16 C 1.36939 * 119.99570 * 161.34948 * 15 13 10 17 17 H 1.07995 * 120.00539 * 0.02562 * 16 15 13 18 18 C 1.38815 * 119.99945 * 180.02562 * 16 15 13 19 19 N 1.31614 * 120.00300 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99811 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47204 * 89.99951 * 20 18 16 22 22 H 1.48502 * 109.47237 * 210.00193 * 20 18 16 23 23 H 1.48500 * 109.47157 * 330.00031 * 20 18 16 24 24 C 1.47423 * 125.64860 * 0.02562 * 8 6 5 25 25 N 1.30709 * 108.94800 * 359.76504 * 4 3 2 26 26 N 1.34429 * 125.96217 * 179.83158 * 2 1 3 27 27 H 0.97001 * 126.82629 * 0.04437 * 26 2 1 28 28 H 1.08998 * 109.47274 * 270.16602 * 1 2 3 29 29 H 1.08997 * 109.47016 * 30.17085 * 1 2 3 30 30 H 1.09003 * 109.46808 * 150.16938 * 1 2 3 31 31 H 1.09001 * 109.47705 * 30.01842 * 5 4 3 32 32 H 1.09007 * 109.46998 * 150.01972 * 5 4 3 33 33 H 1.09004 * 109.87906 * 298.39702 * 9 8 6 34 34 H 1.09005 * 109.87736 * 59.55681 * 9 8 6 35 35 H 1.09005 * 109.47167 * 173.69280 * 12 10 9 36 36 H 1.08991 * 109.47472 * 293.69197 * 12 10 9 37 37 H 1.08998 * 109.47076 * 53.70028 * 12 10 9 38 38 H 0.96998 * 120.00528 * 341.35561 * 15 13 10 39 39 H 0.97001 * 120.00036 * 179.97438 * 19 18 16 40 40 H 1.09001 * 110.36433 * 322.93315 * 24 8 6 41 41 H 1.08997 * 110.36816 * 85.14387 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0052 5 6 4.7371 1.6237 -0.0127 6 6 5.1243 1.9327 -1.4359 7 8 4.5014 1.4423 -2.3539 8 7 6.1627 2.7538 -1.6888 9 6 6.6494 3.1339 -3.0230 10 6 7.8298 4.1072 -2.8199 11 1 8.7786 3.5730 -2.8716 12 6 7.7867 5.2378 -3.8498 13 6 7.5869 4.6577 -1.3898 14 1 6.8668 5.4759 -1.4025 15 7 8.8451 5.0787 -0.7685 16 6 8.8276 5.9270 0.3063 17 1 7.8864 6.2855 0.6962 18 6 10.0197 6.3264 0.8947 19 7 10.0031 7.1422 1.9274 20 14 11.6478 5.7071 0.2200 21 1 12.1384 6.6417 -0.8245 22 1 12.6419 5.6284 1.3203 23 1 11.4573 4.3587 -0.3723 24 6 7.0025 3.4148 -0.6733 25 7 3.6195 -0.6167 -0.0035 26 7 2.2964 -1.0881 0.0032 27 1 2.0094 -2.0146 0.0053 28 1 -0.3634 0.0030 1.0276 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 4.4726 2.5481 0.5008 32 1 5.5768 1.1520 0.4980 33 1 6.9855 2.2476 -3.5613 34 1 5.8544 3.6294 -3.5803 35 1 8.5604 5.9699 -3.6183 36 1 7.9594 4.8293 -4.8454 37 1 6.8096 5.7199 -3.8194 38 1 9.6905 4.7566 -1.1184 39 1 10.8361 7.4210 2.3388 40 1 6.3968 3.7189 0.1804 41 1 7.8032 2.7489 -0.3514 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054639502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:00 Heat of formation + Delta-G solvation = 37.507463 kcal Electronic energy + Delta-G solvation = -23202.616775 eV Core-core repulsion = 19732.528189 eV Total energy + Delta-G solvation = -3470.088586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.21375 -41.14873 -39.04129 -35.95081 -34.77764 -33.98286 -33.39172 -32.89174 -31.01282 -29.43875 -28.76700 -27.13838 -25.60857 -23.22528 -22.55080 -21.85261 -21.47104 -20.21960 -19.47463 -18.91636 -18.24677 -17.48600 -16.89293 -16.46871 -16.28968 -15.87996 -15.29071 -15.06718 -14.79494 -14.59127 -14.48899 -14.35460 -14.10984 -13.68792 -13.65289 -13.44571 -13.24467 -13.08600 -12.92708 -12.88768 -12.76248 -12.25175 -12.06784 -11.91337 -11.76813 -11.38646 -11.32811 -11.14418 -11.04107 -10.91915 -10.50075 -9.73829 -9.30327 -7.97543 -5.32825 0.52142 1.43983 1.46363 1.50123 1.53050 1.55843 1.70961 2.10119 2.53079 2.96075 3.29473 3.33128 3.48695 3.68688 3.75990 3.87926 3.89223 4.07549 4.30587 4.34322 4.38649 4.42765 4.58240 4.68642 4.70386 4.72609 4.88832 4.92325 5.03094 5.09884 5.11407 5.17507 5.21755 5.28849 5.34466 5.47196 5.82692 6.19597 6.25638 6.41908 7.01900 7.03417 7.11391 7.84715 8.04082 9.23314 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.003352 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.720427 B = 8351.159307 C = 9042.340743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.287 3.713 3 N -0.570 5.570 4 C 0.239 3.761 5 C -0.044 4.044 6 C 0.538 3.462 7 O -0.579 6.579 8 N -0.610 5.610 9 C 0.119 3.881 10 C -0.104 4.104 11 H 0.091 0.909 12 C -0.133 4.133 13 C 0.174 3.826 14 H 0.065 0.935 15 N -0.735 5.735 16 C -0.228 4.228 17 H 0.063 0.937 18 C -0.059 4.059 19 N -0.982 5.982 20 Si 0.949 3.051 21 H -0.280 1.280 22 H -0.302 1.302 23 H -0.247 1.247 24 C 0.079 3.921 25 N -0.337 5.337 26 N -0.473 5.473 27 H 0.456 0.544 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.369 0.631 39 H 0.257 0.743 40 H 0.079 0.921 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.594 -15.945 -7.242 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.300 5.300 4 C -0.045 4.045 5 C -0.086 4.086 6 C 0.326 3.674 7 O -0.460 6.460 8 N -0.343 5.343 9 C -0.004 4.004 10 C -0.123 4.123 11 H 0.109 0.891 12 C -0.191 4.191 13 C 0.064 3.936 14 H 0.083 0.917 15 N -0.377 5.377 16 C -0.359 4.359 17 H 0.081 0.919 18 C -0.251 4.251 19 N -0.632 5.632 20 Si 0.777 3.223 21 H -0.207 1.207 22 H -0.229 1.229 23 H -0.172 1.172 24 C -0.046 4.046 25 N -0.166 5.166 26 N -0.194 5.194 27 H 0.305 0.695 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.203 0.797 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.485 -16.140 -7.541 23.604 hybrid contribution 0.987 -0.584 0.155 1.157 sum -14.498 -16.724 -7.386 23.333 Atomic orbital electron populations 1.20658 0.79811 1.06465 1.06266 1.25295 0.98381 0.81895 0.93528 1.70296 1.01553 1.31547 1.26639 1.23478 0.93243 0.90029 0.97733 1.19925 0.94194 0.99640 0.94857 1.20128 0.78659 0.77581 0.91036 1.90671 1.53850 1.53507 1.47945 1.48427 1.30445 1.46088 1.09341 1.22028 0.96100 0.98113 0.84155 1.22450 0.98093 0.96489 0.95282 0.89105 1.21670 1.02298 0.97004 0.98096 1.21469 0.87949 0.93488 0.90708 0.91721 1.42550 1.03361 1.55798 1.36020 1.19001 0.93646 1.18433 1.04829 0.91905 1.25435 1.01134 1.00125 0.98356 1.69873 1.27084 1.39932 1.26320 0.85500 0.80059 0.79447 0.77297 1.20681 1.22916 1.17171 1.23265 0.94117 0.95488 0.91723 1.77849 0.98996 1.12296 1.27500 1.47843 1.03106 1.11014 1.57418 0.69524 0.86817 0.88455 0.86833 0.84713 0.84859 0.91122 0.91187 0.92626 0.90620 0.92346 0.79678 0.93435 0.90222 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.29 5.83 8.24 138.23 1.14 6.97 16 3 N -0.57 -16.55 11.19 -179.73 -2.01 -18.56 16 4 C 0.24 7.26 6.63 138.63 0.92 8.18 16 5 C -0.04 -1.22 5.33 29.10 0.16 -1.07 16 6 C 0.54 17.42 7.84 87.66 0.69 18.11 16 7 O -0.58 -22.74 16.36 -3.05 -0.05 -22.79 16 8 N -0.61 -18.16 3.33 -811.77 -2.70 -20.86 16 9 C 0.12 3.20 6.48 86.73 0.56 3.77 16 10 C -0.10 -2.76 3.16 -9.60 -0.03 -2.79 16 11 H 0.09 2.32 8.00 -2.38 -0.02 2.30 16 12 C -0.13 -3.17 9.16 71.98 0.66 -2.51 16 13 C 0.17 5.84 3.14 46.38 0.15 5.98 16 14 H 0.06 2.33 8.04 -2.39 -0.02 2.31 16 15 N -0.73 -30.54 5.08 -316.37 -1.61 -32.15 16 16 C -0.23 -11.95 10.47 84.03 0.88 -11.07 16 17 H 0.06 3.62 8.06 -2.91 -0.02 3.59 16 18 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 19 N -0.98 -60.56 13.97 21.65 0.30 -60.25 16 20 Si 0.95 42.96 27.74 68.60 1.90 44.86 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.25 -9.88 6.52 99.48 0.65 -9.23 16 24 C 0.08 2.42 6.38 86.86 0.55 2.98 16 25 N -0.34 -9.79 12.80 -51.33 -0.66 -10.45 16 26 N -0.47 -9.47 7.45 -50.71 -0.38 -9.85 16 27 H 0.46 5.02 8.96 -213.09 -1.91 3.11 16 28 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.22 16 31 H 0.14 3.34 7.85 -2.39 -0.02 3.32 16 32 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 33 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.07 1.88 7.77 -2.38 -0.02 1.86 16 35 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.37 8.07 -2.39 -0.02 1.35 16 38 H 0.37 14.73 5.57 -92.71 -0.52 14.21 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 40 H 0.08 2.40 7.48 -2.39 -0.02 2.38 16 41 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -78.37 344.71 0.26 -78.10 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -1.43 Total: 26.05 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 6.89 Total: 25.89 kcal Atomic # 7 Polarization: -145.06 SS G_CDS: -7.05 Total: -152.11 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.90 Total: 44.86 kcal Total: -78.37 0.26 -78.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054639502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.610 kcal (2) G-P(sol) polarization free energy of solvation -78.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds