Wall clock time and date at job start Tue Mar 31 2020 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30830 * 125.96131 * 2 1 4 4 C 1.33240 * 109.83046 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52624 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47003 * 89.99489 * 5 4 3 7 7 O 1.21281 * 119.99961 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99741 * 179.97438 * 6 5 4 9 9 C 1.47031 * 125.64691 * 180.02562 * 8 6 5 10 10 C 1.54327 * 107.26879 * 181.01415 * 9 8 6 11 11 H 1.08997 * 110.72099 * 263.64813 * 10 9 8 12 12 C 1.53004 * 110.71769 * 140.55849 * 10 9 8 13 13 C 1.55156 * 102.94181 * 22.19441 * 10 9 8 14 14 H 1.09003 * 110.99778 * 206.42172 * 13 10 9 15 15 N 1.46499 * 111.00599 * 82.57202 * 13 10 9 16 16 C 1.36938 * 120.00022 * 154.99794 * 15 13 10 17 17 H 1.07997 * 120.00064 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99829 * 180.02562 * 16 15 13 19 19 N 1.31619 * 120.00175 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47426 * 89.99509 * 20 18 16 22 22 H 1.48497 * 109.47091 * 209.99431 * 20 18 16 23 23 H 1.48500 * 109.47146 * 329.99510 * 20 18 16 24 24 C 1.47422 * 125.65171 * 359.94939 * 8 6 5 25 25 N 1.30714 * 108.94724 * 0.26048 * 4 3 2 26 26 N 1.34427 * 125.96256 * 179.97438 * 2 1 3 27 27 H 0.96995 * 126.82631 * 0.02562 * 26 2 1 28 28 H 1.09003 * 109.46887 * 90.03076 * 1 2 3 29 29 H 1.09010 * 109.46917 * 210.02547 * 1 2 3 30 30 H 1.08991 * 109.47480 * 330.02710 * 1 2 3 31 31 H 1.09001 * 109.47069 * 329.99984 * 5 4 3 32 32 H 1.08991 * 109.47283 * 209.99486 * 5 4 3 33 33 H 1.08998 * 109.88059 * 61.59780 * 9 8 6 34 34 H 1.08994 * 109.87878 * 300.43060 * 9 8 6 35 35 H 1.08999 * 109.47046 * 61.44759 * 12 10 9 36 36 H 1.08993 * 109.46868 * 181.45487 * 12 10 9 37 37 H 1.09009 * 109.46992 * 301.45327 * 12 10 9 38 38 H 0.96998 * 120.00098 * 334.99742 * 15 13 10 39 39 H 0.96993 * 120.00101 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.36378 * 37.07938 * 24 8 6 41 41 H 1.09001 * 110.46274 * 274.80114 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.1307 1.9364 1.4209 7 8 4.5126 1.4478 2.3429 8 7 6.1702 2.7582 1.6669 9 6 6.6598 3.1459 2.9980 10 6 7.8428 4.1142 2.7869 11 1 8.7918 3.5806 2.8387 12 6 7.8046 5.2475 3.8140 13 6 7.5934 4.6610 1.3564 14 1 8.5275 4.9729 0.8891 15 7 6.6256 5.7606 1.3759 16 6 6.6348 6.6986 0.3784 17 1 7.3559 6.6281 -0.4225 18 6 5.7181 7.7408 0.3972 19 7 4.8397 7.8272 1.3735 20 14 5.7303 9.0201 -0.9641 21 1 4.8342 8.5812 -2.0639 22 1 5.2540 10.3197 -0.4263 23 1 7.1125 9.1762 -1.4842 24 6 7.0058 3.4160 0.6458 25 7 3.6194 -0.6168 -0.0047 26 7 2.2964 -1.0881 0.0005 27 1 2.0094 -2.0146 0.0006 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8901 0.5134 31 1 4.4701 2.5467 -0.5143 32 1 5.5744 1.1507 -0.5130 33 1 6.9959 2.2627 3.5410 34 1 5.8663 3.6457 3.5536 35 1 7.8926 4.8314 4.8176 36 1 8.6326 5.9321 3.6306 37 1 6.8611 5.7864 3.7255 38 1 5.9782 5.8242 2.0955 39 1 4.1989 8.5552 1.3864 40 1 6.3965 3.7178 -0.2060 41 1 7.8063 2.7507 0.3221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054639504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:07 Heat of formation + Delta-G solvation = 37.616855 kcal Electronic energy + Delta-G solvation = -23640.726570 eV Core-core repulsion = 20170.642728 eV Total energy + Delta-G solvation = -3470.083842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -43.21965 -41.09168 -39.00571 -35.62739 -34.76703 -33.87358 -33.40183 -32.25247 -30.99258 -29.30851 -28.76429 -27.08253 -25.73512 -23.66323 -22.61891 -21.81457 -20.62264 -20.16863 -19.33368 -18.90898 -18.12947 -17.32639 -16.84854 -16.54045 -16.15267 -15.82220 -15.37461 -15.28291 -14.70258 -14.59800 -14.38636 -14.09649 -13.70764 -13.68022 -13.49666 -13.36595 -13.14100 -12.93884 -12.86029 -12.77762 -12.73933 -12.23653 -12.10215 -11.91025 -11.45208 -11.37467 -11.28642 -11.13321 -11.00969 -10.88555 -10.48661 -9.65858 -8.90781 -7.87268 -5.15221 0.50444 1.52642 1.53324 1.53742 1.61406 1.61588 1.70755 2.20710 2.61742 2.98054 3.43976 3.45891 3.51696 3.80802 3.90599 3.94530 4.00025 4.16067 4.30138 4.36233 4.46095 4.66305 4.67833 4.69331 4.73139 4.83001 4.89859 5.00077 5.03029 5.03797 5.19493 5.23177 5.27011 5.29965 5.44187 5.58734 5.64943 6.19674 6.33564 6.53967 7.04382 7.09919 7.40783 8.16701 8.38472 9.36325 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.004380 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.443331 B = 6390.622400 C = 7671.567135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.286 3.714 3 N -0.578 5.578 4 C 0.239 3.761 5 C -0.039 4.039 6 C 0.532 3.468 7 O -0.590 6.590 8 N -0.603 5.603 9 C 0.116 3.884 10 C -0.099 4.099 11 H 0.120 0.880 12 C -0.127 4.127 13 C 0.159 3.841 14 H 0.093 0.907 15 N -0.722 5.722 16 C -0.232 4.232 17 H 0.087 0.913 18 C -0.075 4.075 19 N -0.972 5.972 20 Si 0.967 3.033 21 H -0.293 1.293 22 H -0.304 1.304 23 H -0.264 1.264 24 C 0.071 3.929 25 N -0.330 5.330 26 N -0.471 5.471 27 H 0.457 0.543 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.031 0.969 38 H 0.371 0.629 39 H 0.247 0.753 40 H 0.070 0.930 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 -17.686 -3.546 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 N -0.308 5.308 4 C -0.045 4.045 5 C -0.081 4.081 6 C 0.320 3.680 7 O -0.472 6.472 8 N -0.335 5.335 9 C -0.007 4.007 10 C -0.118 4.118 11 H 0.138 0.862 12 C -0.185 4.185 13 C 0.049 3.951 14 H 0.110 0.890 15 N -0.360 5.360 16 C -0.364 4.364 17 H 0.105 0.895 18 C -0.267 4.267 19 N -0.623 5.623 20 Si 0.797 3.203 21 H -0.220 1.220 22 H -0.232 1.232 23 H -0.188 1.188 24 C -0.053 4.053 25 N -0.160 5.160 26 N -0.192 5.192 27 H 0.306 0.694 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.110 0.890 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.204 0.796 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.121 -17.907 -3.252 18.200 hybrid contribution -1.063 0.501 -0.148 1.184 sum -1.184 -17.406 -3.399 17.775 Atomic orbital electron populations 1.20656 0.79924 1.06351 1.06302 1.25259 0.98367 0.81896 0.93671 1.70328 1.02035 1.31886 1.26552 1.23491 0.93137 0.90125 0.97697 1.19875 0.94346 0.99092 0.94761 1.20198 0.78713 0.77985 0.91085 1.90648 1.54126 1.54581 1.47812 1.48371 1.30507 1.45280 1.09304 1.21991 0.96162 0.98063 0.84447 1.22526 0.97908 0.95573 0.95841 0.86200 1.21537 1.01607 0.97410 0.97959 1.21688 0.92971 0.86470 0.93985 0.88960 1.42569 1.38145 1.27014 1.28299 1.19698 1.12301 1.02136 1.02246 0.89507 1.25489 0.98953 1.01695 1.00552 1.69837 1.22911 1.34387 1.35138 0.85230 0.77978 0.78339 0.78749 1.22012 1.23168 1.18843 1.23478 0.94761 0.95628 0.91475 1.77801 0.98831 1.11872 1.27502 1.47813 1.03101 1.10893 1.57410 0.69426 0.86660 0.86566 0.88969 0.85968 0.83784 0.90919 0.94621 0.91554 0.92055 0.94943 0.79579 0.94455 0.91154 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.51 71.24 0.75 -0.16 16 2 C 0.29 7.01 8.24 138.23 1.14 8.15 16 3 N -0.58 -20.02 11.19 -179.73 -2.01 -22.03 16 4 C 0.24 8.26 6.63 138.63 0.92 9.18 16 5 C -0.04 -1.24 5.33 29.10 0.16 -1.08 16 6 C 0.53 20.31 7.84 87.66 0.69 21.00 16 7 O -0.59 -27.19 16.36 -3.03 -0.05 -27.24 16 8 N -0.60 -20.79 3.33 -811.74 -2.70 -23.49 16 9 C 0.12 3.85 6.46 86.73 0.56 4.41 16 10 C -0.10 -2.84 3.42 -9.60 -0.03 -2.87 16 11 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 12 C -0.13 -3.97 8.80 71.98 0.63 -3.34 16 13 C 0.16 5.37 3.47 46.39 0.16 5.54 16 14 H 0.09 2.84 8.09 -2.39 -0.02 2.82 16 15 N -0.72 -33.47 4.56 -316.34 -1.44 -34.92 16 16 C -0.23 -11.93 9.96 84.03 0.84 -11.09 16 17 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 19 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 20 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 24 C 0.07 2.14 6.39 86.86 0.55 2.69 16 25 N -0.33 -10.39 12.80 -51.33 -0.66 -11.05 16 26 N -0.47 -10.72 7.45 -50.71 -0.38 -11.10 16 27 H 0.46 5.98 8.96 -213.10 -1.91 4.07 16 28 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.12 3.90 7.85 -2.39 -0.02 3.89 16 32 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.03 1.27 6.34 -2.38 -0.02 1.26 16 38 H 0.37 19.63 6.32 -92.71 -0.59 19.05 16 39 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.07 2.30 7.48 -2.39 -0.02 2.28 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -81.27 344.44 0.47 -80.80 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -1.43 Total: 32.25 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 6.83 Total: 28.73 kcal Atomic # 7 Polarization: -154.76 SS G_CDS: -6.91 Total: -161.67 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -81.27 0.47 -80.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054639504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.415 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds