Wall clock time and date at job start Tue Mar 31 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.95883 * 2 1 4 4 C 1.33246 * 109.82627 * 180.23770 * 3 2 1 5 5 C 1.50698 * 125.52316 * 179.73039 * 4 3 2 6 6 C 1.50702 * 109.47384 * 270.01342 * 5 4 3 7 7 O 1.21286 * 119.99598 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00353 * 180.02562 * 6 5 4 9 9 C 1.47024 * 125.64545 * 0.02562 * 8 6 5 10 10 C 1.54333 * 107.26819 * 181.02299 * 9 8 6 11 11 H 1.08998 * 110.71848 * 263.65667 * 10 9 8 12 12 N 1.46497 * 110.71365 * 140.55799 * 10 9 8 13 13 C 1.36938 * 119.99911 * 86.45753 * 12 10 9 14 14 H 1.07999 * 120.00183 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00012 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00017 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99899 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47126 * 89.99568 * 17 15 13 19 19 H 1.48501 * 109.47030 * 209.99314 * 17 15 13 20 20 H 1.48497 * 109.47188 * 329.99414 * 17 15 13 21 21 C 1.55156 * 102.94123 * 22.19775 * 10 9 8 22 22 H 1.09000 * 111.00736 * 82.56689 * 21 10 9 23 23 C 1.52998 * 111.00200 * 206.38563 * 21 10 9 24 24 C 1.47420 * 125.64995 * 179.71977 * 8 6 5 25 25 N 1.30709 * 108.94800 * 359.76504 * 4 3 2 26 26 N 1.34429 * 125.96217 * 179.83158 * 2 1 3 27 27 H 0.97001 * 126.82629 * 0.04437 * 26 2 1 28 28 H 1.08998 * 109.47274 * 270.16602 * 1 2 3 29 29 H 1.08997 * 109.47016 * 30.17085 * 1 2 3 30 30 H 1.09003 * 109.46808 * 150.16938 * 1 2 3 31 31 H 1.09001 * 109.47705 * 30.01842 * 5 4 3 32 32 H 1.09007 * 109.46998 * 150.01972 * 5 4 3 33 33 H 1.08994 * 109.88875 * 300.44340 * 9 8 6 34 34 H 1.08998 * 109.87904 * 61.45916 * 9 8 6 35 35 H 0.96996 * 120.00215 * 266.44767 * 12 10 9 36 36 H 0.97000 * 120.00151 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.47216 * 60.00242 * 23 21 10 38 38 H 1.09005 * 109.47213 * 179.97438 * 23 21 10 39 39 H 1.09002 * 109.46929 * 299.99701 * 23 21 10 40 40 H 1.08999 * 110.36716 * 274.74487 * 24 8 6 41 41 H 1.09005 * 110.36458 * 37.06429 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0052 5 6 4.7371 1.6237 -0.0127 6 6 5.1243 1.9327 -1.4359 7 8 4.5014 1.4423 -2.3539 8 7 6.1627 2.7538 -1.6888 9 6 7.0002 3.4129 -0.6760 10 6 8.0399 4.2700 -1.4285 11 1 8.9811 3.7305 -1.5334 12 7 8.2506 5.5482 -0.7443 13 6 9.1668 5.6393 0.2694 14 1 9.7338 4.7688 0.5647 15 6 9.3668 6.8505 0.9173 16 7 10.2471 6.9379 1.8919 17 14 8.3856 8.3559 0.4071 18 1 7.1321 8.4220 1.2005 19 1 9.1918 9.5787 0.6525 20 1 8.0531 8.2638 -1.0372 21 6 7.3723 4.4913 -2.8115 22 1 6.6597 5.3151 -2.7741 23 6 8.4245 4.7289 -3.8965 24 6 6.6507 3.1349 -3.0266 25 7 3.6195 -0.6167 -0.0035 26 7 2.2964 -1.0881 0.0032 27 1 2.0094 -2.0146 0.0053 28 1 -0.3634 0.0030 1.0276 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 4.4726 2.5481 0.5008 32 1 5.5768 1.1520 0.4980 33 1 6.3833 4.0500 -0.0423 34 1 7.5053 2.6628 -0.0675 35 1 7.7412 6.3299 -1.0093 36 1 10.3866 7.7842 2.3450 37 1 9.0824 3.8622 -3.9607 38 1 7.9295 4.8805 -4.8558 39 1 9.0112 5.6128 -3.6463 40 1 7.3484 2.3869 -3.4032 41 1 5.8145 3.2556 -3.7153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054639505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:15 Heat of formation + Delta-G solvation = 63.510472 kcal Electronic energy + Delta-G solvation = -23227.531111 eV Core-core repulsion = 19758.570100 eV Total energy + Delta-G solvation = -3468.961011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.27505 -39.83786 -37.66500 -34.19953 -33.79884 -32.59903 -32.50019 -31.08500 -30.04013 -28.01816 -27.85591 -26.01010 -23.82884 -22.00027 -21.37901 -20.72731 -20.18726 -18.95798 -17.99098 -17.58245 -16.98783 -16.18033 -15.75859 -15.18805 -14.91417 -14.49550 -14.22749 -13.80159 -13.43283 -13.36841 -13.21887 -13.13084 -13.00301 -12.70720 -12.56481 -12.25013 -12.05462 -11.88794 -11.70350 -11.45547 -11.12618 -10.80974 -10.65309 -10.36528 -10.28483 -10.14340 -10.03925 -9.81835 -9.66045 -9.50180 -9.03611 -8.38662 -7.41387 -5.85552 -3.23619 1.44051 2.44759 2.63941 2.78740 3.27243 3.33222 3.36179 3.42097 3.81288 4.38070 4.51695 4.56849 4.61571 4.98304 5.00202 5.03810 5.05513 5.08449 5.35414 5.44803 5.45204 5.50512 5.51687 5.69717 5.71367 5.77485 5.86807 6.08424 6.09933 6.12762 6.25396 6.29917 6.36872 6.45959 6.50422 6.75502 6.87814 7.71354 7.88946 7.97182 8.30804 8.33186 9.09803 9.82089 10.00240 11.32054 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.003502 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.235763 B = 7994.303331 C = 8720.804437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.281 3.719 3 N -0.530 5.530 4 C 0.257 3.743 5 C -0.047 4.047 6 C 0.538 3.462 7 O -0.545 6.545 8 N -0.613 5.613 9 C 0.070 3.930 10 C 0.183 3.817 11 H 0.075 0.925 12 N -0.736 5.736 13 C -0.253 4.253 14 H 0.093 0.907 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.882 3.118 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.276 1.276 21 C -0.117 4.117 22 H 0.082 0.918 23 C -0.135 4.135 24 C 0.116 3.884 25 N -0.305 5.305 26 N -0.484 5.484 27 H 0.438 0.562 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.364 0.636 36 H 0.261 0.739 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.063 -13.259 -5.910 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 N -0.259 5.259 4 C -0.026 4.026 5 C -0.089 4.089 6 C 0.325 3.675 7 O -0.423 6.423 8 N -0.347 5.347 9 C -0.056 4.056 10 C 0.071 3.929 11 H 0.093 0.907 12 N -0.378 5.378 13 C -0.382 4.382 14 H 0.110 0.890 15 C -0.186 4.186 16 N -0.576 5.576 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.202 1.202 21 C -0.137 4.137 22 H 0.100 0.900 23 C -0.193 4.193 24 C -0.007 4.007 25 N -0.134 5.134 26 N -0.202 5.202 27 H 0.284 0.716 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.659 -13.598 -6.168 21.637 hybrid contribution -0.965 0.499 -0.086 1.090 sum -16.624 -13.100 -6.255 22.070 Atomic orbital electron populations 1.20378 0.83690 1.05001 1.04451 1.24360 0.96583 0.82820 0.96016 1.70310 1.01335 1.29529 1.24717 1.23299 0.92610 0.89668 0.97065 1.19884 0.93645 0.98985 0.96372 1.19757 0.79131 0.78238 0.90400 1.90695 1.52838 1.52095 1.46698 1.48455 1.30702 1.46494 1.09059 1.23321 0.93895 0.96653 0.91720 1.21208 0.95213 0.87839 0.88627 0.90676 1.42714 1.47667 1.05907 1.41498 1.19061 1.13848 0.97323 1.07978 0.88955 1.24674 0.98660 0.97385 0.97906 1.69694 1.36804 1.25655 1.25430 0.86592 0.80026 0.83916 0.78239 1.20939 1.21685 1.20194 1.22702 0.97865 0.96341 0.96762 0.89952 1.21628 0.98107 1.02586 0.96955 1.22285 0.98084 0.95597 0.84702 1.77980 0.96578 1.12275 1.26550 1.47922 1.04313 1.09911 1.58093 0.71636 0.89017 0.88322 0.89956 0.85836 0.86336 0.90571 0.91519 0.80222 0.92903 0.92493 0.93059 0.91444 0.91422 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.28 3.08 8.24 -155.69 -1.28 1.80 16 3 N -0.53 -7.88 11.19 -8.16 -0.09 -7.97 16 4 C 0.26 3.97 6.63 -156.85 -1.04 2.93 16 5 C -0.05 -0.66 5.52 -29.03 -0.16 -0.82 16 6 C 0.54 8.91 7.84 -10.99 -0.09 8.82 16 7 O -0.55 -10.79 16.29 5.55 0.09 -10.70 16 8 N -0.61 -9.52 3.32 -170.37 -0.57 -10.09 16 9 C 0.07 1.11 6.24 -3.06 -0.02 1.09 16 10 C 0.18 3.16 3.05 -66.09 -0.20 2.96 16 11 H 0.08 1.33 8.02 -51.93 -0.42 0.92 16 12 N -0.74 -15.84 4.98 -51.65 -0.26 -16.10 16 13 C -0.25 -6.59 10.46 -15.06 -0.16 -6.75 16 14 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 15 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 16 N -0.93 -27.98 13.97 55.49 0.78 -27.20 16 17 Si 0.88 21.08 27.74 -169.99 -4.71 16.36 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 21 C -0.12 -1.71 3.26 -88.35 -0.29 -2.00 16 22 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 23 C -0.14 -1.76 9.31 37.16 0.35 -1.41 16 24 C 0.12 1.67 6.38 -2.41 -0.02 1.65 16 25 N -0.31 -4.52 12.80 32.42 0.41 -4.11 16 26 N -0.48 -5.18 7.45 32.62 0.24 -4.94 16 27 H 0.44 2.82 8.96 -182.33 -1.63 1.19 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.36 7.82 5.57 -40.82 -0.23 7.59 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 41 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -35.63 345.60 -8.86 -44.49 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -7.34 Total: 6.63 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -2.62 Total: 8.43 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: 0.52 Total: -70.42 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.63 -8.86 -44.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054639505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.998 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds