Wall clock time and date at job start Tue Mar 31 2020 03:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.70932 * 2 1 4 4 C 1.53194 * 109.58287 * 239.64238 * 2 1 3 5 5 C 1.53041 * 109.33823 * 185.59554 * 4 2 1 6 6 C 1.53035 * 109.53849 * 61.32142 * 5 4 2 7 7 H 1.09002 * 109.50147 * 58.65072 * 6 5 4 8 8 N 1.46503 * 109.49998 * 178.71699 * 6 5 4 9 9 C 1.34777 * 120.00237 * 204.93696 * 8 6 5 10 10 O 1.21598 * 120.00053 * 359.97438 * 9 8 6 11 11 C 1.47523 * 120.00406 * 179.97438 * 9 8 6 12 12 C 1.36593 * 125.77465 * 180.23635 * 11 9 8 13 13 N 1.34809 * 106.83981 * 180.13538 * 12 11 9 14 14 C 1.46504 * 126.59348 * 179.91232 * 13 12 11 15 15 N 1.40208 * 106.81339 * 359.64542 * 13 12 11 16 16 N 1.28761 * 108.36605 * 0.22617 * 15 13 12 17 17 C 1.53191 * 109.34087 * 298.68135 * 6 5 4 18 18 N 1.46930 * 108.77550 * 54.61822 * 17 6 5 19 19 C 1.36936 * 120.62971 * 126.37129 * 18 17 6 20 20 H 1.08006 * 119.99636 * 221.18706 * 19 18 17 21 21 C 1.38809 * 120.00221 * 41.18981 * 19 18 17 22 22 N 1.31617 * 119.99877 * 214.83776 * 21 19 18 23 23 Si 1.86798 * 119.99920 * 34.83217 * 21 19 18 24 24 H 1.48500 * 109.47127 * 84.63164 * 23 21 19 25 25 H 1.48500 * 109.47336 * 204.63280 * 23 21 19 26 26 H 1.48503 * 109.47589 * 324.63080 * 23 21 19 27 27 H 1.09001 * 109.46799 * 299.64546 * 1 2 3 28 28 H 1.09002 * 109.47293 * 59.64301 * 1 2 3 29 29 H 1.08998 * 109.47606 * 179.64809 * 1 2 3 30 30 H 1.08996 * 109.50044 * 305.53022 * 4 2 1 31 31 H 1.08995 * 109.49792 * 65.59985 * 4 2 1 32 32 H 1.08995 * 109.43854 * 301.31120 * 5 4 2 33 33 H 1.09005 * 109.48648 * 181.35211 * 5 4 2 34 34 H 0.96998 * 119.99677 * 24.92979 * 8 6 5 35 35 H 1.08003 * 126.57589 * 0.02562 * 12 11 9 36 36 H 1.08999 * 109.46901 * 269.70607 * 14 13 12 37 37 H 1.08998 * 109.47394 * 29.71006 * 14 13 12 38 38 H 1.08997 * 109.47265 * 149.71053 * 14 13 12 39 39 H 1.08992 * 109.59371 * 174.40715 * 17 6 5 40 40 H 1.09002 * 109.58776 * 294.69124 * 17 6 5 41 41 H 0.97003 * 119.99942 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0434 -0.7295 -1.2454 5 6 3.5673 -0.8488 -1.1706 6 6 3.9567 -1.6659 0.0633 7 1 3.4985 -2.6533 0.0054 8 7 5.4141 -1.8056 0.1174 9 6 5.9675 -2.8475 0.7692 10 8 5.2572 -3.6713 1.3127 11 6 7.4350 -2.9885 0.8232 12 6 8.1181 -3.9953 1.4439 13 7 9.4305 -3.7483 1.2597 14 6 10.5488 -4.5584 1.7490 15 7 9.5194 -2.5704 0.5044 16 7 8.3258 -2.1506 0.2655 17 6 3.4650 -0.9472 1.3237 18 7 2.0225 -0.6997 1.1945 19 6 1.1536 -1.1136 2.1686 20 1 0.2055 -1.5528 1.8953 21 6 1.4913 -0.9685 3.5071 22 7 1.1095 -1.8729 4.3838 23 14 2.4876 0.5101 4.0641 24 1 1.5767 1.6571 4.3086 25 1 3.2106 0.1762 5.3175 26 1 3.4677 0.8726 3.0090 27 1 -0.3633 0.5083 0.8932 28 1 -0.3634 0.5194 -0.8868 29 1 -0.3634 -1.0276 -0.0063 30 1 1.6028 -1.7253 -1.2913 31 1 1.7654 -0.1672 -2.1368 32 1 4.0061 0.1464 -1.1004 33 1 3.9375 -1.3463 -2.0671 34 1 5.9807 -1.1483 -0.3159 35 1 7.6891 -4.8284 1.9810 36 1 10.8479 -4.2062 2.7362 37 1 10.2407 -5.6019 1.8135 38 1 11.3899 -4.4697 1.0615 39 1 3.6517 -1.5719 2.1970 40 1 3.9921 0.0006 1.4330 41 1 1.3451 -1.7714 5.3193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071467267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:57 Heat of formation + Delta-G solvation = 57.979740 kcal Electronic energy + Delta-G solvation = -23923.042487 eV Core-core repulsion = 20453.841646 eV Total energy + Delta-G solvation = -3469.200841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.23868 -40.81829 -39.24332 -36.10849 -35.58223 -34.60970 -32.60507 -32.51865 -31.62196 -28.80277 -27.77479 -26.64702 -24.77197 -24.00332 -23.19402 -22.19894 -21.55114 -20.96449 -19.16535 -18.43040 -17.49253 -17.26980 -17.11761 -16.58986 -16.34872 -15.70744 -15.65310 -15.41753 -15.13530 -14.99091 -14.56634 -14.42746 -14.06747 -13.98253 -13.70812 -13.37454 -13.17603 -12.94720 -12.73511 -12.60275 -12.46120 -12.32151 -12.08489 -11.81351 -11.65235 -11.48705 -11.34523 -11.23977 -11.12230 -10.54568 -10.42623 -10.07090 -8.59952 -8.25530 -5.50421 0.11639 0.57870 1.14561 1.33802 1.38965 1.47575 2.07101 2.23299 2.47311 2.94868 3.16551 3.42717 3.53852 3.84452 3.91320 3.95912 4.08075 4.18839 4.34757 4.36651 4.45234 4.51490 4.67113 4.68471 4.73546 4.76448 4.89071 5.00939 5.04764 5.09334 5.15988 5.21908 5.30123 5.42171 5.46613 5.57472 5.69149 5.95520 6.28643 6.44359 6.87163 7.02904 7.17658 7.68521 8.18274 8.94564 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.004587 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.152773 B = 6102.589426 C = 7002.097211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.151 3.849 3 H 0.040 0.960 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.136 3.864 7 H 0.062 0.938 8 N -0.700 5.700 9 C 0.596 3.404 10 O -0.571 6.571 11 C -0.124 4.124 12 C 0.107 3.893 13 N -0.350 5.350 14 C 0.074 3.926 15 N -0.088 5.088 16 N -0.222 5.222 17 C 0.143 3.857 18 N -0.604 5.604 19 C -0.257 4.257 20 H 0.048 0.952 21 C -0.001 4.001 22 N -0.926 5.926 23 Si 0.898 3.102 24 H -0.285 1.285 25 H -0.306 1.306 26 H -0.248 1.248 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.415 0.585 35 H 0.233 0.767 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.026 0.974 40 H 0.028 0.972 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.311 -2.929 -11.010 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.046 3.954 3 H 0.057 0.943 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.030 3.970 7 H 0.080 0.920 8 N -0.350 5.350 9 C 0.381 3.619 10 O -0.449 6.449 11 C -0.264 4.264 12 C -0.052 4.052 13 N -0.135 5.135 14 C -0.064 4.064 15 N -0.069 5.069 16 N -0.095 5.095 17 C 0.017 3.983 18 N -0.330 5.330 19 C -0.387 4.387 20 H 0.066 0.934 21 C -0.200 4.200 22 N -0.568 5.568 23 Si 0.725 3.275 24 H -0.212 1.212 25 H -0.233 1.233 26 H -0.172 1.172 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.252 0.748 35 H 0.249 0.751 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.132 0.868 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.788 -2.582 -11.127 21.988 hybrid contribution -0.165 0.011 1.555 1.564 sum 18.622 -2.571 -9.572 21.096 Atomic orbital electron populations 1.21704 0.94867 1.00934 1.01045 1.20952 0.94275 0.93895 0.86248 0.94266 1.21939 0.94344 1.01007 0.98392 1.21670 0.97074 1.00235 0.95684 1.21502 0.78459 0.99816 0.97241 0.91993 1.45784 1.07873 1.26747 1.54613 1.17155 0.85252 0.81436 0.78032 1.90858 1.62817 1.43968 1.47298 1.21398 0.94492 0.99111 1.11385 1.23803 0.83666 1.00245 0.97441 1.50700 1.07291 1.19381 1.36081 1.22746 0.86142 0.95289 1.02241 1.81858 1.14210 0.97656 1.13174 1.74565 0.96821 1.22555 1.15583 1.21489 0.84804 0.96133 0.95899 1.44442 1.01850 1.65940 1.20732 1.18495 1.01439 1.33570 0.85195 0.93396 1.26078 0.98685 0.98836 0.96352 1.70189 1.50179 1.32976 1.03454 0.86470 0.79688 0.83835 0.77510 1.21202 1.23346 1.17240 0.94325 0.90072 0.94293 0.93020 0.88237 0.90258 0.89502 0.74825 0.75092 0.87560 0.85285 0.86840 0.95578 0.95442 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.07 71.98 0.58 -4.06 16 2 C 0.15 5.67 3.50 44.97 0.16 5.83 16 3 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.12 -3.48 5.37 30.67 0.16 -3.31 16 5 C -0.11 -3.04 5.36 30.62 0.16 -2.87 16 6 C 0.14 5.04 2.60 45.07 0.12 5.15 16 7 H 0.06 2.69 7.58 -2.39 -0.02 2.67 16 8 N -0.70 -22.93 5.08 -445.34 -2.26 -25.19 16 9 C 0.60 21.19 7.78 86.69 0.67 21.86 16 10 O -0.57 -24.91 16.53 -4.02 -0.07 -24.97 16 11 C -0.12 -3.56 6.99 40.81 0.29 -3.28 16 12 C 0.11 2.22 11.31 83.85 0.95 3.17 16 13 N -0.35 -6.00 4.03 -368.59 -1.49 -7.49 16 14 C 0.07 0.36 11.51 127.77 1.47 1.83 16 15 N -0.09 -2.18 13.78 37.02 0.51 -1.67 16 16 N -0.22 -6.28 12.04 -49.99 -0.60 -6.88 16 17 C 0.14 6.59 4.17 86.36 0.36 6.95 16 18 N -0.60 -29.13 2.47 -675.23 -1.67 -30.80 16 19 C -0.26 -14.85 8.42 84.03 0.71 -14.15 16 20 H 0.05 3.00 6.83 -2.91 -0.02 2.98 16 21 C 0.00 -0.04 4.82 84.86 0.41 0.37 16 22 N -0.93 -59.71 13.97 21.65 0.30 -59.40 16 23 Si 0.90 47.01 27.39 68.60 1.88 48.89 16 24 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 25 H -0.31 -16.30 7.11 99.48 0.71 -15.60 16 26 H -0.25 -12.27 5.24 99.48 0.52 -11.75 16 27 H 0.04 1.56 7.68 -2.39 -0.02 1.54 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.04 1.52 7.42 -2.39 -0.02 1.50 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.41 11.36 8.29 -92.71 -0.77 10.59 16 35 H 0.23 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.03 1.41 7.01 -2.39 -0.02 1.40 16 40 H 0.03 1.24 6.71 -2.39 -0.02 1.23 16 41 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -81.69 335.81 2.74 -78.95 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.09 Total: 11.08 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 6.04 Total: 17.49 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -5.20 Total: -131.43 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.07 Total: -24.97 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.88 Total: 48.89 kcal Total: -81.69 2.74 -78.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071467267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.928 kcal (2) G-P(sol) polarization free energy of solvation -81.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds