Wall clock time and date at job start Tue Mar 31 2020 03:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.70932 * 2 1 4 4 C 1.53194 * 109.58287 * 239.64238 * 2 1 3 5 5 C 1.53041 * 109.33823 * 185.59554 * 4 2 1 6 6 C 1.53035 * 109.53849 * 61.32142 * 5 4 2 7 7 H 1.09002 * 109.50147 * 58.65072 * 6 5 4 8 8 N 1.46503 * 109.49998 * 178.71699 * 6 5 4 9 9 C 1.34777 * 120.00237 * 204.93696 * 8 6 5 10 10 O 1.21598 * 120.00053 * 359.97438 * 9 8 6 11 11 C 1.47523 * 120.00406 * 179.97438 * 9 8 6 12 12 C 1.36593 * 125.77465 * 180.23635 * 11 9 8 13 13 N 1.34809 * 106.83981 * 180.13538 * 12 11 9 14 14 C 1.46504 * 126.59348 * 179.91232 * 13 12 11 15 15 N 1.40208 * 106.81339 * 359.64542 * 13 12 11 16 16 N 1.28761 * 108.36605 * 0.22617 * 15 13 12 17 17 C 1.53191 * 109.34087 * 298.68135 * 6 5 4 18 18 N 1.46930 * 108.77550 * 54.61822 * 17 6 5 19 19 C 1.36936 * 120.62971 * 126.37129 * 18 17 6 20 20 H 1.08006 * 119.99636 * 221.18706 * 19 18 17 21 21 C 1.38809 * 120.00221 * 41.18981 * 19 18 17 22 22 N 1.31617 * 119.99877 * 214.83776 * 21 19 18 23 23 Si 1.86798 * 119.99920 * 34.83217 * 21 19 18 24 24 H 1.48500 * 109.47127 * 84.63164 * 23 21 19 25 25 H 1.48500 * 109.47336 * 204.63280 * 23 21 19 26 26 H 1.48503 * 109.47589 * 324.63080 * 23 21 19 27 27 H 1.09001 * 109.46799 * 299.64546 * 1 2 3 28 28 H 1.09002 * 109.47293 * 59.64301 * 1 2 3 29 29 H 1.08998 * 109.47606 * 179.64809 * 1 2 3 30 30 H 1.08996 * 109.50044 * 305.53022 * 4 2 1 31 31 H 1.08995 * 109.49792 * 65.59985 * 4 2 1 32 32 H 1.08995 * 109.43854 * 301.31120 * 5 4 2 33 33 H 1.09005 * 109.48648 * 181.35211 * 5 4 2 34 34 H 0.96998 * 119.99677 * 24.92979 * 8 6 5 35 35 H 1.08003 * 126.57589 * 0.02562 * 12 11 9 36 36 H 1.08999 * 109.46901 * 269.70607 * 14 13 12 37 37 H 1.08998 * 109.47394 * 29.71006 * 14 13 12 38 38 H 1.08997 * 109.47265 * 149.71053 * 14 13 12 39 39 H 1.08992 * 109.59371 * 174.40715 * 17 6 5 40 40 H 1.09002 * 109.58776 * 294.69124 * 17 6 5 41 41 H 0.97003 * 119.99942 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7295 -1.2454 5 6 3.5673 -0.8488 -1.1706 6 6 3.9567 -1.6659 0.0633 7 1 3.4985 -2.6533 0.0054 8 7 5.4141 -1.8056 0.1174 9 6 5.9675 -2.8475 0.7692 10 8 5.2572 -3.6713 1.3127 11 6 7.4350 -2.9885 0.8232 12 6 8.1181 -3.9953 1.4439 13 7 9.4305 -3.7483 1.2597 14 6 10.5488 -4.5584 1.7490 15 7 9.5194 -2.5704 0.5044 16 7 8.3258 -2.1506 0.2655 17 6 3.4650 -0.9472 1.3237 18 7 2.0225 -0.6997 1.1945 19 6 1.1536 -1.1136 2.1686 20 1 0.2055 -1.5528 1.8953 21 6 1.4913 -0.9685 3.5071 22 7 1.1095 -1.8729 4.3838 23 14 2.4876 0.5101 4.0641 24 1 1.5767 1.6571 4.3086 25 1 3.2106 0.1762 5.3175 26 1 3.4677 0.8726 3.0090 27 1 -0.3633 0.5083 0.8932 28 1 -0.3634 0.5194 -0.8868 29 1 -0.3634 -1.0276 -0.0063 30 1 1.6028 -1.7253 -1.2913 31 1 1.7654 -0.1672 -2.1368 32 1 4.0061 0.1464 -1.1004 33 1 3.9375 -1.3463 -2.0671 34 1 5.9807 -1.1483 -0.3159 35 1 7.6891 -4.8284 1.9810 36 1 10.8479 -4.2062 2.7362 37 1 10.2407 -5.6019 1.8135 38 1 11.3899 -4.4697 1.0615 39 1 3.6517 -1.5719 2.1970 40 1 3.9921 0.0006 1.4330 41 1 1.3451 -1.7714 5.3193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071467267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:58 Heat of formation + Delta-G solvation = 85.230340 kcal Electronic energy + Delta-G solvation = -23921.860813 eV Core-core repulsion = 20453.841646 eV Total energy + Delta-G solvation = -3468.019167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28060 -39.36509 -37.65512 -34.88270 -34.41873 -32.71420 -31.32316 -30.65366 -30.38445 -28.10602 -26.15613 -24.89305 -23.45183 -22.41501 -22.30830 -20.78302 -20.15879 -19.34784 -18.04257 -16.51141 -16.35195 -16.20521 -15.82300 -14.99364 -14.69991 -14.51118 -14.29478 -13.91041 -13.77152 -13.47469 -13.39943 -13.30277 -12.84349 -12.37582 -12.26224 -11.99091 -11.71789 -11.41476 -11.38991 -11.12620 -10.69737 -10.56766 -10.56113 -10.43245 -10.20488 -10.00832 -9.75629 -9.65782 -9.43504 -9.37984 -8.67574 -8.23717 -6.62689 -6.00362 -3.30397 1.00990 1.72000 1.86164 3.36344 3.47245 3.51602 3.56402 3.61966 4.13600 4.17293 4.61256 4.65402 4.70067 4.87901 4.90121 5.07352 5.20250 5.27470 5.34628 5.51729 5.60233 5.72145 5.88476 6.06703 6.14408 6.17262 6.24664 6.36487 6.39330 6.45887 6.59681 6.67505 6.74533 6.86698 7.05273 7.13052 7.21518 7.68533 7.94344 8.10963 8.49331 8.52050 9.07916 9.80543 10.28675 11.15025 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.004587 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.152773 B = 6102.589426 C = 7002.097211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 H 0.027 0.973 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.124 3.876 7 H 0.092 0.908 8 N -0.708 5.708 9 C 0.597 3.403 10 O -0.527 6.527 11 C -0.094 4.094 12 C 0.092 3.908 13 N -0.367 5.367 14 C 0.089 3.911 15 N -0.072 5.072 16 N -0.205 5.205 17 C 0.139 3.861 18 N -0.590 5.590 19 C -0.275 4.275 20 H 0.077 0.923 21 C 0.054 3.946 22 N -0.876 5.876 23 Si 0.841 3.159 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.261 1.261 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.401 0.599 35 H 0.206 0.794 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.024 0.976 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.961 -3.741 -8.882 18.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.019 3.981 7 H 0.110 0.890 8 N -0.358 5.358 9 C 0.380 3.620 10 O -0.401 6.401 11 C -0.234 4.234 12 C -0.065 4.065 13 N -0.152 5.152 14 C -0.052 4.052 15 N -0.052 5.052 16 N -0.079 5.079 17 C 0.012 3.988 18 N -0.315 5.315 19 C -0.403 4.403 20 H 0.095 0.905 21 C -0.150 4.150 22 N -0.514 5.514 23 Si 0.668 3.332 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.186 1.186 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.236 0.764 35 H 0.223 0.777 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.368 -3.441 -8.941 18.965 hybrid contribution 0.492 0.371 0.924 1.111 sum 16.859 -3.070 -8.017 18.919 Atomic orbital electron populations 1.21759 0.95344 1.01811 1.00205 1.20624 0.93663 0.93324 0.86827 0.95564 1.22018 0.94055 1.01609 0.98818 1.21682 0.97510 0.99692 0.96623 1.21884 0.77399 1.01326 0.97512 0.89037 1.45928 1.08635 1.26480 1.54763 1.16763 0.84015 0.82091 0.79161 1.90885 1.61382 1.42419 1.45463 1.21677 0.95958 0.97052 1.08695 1.23427 0.83345 1.00807 0.98921 1.50345 1.06533 1.20402 1.37946 1.22175 0.87359 0.94400 1.01314 1.81958 1.14839 0.96179 1.12250 1.74608 0.96482 1.21939 1.14905 1.21632 0.85107 0.96573 0.95438 1.44279 1.01926 1.65039 1.20225 1.18559 1.02097 1.35392 0.84268 0.90514 1.25568 0.96584 0.96825 0.95979 1.70096 1.46956 1.31142 1.03245 0.87391 0.80781 0.86990 0.78070 1.21522 1.22498 1.18612 0.91831 0.94352 0.92490 0.91699 0.92391 0.92112 0.92504 0.76425 0.77681 0.89241 0.88373 0.88201 0.91023 0.95789 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.07 37.15 0.30 -2.20 16 2 C 0.16 3.19 3.50 -67.60 -0.24 2.95 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.06 5.37 -26.61 -0.14 -2.20 16 5 C -0.12 -1.83 5.36 -26.69 -0.14 -1.97 16 6 C 0.12 2.33 2.60 -67.81 -0.18 2.15 16 7 H 0.09 1.94 7.58 -51.93 -0.39 1.55 16 8 N -0.71 -11.82 5.08 -54.73 -0.28 -12.10 16 9 C 0.60 10.53 7.78 -12.48 -0.10 10.43 16 10 O -0.53 -11.11 16.53 5.28 0.09 -11.02 16 11 C -0.09 -1.39 6.99 -83.55 -0.58 -1.97 16 12 C 0.09 1.04 11.31 -16.84 -0.19 0.84 16 13 N -0.37 -3.61 4.03 -67.86 -0.27 -3.88 16 14 C 0.09 0.37 11.51 59.85 0.69 1.06 16 15 N -0.07 -0.95 13.78 60.35 0.83 -0.11 16 16 N -0.21 -3.03 12.04 32.85 0.40 -2.63 16 17 C 0.14 3.18 4.17 -3.71 -0.02 3.17 16 18 N -0.59 -14.15 2.47 -164.78 -0.41 -14.55 16 19 C -0.28 -7.67 8.42 -15.06 -0.13 -7.79 16 20 H 0.08 2.27 6.83 -52.48 -0.36 1.91 16 21 C 0.05 1.56 4.82 -17.43 -0.08 1.48 16 22 N -0.88 -26.96 13.97 55.49 0.78 -26.19 16 23 Si 0.84 22.10 27.39 -169.99 -4.66 17.44 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 26 H -0.26 -6.65 5.24 56.52 0.30 -6.36 16 27 H 0.06 1.29 7.68 -51.93 -0.40 0.90 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.11 7.42 -51.93 -0.39 0.73 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 5.81 8.29 -40.82 -0.34 5.47 16 35 H 0.21 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 1.89 7.01 -51.93 -0.36 1.52 16 40 H 0.02 0.55 6.71 -51.93 -0.35 0.21 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -35.24 335.81 -5.33 -40.56 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.06 Total: 1.48 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -0.81 Total: 5.94 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 1.04 Total: -59.47 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.66 Total: 17.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.24 -5.33 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071467267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.794 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds