Wall clock time and date at job start Tue Mar 31 2020 03:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30825 * 125.96499 * 2 1 4 4 C 1.33242 * 109.83290 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.52803 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47276 * 89.99872 * 5 4 3 7 7 O 1.21277 * 119.99622 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99944 * 180.02562 * 6 5 4 9 9 C 1.47022 * 125.64623 * 179.97438 * 8 6 5 10 10 C 1.54327 * 107.26741 * 178.97618 * 9 8 6 11 11 H 1.09005 * 110.71723 * 96.17307 * 10 9 8 12 12 C 1.53003 * 110.87080 * 219.37085 * 10 9 8 13 13 C 1.55150 * 102.94568 * 337.80866 * 10 9 8 14 14 H 1.09002 * 111.00537 * 153.61586 * 13 10 9 15 15 N 1.46506 * 111.00608 * 277.42734 * 13 10 9 16 16 C 1.36934 * 120.00324 * 201.81780 * 15 13 10 17 17 H 1.07997 * 119.99709 * 0.02562 * 16 15 13 18 18 C 1.38805 * 120.00305 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99748 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00113 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47071 * 90.00745 * 20 18 16 22 22 H 1.48508 * 109.47024 * 210.00164 * 20 18 16 23 23 H 1.48488 * 109.47235 * 330.00343 * 20 18 16 24 24 C 1.47525 * 125.63436 * 0.03699 * 8 6 5 25 25 N 1.30712 * 108.94465 * 0.25994 * 4 3 2 26 26 N 1.34431 * 125.95965 * 180.02562 * 2 1 3 27 27 H 0.97007 * 126.82120 * 359.97427 * 26 2 1 28 28 H 1.08996 * 109.46473 * 89.97583 * 1 2 3 29 29 H 1.09000 * 109.47069 * 209.97632 * 1 2 3 30 30 H 1.09001 * 109.46681 * 329.97864 * 1 2 3 31 31 H 1.08996 * 109.47630 * 329.99705 * 5 4 3 32 32 H 1.09007 * 109.47345 * 209.99664 * 5 4 3 33 33 H 1.08995 * 109.87982 * 59.56254 * 9 8 6 34 34 H 1.08997 * 109.88284 * 298.39497 * 9 8 6 35 35 H 1.08997 * 109.46805 * 173.61085 * 12 10 9 36 36 H 1.08997 * 109.47316 * 293.61544 * 12 10 9 37 37 H 1.09005 * 109.46834 * 53.61795 * 12 10 9 38 38 H 0.97002 * 119.99472 * 21.81781 * 15 13 10 39 39 H 0.97000 * 119.99823 * 180.02562 * 19 18 16 40 40 H 1.09001 * 110.36898 * 85.27619 * 24 8 6 41 41 H 1.08991 * 110.41716 * 322.91890 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 -0.0006 5 6 4.7373 1.6234 -0.0002 6 6 5.1317 1.9341 1.4208 7 8 4.5134 1.4450 2.3424 8 7 6.1707 2.7564 1.6673 9 6 6.6602 3.1431 2.9987 10 6 7.8751 4.0712 2.7883 11 1 7.5740 5.1177 2.8370 12 6 8.9703 3.7767 3.8154 13 6 8.3504 3.7028 1.3581 14 1 8.8700 4.5396 0.8913 15 7 9.1974 2.5075 1.3777 16 6 10.0667 2.2673 0.3473 17 1 10.1282 2.9591 -0.4797 18 6 10.8695 1.1351 0.3661 19 7 10.7949 0.2922 1.3743 20 14 12.0559 0.8078 -1.0392 21 1 13.3661 1.4384 -0.7379 22 1 12.2375 -0.6570 -1.2027 23 1 11.5072 1.3817 -2.2940 24 6 7.0043 3.4182 0.6458 25 7 3.6195 -0.6169 -0.0065 26 7 2.2965 -1.0881 -0.0005 27 1 2.0093 -2.0147 -0.0006 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5142 31 1 4.4702 2.5472 -0.5133 32 1 5.5743 1.1511 -0.5145 33 1 6.9634 2.2557 3.5543 34 1 5.8780 3.6737 3.5415 35 1 9.8583 4.3624 3.5776 36 1 8.6155 4.0425 4.8111 37 1 9.2173 2.7153 3.7889 38 1 9.1424 1.8863 2.1207 39 1 11.3562 -0.4988 1.3877 40 1 6.5407 4.3507 0.3238 41 1 7.1585 2.7563 -0.2063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054639503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:03 Heat of formation + Delta-G solvation = 36.662415 kcal Electronic energy + Delta-G solvation = -23619.245340 eV Core-core repulsion = 20149.120111 eV Total energy + Delta-G solvation = -3470.125230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.21215 -41.08839 -39.00797 -35.63417 -34.76300 -33.88247 -33.39386 -32.26395 -30.97968 -29.30613 -28.75862 -27.09752 -25.75994 -23.66165 -22.61786 -21.79554 -20.63163 -20.17479 -19.32357 -18.89314 -18.12852 -17.39441 -16.79969 -16.54535 -16.09616 -15.84076 -15.55419 -15.15779 -14.69929 -14.61498 -14.36750 -14.08975 -13.70463 -13.64505 -13.50877 -13.38659 -13.14136 -12.96458 -12.83646 -12.78370 -12.75228 -12.24772 -12.10906 -11.94822 -11.45939 -11.37136 -11.27975 -11.15282 -11.01255 -10.88876 -10.50966 -9.65779 -8.92130 -7.89252 -5.17039 0.53551 1.50798 1.51488 1.53846 1.59528 1.61215 1.72066 2.20802 2.59899 2.96385 3.42227 3.47794 3.52068 3.80082 3.91860 3.93070 3.99173 4.15451 4.33791 4.34134 4.45829 4.66642 4.69469 4.70720 4.72052 4.83481 4.89222 4.99841 5.03369 5.03965 5.20782 5.24220 5.26564 5.30156 5.43897 5.56460 5.63009 6.19627 6.31775 6.53811 7.02508 7.10005 7.38999 8.15502 8.36992 9.34348 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015828 B = 0.004183 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.639454 B = 6692.783827 C = 7880.470285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.286 3.714 3 N -0.564 5.564 4 C 0.240 3.760 5 C -0.039 4.039 6 C 0.532 3.468 7 O -0.590 6.590 8 N -0.603 5.603 9 C 0.116 3.884 10 C -0.098 4.098 11 H 0.122 0.878 12 C -0.126 4.126 13 C 0.158 3.842 14 H 0.091 0.909 15 N -0.723 5.723 16 C -0.230 4.230 17 H 0.088 0.912 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.967 3.033 21 H -0.289 1.289 22 H -0.307 1.307 23 H -0.264 1.264 24 C 0.072 3.928 25 N -0.346 5.346 26 N -0.475 5.475 27 H 0.455 0.545 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.148 0.852 32 H 0.119 0.881 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.372 0.628 39 H 0.246 0.754 40 H 0.104 0.896 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.030 5.876 -3.541 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.008 3.992 3 N -0.294 5.294 4 C -0.044 4.044 5 C -0.080 4.080 6 C 0.320 3.680 7 O -0.472 6.472 8 N -0.335 5.335 9 C -0.006 4.006 10 C -0.117 4.117 11 H 0.140 0.860 12 C -0.184 4.184 13 C 0.048 3.952 14 H 0.109 0.891 15 N -0.362 5.362 16 C -0.362 4.362 17 H 0.105 0.895 18 C -0.269 4.269 19 N -0.623 5.623 20 Si 0.797 3.203 21 H -0.217 1.217 22 H -0.234 1.234 23 H -0.189 1.189 24 C -0.053 4.053 25 N -0.175 5.175 26 N -0.196 5.196 27 H 0.303 0.697 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.166 0.834 32 H 0.137 0.863 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.204 0.796 39 H 0.055 0.945 40 H 0.122 0.878 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.727 5.570 -3.263 19.808 hybrid contribution 0.762 -1.799 -0.143 1.959 sum -17.964 3.771 -3.406 18.669 Atomic orbital electron populations 1.20665 0.79486 1.06490 1.06362 1.25385 0.98469 0.81842 0.93481 1.70262 1.01103 1.31317 1.26719 1.23507 0.93404 0.89921 0.97546 1.19872 0.93578 0.99828 0.94771 1.20193 0.79141 0.77561 0.91078 1.90647 1.55144 1.53551 1.47847 1.48392 1.29928 1.45849 1.09291 1.21986 0.96522 0.97686 0.84437 1.22507 0.93466 1.00129 0.95627 0.86049 1.21523 0.97929 1.00798 0.98155 1.21715 0.89323 0.90067 0.94081 0.89093 1.42589 1.44378 1.24822 1.24427 1.19692 1.12367 1.04381 0.99757 0.89463 1.25504 1.02838 0.98148 1.00416 1.69844 1.44267 1.14635 1.33602 0.85225 0.79287 0.75934 0.79837 1.21673 1.23438 1.18884 1.23492 0.92482 0.97855 0.91454 1.77945 0.99175 1.12862 1.27554 1.47855 1.03054 1.11099 1.57560 0.69661 0.86596 0.87046 0.88190 0.83450 0.86318 0.94715 0.90802 0.92161 0.91270 0.95167 0.79564 0.94512 0.87836 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.51 71.24 0.75 0.07 16 2 C 0.29 6.54 8.24 138.23 1.14 7.68 16 3 N -0.56 -17.53 11.19 -179.73 -2.01 -19.54 16 4 C 0.24 8.31 6.63 138.63 0.92 9.23 16 5 C -0.04 -1.24 5.33 29.10 0.16 -1.08 16 6 C 0.53 20.36 7.84 87.66 0.69 21.05 16 7 O -0.59 -27.24 16.36 -3.02 -0.05 -27.29 16 8 N -0.60 -20.83 3.33 -811.50 -2.70 -23.53 16 9 C 0.12 3.86 6.46 86.73 0.56 4.42 16 10 C -0.10 -2.80 3.41 -9.61 -0.03 -2.83 16 11 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 12 C -0.13 -3.91 8.73 71.98 0.63 -3.29 16 13 C 0.16 5.35 3.45 46.39 0.16 5.51 16 14 H 0.09 2.80 8.11 -2.39 -0.02 2.78 16 15 N -0.72 -33.63 4.67 -316.34 -1.48 -35.11 16 16 C -0.23 -11.86 9.97 84.03 0.84 -11.02 16 17 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 18 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 19 N -0.97 -59.64 13.06 21.65 0.28 -59.35 16 20 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.31 -14.98 7.11 99.48 0.71 -14.28 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 C 0.07 2.16 6.39 86.84 0.56 2.71 16 25 N -0.35 -12.14 12.80 -51.34 -0.66 -12.80 16 26 N -0.48 -11.56 7.45 -50.70 -0.38 -11.94 16 27 H 0.45 7.04 8.96 -213.09 -1.91 5.13 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.15 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.12 3.77 7.85 -2.38 -0.02 3.75 16 33 H 0.03 1.36 7.78 -2.39 -0.02 1.35 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.03 1.16 6.43 -2.38 -0.02 1.15 16 38 H 0.37 19.64 6.23 -92.71 -0.58 19.07 16 39 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.07 2.30 7.48 -2.39 -0.02 2.28 16 Total: -1.00 -81.79 344.45 0.44 -81.35 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -1.43 Total: 32.29 kcal Atomic # 6 Polarization: 21.78 SS G_CDS: 6.83 Total: 28.60 kcal Atomic # 7 Polarization: -155.33 SS G_CDS: -6.94 Total: -162.27 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -81.79 0.44 -81.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054639503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.015 kcal (2) G-P(sol) polarization free energy of solvation -81.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds