Wall clock time and date at job start Tue Mar 31 2020 03:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.95883 * 2 1 4 4 C 1.33246 * 109.82627 * 180.23770 * 3 2 1 5 5 C 1.50698 * 125.52316 * 179.73039 * 4 3 2 6 6 C 1.50702 * 109.47384 * 270.01342 * 5 4 3 7 7 O 1.21286 * 119.99598 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00353 * 180.02562 * 6 5 4 9 9 C 1.47024 * 125.64545 * 0.02562 * 8 6 5 10 10 C 1.54333 * 107.26819 * 181.02299 * 9 8 6 11 11 H 1.08998 * 110.71848 * 263.65667 * 10 9 8 12 12 N 1.46497 * 110.71365 * 140.55799 * 10 9 8 13 13 C 1.36938 * 119.99911 * 86.45753 * 12 10 9 14 14 H 1.07999 * 120.00183 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00012 * 179.97438 * 13 12 10 16 16 N 1.31616 * 120.00017 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99899 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47126 * 89.99568 * 17 15 13 19 19 H 1.48501 * 109.47030 * 209.99314 * 17 15 13 20 20 H 1.48497 * 109.47188 * 329.99414 * 17 15 13 21 21 C 1.55156 * 102.94123 * 22.19775 * 10 9 8 22 22 H 1.09000 * 111.00736 * 82.56689 * 21 10 9 23 23 C 1.52998 * 111.00200 * 206.38563 * 21 10 9 24 24 C 1.47420 * 125.64995 * 179.71977 * 8 6 5 25 25 N 1.30709 * 108.94800 * 359.76504 * 4 3 2 26 26 N 1.34429 * 125.96217 * 179.83158 * 2 1 3 27 27 H 0.97001 * 126.82629 * 0.04437 * 26 2 1 28 28 H 1.08998 * 109.47274 * 270.16602 * 1 2 3 29 29 H 1.08997 * 109.47016 * 30.17085 * 1 2 3 30 30 H 1.09003 * 109.46808 * 150.16938 * 1 2 3 31 31 H 1.09001 * 109.47705 * 30.01842 * 5 4 3 32 32 H 1.09007 * 109.46998 * 150.01972 * 5 4 3 33 33 H 1.08994 * 109.88875 * 300.44340 * 9 8 6 34 34 H 1.08998 * 109.87904 * 61.45916 * 9 8 6 35 35 H 0.96996 * 120.00215 * 266.44767 * 12 10 9 36 36 H 0.97000 * 120.00151 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.47216 * 60.00242 * 23 21 10 38 38 H 1.09005 * 109.47213 * 179.97438 * 23 21 10 39 39 H 1.09002 * 109.46929 * 299.99701 * 23 21 10 40 40 H 1.08999 * 110.36716 * 274.74487 * 24 8 6 41 41 H 1.09005 * 110.36458 * 37.06429 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0052 5 6 4.7371 1.6237 -0.0127 6 6 5.1243 1.9327 -1.4359 7 8 4.5014 1.4423 -2.3539 8 7 6.1627 2.7538 -1.6888 9 6 7.0002 3.4129 -0.6760 10 6 8.0399 4.2700 -1.4285 11 1 8.9811 3.7305 -1.5334 12 7 8.2506 5.5482 -0.7443 13 6 9.1668 5.6393 0.2694 14 1 9.7338 4.7688 0.5647 15 6 9.3668 6.8505 0.9173 16 7 10.2471 6.9379 1.8919 17 14 8.3856 8.3559 0.4071 18 1 7.1321 8.4220 1.2005 19 1 9.1918 9.5787 0.6525 20 1 8.0531 8.2638 -1.0372 21 6 7.3723 4.4913 -2.8115 22 1 6.6597 5.3151 -2.7741 23 6 8.4245 4.7289 -3.8965 24 6 6.6507 3.1349 -3.0266 25 7 3.6195 -0.6167 -0.0035 26 7 2.2964 -1.0881 0.0032 27 1 2.0094 -2.0146 0.0053 28 1 -0.3634 0.0030 1.0276 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5112 31 1 4.4726 2.5481 0.5008 32 1 5.5768 1.1520 0.4980 33 1 6.3833 4.0500 -0.0423 34 1 7.5053 2.6628 -0.0675 35 1 7.7412 6.3299 -1.0093 36 1 10.3866 7.7842 2.3450 37 1 9.0824 3.8622 -3.9607 38 1 7.9295 4.8805 -4.8558 39 1 9.0112 5.6128 -3.6463 40 1 7.3484 2.3869 -3.4032 41 1 5.8145 3.2556 -3.7153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054639505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:13 Heat of formation + Delta-G solvation = 37.762150 kcal Electronic energy + Delta-G solvation = -23228.647642 eV Core-core repulsion = 19758.570100 eV Total energy + Delta-G solvation = -3470.077542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.21763 -41.13905 -39.03618 -35.93981 -34.77786 -33.97526 -33.39646 -32.87908 -31.01321 -29.42869 -28.76776 -27.12964 -25.60835 -23.22086 -22.51956 -21.80738 -21.56311 -20.16781 -19.48420 -18.89940 -18.26390 -17.47754 -16.86538 -16.47908 -16.30446 -15.90271 -15.46847 -14.92585 -14.81465 -14.64205 -14.54943 -14.24093 -13.92187 -13.73554 -13.64302 -13.50930 -13.17758 -13.13469 -12.90698 -12.88584 -12.76611 -12.20021 -12.13033 -11.89320 -11.76812 -11.46030 -11.31109 -11.15049 -11.03652 -10.91042 -10.50307 -9.69014 -9.33463 -7.97881 -5.32784 0.51847 1.43783 1.45484 1.50339 1.52338 1.55832 1.70657 2.10827 2.52658 2.95745 3.32208 3.33079 3.49069 3.63770 3.77278 3.84632 3.89216 4.13956 4.29016 4.34823 4.37442 4.44299 4.62167 4.66960 4.69616 4.72698 4.89943 4.93369 5.02690 5.10109 5.12286 5.19164 5.22252 5.29808 5.31379 5.49717 5.82522 6.19269 6.25570 6.42738 7.02030 7.03023 7.11119 7.85141 8.03648 9.22977 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.003502 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.235763 B = 7994.303331 C = 8720.804437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.287 3.713 3 N -0.571 5.571 4 C 0.239 3.761 5 C -0.045 4.045 6 C 0.538 3.462 7 O -0.579 6.579 8 N -0.610 5.610 9 C 0.079 3.921 10 C 0.175 3.825 11 H 0.072 0.928 12 N -0.737 5.737 13 C -0.227 4.227 14 H 0.065 0.935 15 C -0.058 4.058 16 N -0.982 5.982 17 Si 0.947 3.053 18 H -0.281 1.281 19 H -0.301 1.301 20 H -0.249 1.249 21 C -0.105 4.105 22 H 0.082 0.918 23 C -0.132 4.132 24 C 0.117 3.883 25 N -0.336 5.336 26 N -0.473 5.473 27 H 0.456 0.544 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.367 0.633 36 H 0.257 0.743 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.182 -13.835 -7.222 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.009 3.991 3 N -0.301 5.301 4 C -0.045 4.045 5 C -0.086 4.086 6 C 0.326 3.674 7 O -0.460 6.460 8 N -0.343 5.343 9 C -0.046 4.046 10 C 0.065 3.935 11 H 0.090 0.910 12 N -0.379 5.379 13 C -0.358 4.358 14 H 0.083 0.917 15 C -0.250 4.250 16 N -0.632 5.632 17 Si 0.775 3.225 18 H -0.207 1.207 19 H -0.228 1.228 20 H -0.174 1.174 21 C -0.124 4.124 22 H 0.100 0.900 23 C -0.189 4.189 24 C -0.006 4.006 25 N -0.166 5.166 26 N -0.194 5.194 27 H 0.305 0.695 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.816 -14.233 -7.528 24.013 hybrid contribution -0.353 0.515 0.291 0.689 sum -18.168 -13.718 -7.237 23.888 Atomic orbital electron populations 1.20657 0.79816 1.06464 1.06256 1.25291 0.98376 0.81900 0.93542 1.70293 1.01570 1.31567 1.26669 1.23478 0.93232 0.90037 0.97735 1.19920 0.94192 0.99583 0.94940 1.20110 0.78648 0.77635 0.90993 1.90670 1.53952 1.53461 1.47919 1.48457 1.30358 1.46059 1.09427 1.23061 0.93436 0.96597 0.91499 1.21386 0.95735 0.86268 0.90119 0.91012 1.42651 1.46829 1.07682 1.40788 1.19018 1.12954 0.96017 1.07798 0.91699 1.25410 1.00360 1.00675 0.98534 1.69867 1.39524 1.26183 1.27613 0.85537 0.78166 0.79542 0.79304 1.20725 1.22833 1.17374 1.22623 0.97948 0.96496 0.95364 0.89973 1.21612 0.97692 1.02292 0.97336 1.22369 0.98314 0.95658 0.84230 1.77851 0.98983 1.12276 1.27473 1.47843 1.03106 1.11014 1.57403 0.69512 0.86831 0.88475 0.86815 0.84889 0.84843 0.91064 0.90772 0.79865 0.93447 0.91655 0.90800 0.92861 0.90190 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.29 5.84 8.24 138.23 1.14 6.97 16 3 N -0.57 -16.59 11.19 -179.73 -2.01 -18.60 16 4 C 0.24 7.28 6.63 138.63 0.92 8.20 16 5 C -0.04 -1.24 5.52 29.10 0.16 -1.07 16 6 C 0.54 17.41 7.84 87.66 0.69 18.10 16 7 O -0.58 -22.67 16.29 -3.05 -0.05 -22.72 16 8 N -0.61 -18.10 3.32 -811.33 -2.70 -20.80 16 9 C 0.08 2.43 6.24 86.73 0.54 2.97 16 10 C 0.17 5.81 3.05 46.18 0.14 5.95 16 11 H 0.07 2.47 8.02 -2.39 -0.02 2.45 16 12 N -0.74 -30.82 4.98 -317.32 -1.58 -32.40 16 13 C -0.23 -11.87 10.46 84.03 0.88 -11.00 16 14 H 0.07 3.71 8.06 -2.91 -0.02 3.68 16 15 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 16 N -0.98 -60.56 13.97 21.65 0.30 -60.26 16 17 Si 0.95 43.35 27.74 68.60 1.90 45.25 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 21 C -0.10 -2.82 3.26 -9.32 -0.03 -2.85 16 22 H 0.08 2.27 8.00 -2.39 -0.02 2.25 16 23 C -0.13 -3.09 9.31 71.98 0.67 -2.42 16 24 C 0.12 3.12 6.38 86.93 0.55 3.67 16 25 N -0.34 -9.78 12.80 -51.33 -0.66 -10.44 16 26 N -0.47 -9.47 7.45 -50.71 -0.38 -9.85 16 27 H 0.46 5.02 8.96 -213.09 -1.91 3.11 16 28 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.13 3.18 8.14 -2.38 -0.02 3.16 16 33 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.37 14.98 5.57 -92.71 -0.52 14.46 16 36 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 37 H 0.06 1.42 8.07 -2.39 -0.02 1.40 16 38 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.97 7.99 -2.39 -0.02 1.95 16 41 H 0.07 2.02 8.03 -2.38 -0.02 2.00 16 Total: -1.00 -78.24 345.60 0.28 -77.96 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -1.43 Total: 25.96 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 6.88 Total: 25.90 kcal Atomic # 7 Polarization: -145.32 SS G_CDS: -7.02 Total: -152.34 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.90 Total: 45.25 kcal Total: -78.24 0.28 -77.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054639505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.723 kcal (2) G-P(sol) polarization free energy of solvation -78.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds