Wall clock time and date at job start Tue Mar 31 2020 03:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30830 * 125.96131 * 2 1 4 4 C 1.33240 * 109.83046 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52624 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47003 * 89.99489 * 5 4 3 7 7 O 1.21281 * 119.99961 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99741 * 179.97438 * 6 5 4 9 9 C 1.47031 * 125.64691 * 180.02562 * 8 6 5 10 10 C 1.54327 * 107.26879 * 181.01415 * 9 8 6 11 11 H 1.08997 * 110.72099 * 263.64813 * 10 9 8 12 12 C 1.53004 * 110.71769 * 140.55849 * 10 9 8 13 13 C 1.55156 * 102.94181 * 22.19441 * 10 9 8 14 14 H 1.09003 * 110.99778 * 206.42172 * 13 10 9 15 15 N 1.46499 * 111.00599 * 82.57202 * 13 10 9 16 16 C 1.36938 * 120.00022 * 154.99794 * 15 13 10 17 17 H 1.07997 * 120.00064 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99829 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47426 * 89.99509 * 20 18 16 22 22 H 1.48497 * 109.47091 * 209.99431 * 20 18 16 23 23 H 1.48500 * 109.47146 * 329.99510 * 20 18 16 24 24 C 1.47422 * 125.65171 * 359.94939 * 8 6 5 25 25 N 1.30714 * 108.94724 * 0.26048 * 4 3 2 26 26 N 1.34427 * 125.96256 * 179.97438 * 2 1 3 27 27 H 0.96995 * 126.82631 * 0.02562 * 26 2 1 28 28 H 1.09003 * 109.46887 * 90.03076 * 1 2 3 29 29 H 1.09010 * 109.46917 * 210.02547 * 1 2 3 30 30 H 1.08991 * 109.47480 * 330.02710 * 1 2 3 31 31 H 1.09001 * 109.47069 * 329.99984 * 5 4 3 32 32 H 1.08991 * 109.47283 * 209.99486 * 5 4 3 33 33 H 1.08998 * 109.88059 * 61.59780 * 9 8 6 34 34 H 1.08994 * 109.87878 * 300.43060 * 9 8 6 35 35 H 1.08999 * 109.47046 * 61.44759 * 12 10 9 36 36 H 1.08993 * 109.46868 * 181.45487 * 12 10 9 37 37 H 1.09009 * 109.46992 * 301.45327 * 12 10 9 38 38 H 0.96998 * 120.00098 * 334.99742 * 15 13 10 39 39 H 0.96993 * 120.00101 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.36378 * 37.07938 * 24 8 6 41 41 H 1.09001 * 110.46274 * 274.80114 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.1307 1.9364 1.4209 7 8 4.5126 1.4478 2.3429 8 7 6.1702 2.7582 1.6669 9 6 6.6598 3.1459 2.9980 10 6 7.8428 4.1142 2.7869 11 1 8.7918 3.5806 2.8387 12 6 7.8046 5.2475 3.8140 13 6 7.5934 4.6610 1.3564 14 1 8.5275 4.9729 0.8891 15 7 6.6256 5.7606 1.3759 16 6 6.6348 6.6986 0.3784 17 1 7.3559 6.6281 -0.4225 18 6 5.7181 7.7408 0.3972 19 7 4.8397 7.8272 1.3735 20 14 5.7303 9.0201 -0.9641 21 1 4.8342 8.5812 -2.0639 22 1 5.2540 10.3197 -0.4263 23 1 7.1125 9.1762 -1.4842 24 6 7.0058 3.4160 0.6458 25 7 3.6194 -0.6168 -0.0047 26 7 2.2964 -1.0881 0.0005 27 1 2.0094 -2.0146 0.0006 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8901 0.5134 31 1 4.4701 2.5467 -0.5143 32 1 5.5744 1.1507 -0.5130 33 1 6.9959 2.2627 3.5410 34 1 5.8663 3.6457 3.5536 35 1 7.8926 4.8314 4.8176 36 1 8.6326 5.9321 3.6306 37 1 6.8611 5.7864 3.7255 38 1 5.9782 5.8242 2.0955 39 1 4.1989 8.5552 1.3864 40 1 6.3965 3.7178 -0.2060 41 1 7.8063 2.7507 0.3221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054639504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:11 Heat of formation + Delta-G solvation = 63.538118 kcal Electronic energy + Delta-G solvation = -23639.602540 eV Core-core repulsion = 20170.642728 eV Total energy + Delta-G solvation = -3468.959812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.13441 -39.65866 -37.51598 -33.83541 -33.64564 -32.40521 -32.33781 -30.51476 -29.84715 -27.86662 -27.67895 -25.75737 -23.83074 -22.26294 -21.50440 -20.66104 -19.20175 -18.81191 -17.87231 -17.48425 -16.67908 -15.85908 -15.59021 -15.17282 -14.54256 -14.42162 -14.07504 -13.73583 -13.56492 -13.08276 -13.01928 -12.98485 -12.81348 -12.65408 -12.10724 -12.00293 -11.85014 -11.70928 -11.47073 -11.07862 -10.89680 -10.69982 -10.41695 -10.25057 -10.14353 -9.98015 -9.93081 -9.64884 -9.60826 -9.32568 -9.00573 -8.17447 -7.00798 -5.80026 -3.10185 1.56798 2.57674 2.80518 3.02651 3.42297 3.47375 3.49499 3.50078 3.97574 4.51847 4.55425 4.71402 4.82663 5.13711 5.18128 5.21098 5.22886 5.37767 5.47897 5.59431 5.60387 5.65702 5.71417 5.81219 5.98189 6.02092 6.21922 6.24219 6.26006 6.36998 6.40700 6.42855 6.55215 6.66616 6.81083 6.99078 7.00733 7.66547 7.95598 8.12446 8.37385 8.54841 9.49297 10.04783 10.39306 11.41888 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.004380 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.443331 B = 6390.622400 C = 7671.567135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.525 5.525 4 C 0.260 3.740 5 C -0.046 4.046 6 C 0.539 3.461 7 O -0.547 6.547 8 N -0.602 5.602 9 C 0.118 3.882 10 C -0.115 4.115 11 H 0.078 0.922 12 C -0.132 4.132 13 C 0.172 3.828 14 H 0.075 0.925 15 N -0.708 5.708 16 C -0.248 4.248 17 H 0.072 0.928 18 C -0.007 4.007 19 N -0.927 5.927 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.064 3.936 25 N -0.310 5.310 26 N -0.486 5.486 27 H 0.437 0.563 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.081 0.919 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 -15.888 -2.316 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 N -0.254 5.254 4 C -0.024 4.024 5 C -0.088 4.088 6 C 0.326 3.674 7 O -0.425 6.425 8 N -0.335 5.335 9 C -0.004 4.004 10 C -0.135 4.135 11 H 0.097 0.903 12 C -0.190 4.190 13 C 0.059 3.941 14 H 0.093 0.907 15 N -0.348 5.348 16 C -0.379 4.379 17 H 0.090 0.910 18 C -0.204 4.204 19 N -0.574 5.574 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.062 4.062 25 N -0.138 5.138 26 N -0.204 5.204 27 H 0.282 0.718 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.223 0.777 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.501 -16.049 -1.984 16.241 hybrid contribution -0.666 0.064 -0.570 0.879 sum -2.167 -15.985 -2.554 16.332 Atomic orbital electron populations 1.20379 0.83725 1.05040 1.04385 1.24380 0.96609 0.82777 0.96062 1.70356 1.01382 1.29409 1.24281 1.23316 0.92691 0.89561 0.96784 1.19877 0.93303 0.98935 0.96667 1.19656 0.79094 0.78363 0.90272 1.90684 1.52766 1.52743 1.46325 1.48243 1.30674 1.45929 1.08648 1.21935 0.96500 0.97364 0.84622 1.22540 0.96906 0.96215 0.97849 0.90325 1.21612 1.03796 0.97348 0.96243 1.21340 0.93582 0.87283 0.91860 0.90731 1.42381 1.37389 1.25747 1.29326 1.19228 1.13661 1.02737 1.02299 0.90971 1.24748 0.98259 0.99090 0.98268 1.69660 1.21414 1.33625 1.32725 0.86218 0.77469 0.81200 0.81410 1.21675 1.21835 1.20725 1.23493 0.94201 0.95856 0.92633 1.77939 0.96604 1.12290 1.27012 1.47909 1.04337 1.09819 1.58349 0.71779 0.89068 0.90023 0.88219 0.85633 0.86819 0.92463 0.91493 0.93843 0.92339 0.90932 0.77720 0.93370 0.90036 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.51 36.01 0.38 -0.18 16 2 C 0.28 3.58 8.24 -155.70 -1.28 2.30 16 3 N -0.53 -9.04 11.19 -8.16 -0.09 -9.13 16 4 C 0.26 4.48 6.63 -156.85 -1.04 3.44 16 5 C -0.05 -0.73 5.33 -29.03 -0.15 -0.89 16 6 C 0.54 10.27 7.84 -10.98 -0.09 10.19 16 7 O -0.55 -12.31 16.36 5.56 0.09 -12.22 16 8 N -0.60 -10.67 3.33 -170.50 -0.57 -11.23 16 9 C 0.12 2.02 6.46 -3.06 -0.02 2.00 16 10 C -0.12 -1.79 3.42 -88.78 -0.30 -2.09 16 11 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 12 C -0.13 -2.12 8.80 37.16 0.33 -1.80 16 13 C 0.17 3.09 3.47 -65.77 -0.23 2.87 16 14 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 15 N -0.71 -16.45 4.56 -51.34 -0.23 -16.69 16 16 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 20 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.06 1.04 6.39 -2.52 -0.02 1.03 16 25 N -0.31 -4.96 12.80 32.42 0.41 -4.55 16 26 N -0.49 -5.84 7.45 32.62 0.24 -5.60 16 27 H 0.44 3.30 8.96 -182.34 -1.63 1.67 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.13 1.98 7.85 -51.93 -0.41 1.57 16 32 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.27 7.82 -51.93 -0.41 0.87 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.40 6.34 -51.92 -0.33 1.07 16 38 H 0.39 9.92 6.32 -40.82 -0.26 9.66 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 1.40 7.48 -51.93 -0.39 1.01 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -35.77 344.44 -9.12 -44.88 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.19 Total: 9.30 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.67 Total: 9.98 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: 0.49 Total: -73.81 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.77 -9.12 -44.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054639504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.423 kcal (2) G-P(sol) polarization free energy of solvation -35.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds