Wall clock time and date at job start Tue Mar 31 2020 03:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46940 * 2 1 4 4 C 1.50699 * 109.47282 * 180.02562 * 3 2 1 5 5 O 1.21275 * 120.00107 * 359.97438 * 4 3 2 6 6 N 1.34776 * 120.00121 * 180.02562 * 4 3 2 7 7 C 1.47020 * 125.65134 * 359.96789 * 6 4 3 8 8 C 1.54322 * 107.27273 * 178.98798 * 7 6 4 9 9 H 1.09001 * 110.71808 * 96.17377 * 8 7 6 10 10 N 1.46503 * 110.87256 * 219.37487 * 8 7 6 11 11 C 1.36940 * 119.99701 * 268.61188 * 10 8 7 12 12 H 1.07998 * 120.00344 * 0.02562 * 11 10 8 13 13 C 1.38815 * 119.99888 * 180.02562 * 11 10 8 14 14 N 1.31616 * 119.99639 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00319 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47176 * 89.99401 * 15 13 11 17 17 H 1.48493 * 109.47455 * 210.00101 * 15 13 11 18 18 H 1.48505 * 109.46761 * 330.00137 * 15 13 11 19 19 C 1.55156 * 102.94391 * 337.81125 * 8 7 6 20 20 H 1.08996 * 111.00368 * 153.61681 * 19 8 7 21 21 N 1.46502 * 111.00191 * 277.42340 * 19 8 7 22 22 C 1.35322 * 125.86299 * 84.71758 * 21 19 8 23 23 C 1.35351 * 106.16806 * 180.26356 * 22 21 19 24 24 N 1.33769 * 106.50107 * 0.02562 * 23 22 21 25 25 N 1.28629 * 108.88659 * 359.97438 * 24 23 22 26 26 C 1.47431 * 125.64842 * 180.02562 * 6 4 3 27 27 H 1.08997 * 109.47200 * 299.99810 * 1 2 3 28 28 H 1.08996 * 109.47473 * 59.99965 * 1 2 3 29 29 H 1.09001 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47200 * 240.00190 * 2 1 3 31 31 H 1.09003 * 109.47118 * 120.00046 * 2 1 3 32 32 H 1.09003 * 109.47317 * 60.00374 * 3 2 1 33 33 H 1.09003 * 109.47253 * 299.99964 * 3 2 1 34 34 H 1.09007 * 109.88039 * 59.57173 * 7 6 4 35 35 H 1.09000 * 110.01257 * 298.48340 * 7 6 4 36 36 H 0.96989 * 120.00121 * 88.61302 * 10 8 7 37 37 H 0.97003 * 119.99824 * 180.02562 * 14 13 11 38 38 H 1.07991 * 126.91601 * 0.22443 * 22 21 19 39 39 H 1.08004 * 126.74797 * 180.02562 * 23 22 21 40 40 H 1.08994 * 110.36800 * 85.23614 * 26 6 4 41 41 H 1.09000 * 110.36301 * 322.91863 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0006 6 7 4.2207 2.6098 -0.0002 7 6 3.6145 3.9492 0.0002 8 6 4.7679 4.9742 0.0266 9 1 4.9997 5.3199 -0.9808 10 7 4.4412 6.1053 0.8984 11 6 3.8292 7.2150 0.3797 12 1 3.5870 7.2563 -0.6719 13 6 3.5200 8.2870 1.2057 14 7 3.8148 8.2365 2.4875 15 14 2.6845 9.8006 0.4984 16 1 1.2109 9.6351 0.5776 17 1 3.0905 10.9989 1.2757 18 1 3.0879 9.9710 -0.9206 19 6 5.9484 4.1540 0.6106 20 1 6.9055 4.5549 0.2770 21 7 5.8828 4.1079 2.0734 22 6 5.1597 3.2305 2.8073 23 6 5.3840 3.5487 4.1036 24 7 6.2217 4.5916 4.0994 25 7 6.4983 4.8986 2.8813 26 6 5.6879 2.7550 -0.0013 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 2.9887 4.0726 0.8841 35 1 3.0158 4.0879 -0.9000 36 1 4.6584 6.0681 1.8430 37 1 3.5984 8.9854 3.0647 38 1 4.5300 2.4367 2.4339 39 1 4.9683 3.0572 4.9709 40 1 6.0729 2.7087 -1.0199 41 1 6.1461 1.9805 0.6138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070125825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:58 Heat of formation + Delta-G solvation = 63.034600 kcal Electronic energy + Delta-G solvation = -24486.130602 eV Core-core repulsion = 21017.148955 eV Total energy + Delta-G solvation = -3468.981646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.23112 -41.22147 -39.14189 -35.98774 -35.29852 -34.83661 -33.09182 -31.91807 -31.11565 -29.21748 -28.59513 -25.92878 -25.06470 -23.58607 -23.20768 -22.39617 -21.46767 -20.26859 -19.42792 -18.77618 -18.13216 -17.15649 -17.09467 -16.70129 -16.30022 -15.94297 -15.83172 -15.32420 -15.25871 -14.80178 -14.53007 -14.14176 -13.97880 -13.80528 -13.64048 -13.07004 -12.92857 -12.88785 -12.74606 -12.63714 -12.58623 -12.42990 -12.09533 -11.99916 -11.90685 -11.79045 -11.60798 -11.23165 -10.92244 -10.89237 -10.27424 -9.76917 -9.16213 -7.95852 -5.30463 0.71359 1.43741 1.48824 1.50198 1.57101 1.58570 1.69736 1.84633 2.53349 3.00003 3.25537 3.50640 3.60542 3.68990 3.72661 4.01010 4.04334 4.08293 4.13648 4.21040 4.27892 4.34576 4.45468 4.55821 4.59144 4.69189 4.76410 4.83647 4.89041 4.92199 5.02900 5.12315 5.23190 5.28185 5.29136 5.47849 5.50716 5.72856 6.20059 6.38532 7.07270 7.29164 7.61213 7.97683 8.18943 9.25603 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.005596 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.898239 B = 5002.094999 C = 6211.982491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.529 3.471 5 O -0.576 6.576 6 N -0.615 5.615 7 C 0.085 3.915 8 C 0.157 3.843 9 H 0.113 0.887 10 N -0.727 5.727 11 C -0.249 4.249 12 H 0.093 0.907 13 C -0.069 4.069 14 N -0.965 5.965 15 Si 0.973 3.027 16 H -0.287 1.287 17 H -0.305 1.305 18 H -0.262 1.262 19 C 0.107 3.893 20 H 0.145 0.855 21 N -0.263 5.263 22 C -0.038 4.038 23 C -0.065 4.065 24 N -0.310 5.310 25 N -0.106 5.106 26 C 0.112 3.888 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.378 0.622 37 H 0.249 0.751 38 H 0.195 0.805 39 H 0.214 0.786 40 H 0.129 0.871 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -15.602 -8.111 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.174 4.174 4 C 0.320 3.680 5 O -0.456 6.456 6 N -0.349 5.349 7 C -0.041 4.041 8 C 0.045 3.955 9 H 0.131 0.869 10 N -0.366 5.366 11 C -0.380 4.380 12 H 0.111 0.889 13 C -0.262 4.262 14 N -0.614 5.614 15 Si 0.802 3.198 16 H -0.214 1.214 17 H -0.233 1.233 18 H -0.186 1.186 19 C 0.004 3.996 20 H 0.163 0.837 21 N -0.057 5.057 22 C -0.189 4.189 23 C -0.222 4.222 24 N -0.175 5.175 25 N -0.085 5.085 26 C -0.012 4.012 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.212 0.788 37 H 0.057 0.943 38 H 0.212 0.788 39 H 0.231 0.769 40 H 0.146 0.854 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.202 -14.851 -8.121 17.069 hybrid contribution -1.045 0.319 0.400 1.164 sum -3.247 -14.531 -7.720 16.772 Atomic orbital electron populations 1.21767 0.94010 1.02453 1.02458 1.21241 0.96486 0.94132 1.02417 1.21773 0.89267 1.00548 1.05827 1.20930 0.91178 0.81251 0.74640 1.90690 1.71370 1.31499 1.52020 1.48634 1.06915 1.06242 1.73133 1.23043 0.97942 0.80435 1.02703 1.21892 0.90388 0.86979 0.96261 0.86934 1.42594 1.70997 1.14558 1.08500 1.19679 1.30214 0.93691 0.94443 0.88908 1.25640 1.02920 1.01815 0.95825 1.69893 1.53844 1.32538 1.05079 0.85157 0.77973 0.78785 0.77863 1.21364 1.23257 1.18639 1.23588 1.04055 0.99150 0.72857 0.83699 1.47376 1.29440 1.19884 1.08986 1.23731 1.03014 1.00326 0.91863 1.24103 1.01823 0.97848 0.98463 1.75038 1.16201 1.14171 1.12040 1.78325 1.19309 1.15687 0.95133 1.22544 0.82147 0.93069 1.03417 0.92329 0.91892 0.91855 0.92130 0.92495 0.88124 0.87138 0.92495 0.88871 0.78843 0.94251 0.78785 0.76938 0.85356 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.32 16 2 C -0.10 -1.84 5.22 30.59 0.16 -1.68 16 3 C -0.13 -2.42 4.89 29.85 0.15 -2.28 16 4 C 0.53 12.38 7.61 87.66 0.67 13.05 16 5 O -0.58 -17.04 16.24 -3.01 -0.05 -17.09 16 6 N -0.61 -13.70 2.17 -811.81 -1.76 -15.46 16 7 C 0.08 2.16 5.86 86.73 0.51 2.67 16 8 C 0.16 4.84 3.48 46.18 0.16 5.00 16 9 H 0.11 3.06 8.09 -2.39 -0.02 3.04 16 10 N -0.73 -32.83 5.12 -317.32 -1.63 -34.46 16 11 C -0.25 -12.46 9.96 84.03 0.84 -11.62 16 12 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 13 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 14 N -0.96 -58.85 13.06 21.65 0.28 -58.57 16 15 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 16 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 C 0.11 2.89 4.05 46.38 0.19 3.07 16 20 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 21 N -0.26 -8.94 2.44 -320.60 -0.78 -9.72 16 22 C -0.04 -1.17 10.01 83.49 0.84 -0.34 16 23 C -0.06 -2.17 12.05 83.73 1.01 -1.16 16 24 N -0.31 -13.07 12.41 -58.25 -0.72 -13.79 16 25 N -0.11 -4.48 12.27 37.02 0.45 -4.03 16 26 C 0.11 2.33 5.89 86.85 0.51 2.84 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 31 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.74 8.03 -2.38 -0.02 1.72 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.38 19.58 6.00 -92.72 -0.56 19.02 16 37 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.20 5.13 6.79 -2.92 -0.02 5.11 16 39 H 0.21 5.35 8.06 -2.91 -0.02 5.32 16 40 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.09 1.91 7.77 -2.39 -0.02 1.90 16 Total: -1.00 -72.81 341.22 4.50 -68.30 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.48 Total: 33.87 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 6.20 Total: 4.94 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -4.15 Total: -136.04 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.05 Total: -17.09 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.81 4.50 -68.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070125825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.338 kcal (2) G-P(sol) polarization free energy of solvation -72.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds