Wall clock time and date at job start Tue Mar 31 2020 03:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.58904 * 2 1 4 4 C 1.53185 * 109.58578 * 120.43067 * 2 1 3 5 5 C 1.53037 * 109.31322 * 174.42079 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.63362 * 5 4 2 7 7 H 1.09003 * 109.50169 * 301.40859 * 6 5 4 8 8 N 1.46501 * 109.52694 * 181.33195 * 6 5 4 9 9 C 1.34773 * 120.00276 * 155.14579 * 8 6 5 10 10 O 1.21589 * 120.00302 * 359.97438 * 9 8 6 11 11 C 1.47524 * 120.00079 * 179.97438 * 9 8 6 12 12 C 1.36599 * 125.77170 * 179.97438 * 11 9 8 13 13 N 1.34811 * 106.83923 * 179.97438 * 12 11 9 14 14 C 1.46501 * 126.59403 * 179.97438 * 13 12 11 15 15 N 1.40210 * 106.81489 * 0.02562 * 13 12 11 16 16 N 1.28759 * 108.36416 * 359.74829 * 15 13 12 17 17 C 1.53191 * 109.31401 * 61.36385 * 6 5 4 18 18 N 1.46923 * 108.77672 * 305.36978 * 17 6 5 19 19 C 1.36936 * 120.62934 * 233.59047 * 18 17 6 20 20 H 1.07995 * 120.00547 * 149.22205 * 19 18 17 21 21 C 1.38822 * 119.99709 * 329.21595 * 19 18 17 22 22 N 1.31620 * 119.99894 * 346.00001 * 21 19 18 23 23 Si 1.86801 * 119.99668 * 165.99941 * 21 19 18 24 24 H 1.48494 * 109.47391 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46889 * 120.00367 * 23 21 19 26 26 H 1.48491 * 109.47167 * 239.99841 * 23 21 19 27 27 H 1.09000 * 109.46870 * 180.28025 * 1 2 3 28 28 H 1.08992 * 109.47013 * 300.28332 * 1 2 3 29 29 H 1.08997 * 109.46833 * 60.28132 * 1 2 3 30 30 H 1.09004 * 109.49961 * 294.37500 * 4 2 1 31 31 H 1.09005 * 109.50106 * 54.46724 * 4 2 1 32 32 H 1.09005 * 109.45981 * 178.61036 * 5 4 2 33 33 H 1.08999 * 109.46060 * 58.65346 * 5 4 2 34 34 H 0.97008 * 120.00080 * 335.14842 * 8 6 5 35 35 H 1.07996 * 126.58166 * 359.96076 * 12 11 9 36 36 H 1.09001 * 109.47082 * 89.99826 * 14 13 12 37 37 H 1.09005 * 109.47447 * 210.00023 * 14 13 12 38 38 H 1.08999 * 109.47146 * 330.00006 * 14 13 12 39 39 H 1.08998 * 109.58839 * 185.57402 * 17 6 5 40 40 H 1.09005 * 109.58192 * 65.15315 * 17 6 5 41 41 H 0.96997 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6529 -0.0087 8 7 5.4141 -1.8060 -0.1202 9 6 5.9669 -2.8465 -0.7745 10 8 5.2563 -3.6692 -1.3190 11 6 7.4344 -2.9874 -0.8299 12 6 8.1171 -3.9910 -1.4567 13 7 9.4296 -3.7465 -1.2696 14 6 10.5474 -4.5558 -1.7612 15 7 9.5191 -2.5695 -0.5130 16 7 8.3258 -2.1475 -0.2765 17 6 3.4650 -0.9453 -1.3250 18 7 2.0226 -0.6980 -1.1954 19 6 1.1538 -1.1099 -2.1704 20 1 0.1443 -1.3920 -1.9102 21 6 1.5706 -1.1649 -3.4934 22 7 2.6879 -0.5715 -3.8566 23 14 0.5458 -2.0812 -4.7582 24 1 -0.6549 -2.6559 -4.1000 25 1 0.1218 -1.1411 -5.8267 26 1 1.3555 -3.1744 -5.3534 27 1 -0.3633 -1.0277 0.0050 28 1 -0.3633 0.5182 0.8874 29 1 -0.3633 0.5095 -0.8925 30 1 1.7660 -0.1696 2.1366 31 1 1.6029 -1.7270 1.2891 32 1 3.9378 -1.3475 2.0652 33 1 4.0061 0.1459 1.0994 34 1 5.9812 -1.1499 0.3145 35 1 7.6878 -4.8210 -1.9980 36 1 10.8449 -4.2028 -2.7486 37 1 11.3896 -4.4674 -1.0748 38 1 10.2396 -5.5994 -1.8260 39 1 3.6519 -1.5690 -2.1992 40 1 3.9904 0.0038 -1.4317 41 1 2.9793 -0.6103 -4.7809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071467268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:00 Heat of formation + Delta-G solvation = 82.047104 kcal Electronic energy + Delta-G solvation = -23905.751845 eV Core-core repulsion = 20437.594643 eV Total energy + Delta-G solvation = -3468.157202 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.18752 -39.18781 -37.46887 -34.79456 -34.28269 -32.74076 -31.22216 -30.37331 -29.76601 -28.02232 -25.99142 -24.96784 -23.33372 -22.26708 -22.15237 -20.70534 -19.94821 -19.25763 -17.90705 -16.41229 -16.27570 -16.07128 -15.60101 -15.03441 -14.59574 -14.31836 -14.01771 -13.75277 -13.66342 -13.41251 -13.30001 -13.20242 -12.65842 -12.32175 -12.17594 -11.80707 -11.39697 -11.30823 -11.05462 -10.83430 -10.68655 -10.48396 -10.45137 -10.34108 -10.19029 -9.91429 -9.80749 -9.44572 -9.38682 -9.27736 -8.45060 -8.35983 -6.52616 -5.68272 -3.14519 1.09434 1.83004 1.94157 3.43984 3.51113 3.52521 3.54026 3.66586 4.20843 4.26619 4.57925 4.66763 4.80195 4.94126 5.00883 5.28097 5.42663 5.44405 5.54714 5.64158 5.74226 5.84549 6.04436 6.20130 6.22539 6.34471 6.37926 6.46248 6.51951 6.57831 6.70382 6.82485 7.01170 7.11498 7.19814 7.39587 7.80803 7.81920 7.92104 8.08303 8.56694 8.65349 9.30763 9.94629 10.51163 11.39717 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.004545 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.306503 B = 6158.784858 C = 7430.966921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.117 3.883 7 H 0.083 0.917 8 N -0.703 5.703 9 C 0.599 3.401 10 O -0.532 6.532 11 C -0.091 4.091 12 C 0.090 3.910 13 N -0.368 5.368 14 C 0.089 3.911 15 N -0.073 5.073 16 N -0.205 5.205 17 C 0.169 3.831 18 N -0.584 5.584 19 C -0.251 4.251 20 H 0.070 0.930 21 C 0.007 3.993 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.289 1.289 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.400 0.600 35 H 0.205 0.795 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.018 0.982 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.631 -6.380 7.482 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.101 0.899 8 N -0.352 5.352 9 C 0.381 3.619 10 O -0.407 6.407 11 C -0.230 4.230 12 C -0.067 4.067 13 N -0.153 5.153 14 C -0.052 4.052 15 N -0.053 5.053 16 N -0.079 5.079 17 C 0.042 3.958 18 N -0.307 5.307 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.216 1.216 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.222 0.778 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.036 0.964 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.125 -5.979 7.559 16.283 hybrid contribution -0.484 -0.933 -1.148 1.556 sum 12.641 -6.912 6.412 15.770 Atomic orbital electron populations 1.21799 0.96038 1.01339 1.00181 1.20500 0.93028 0.93609 0.87081 0.95710 1.22039 0.94295 1.01285 0.98888 1.21680 0.97332 0.99805 0.96680 1.22046 0.77335 1.01006 0.98448 0.89853 1.45871 1.08720 1.26350 1.54301 1.16706 0.83897 0.82130 0.79137 1.90845 1.61404 1.42767 1.45714 1.21712 0.96044 0.96876 1.08413 1.23397 0.83343 1.00939 0.99012 1.50332 1.06494 1.20584 1.37926 1.22157 0.87411 0.94379 1.01255 1.81951 1.14923 0.96068 1.12377 1.74607 0.96452 1.21760 1.15035 1.21073 0.83564 0.96951 0.94208 1.44024 1.02623 1.64860 1.19215 1.19173 0.95429 1.37717 0.85783 0.91254 1.25124 0.97707 0.99263 0.97141 1.70012 1.23661 1.44213 1.16537 0.86264 0.79726 0.79416 0.81625 1.20201 1.21845 1.21575 0.92836 0.94384 0.92007 0.92675 0.92070 0.92980 0.92139 0.76558 0.77810 0.89291 0.88244 0.88475 0.88885 0.96366 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.96 37.16 0.30 -2.30 16 2 C 0.16 3.43 3.50 -67.60 -0.24 3.20 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.18 5.37 -26.62 -0.14 -2.33 16 5 C -0.12 -1.98 5.36 -26.69 -0.14 -2.12 16 6 C 0.12 2.35 2.60 -67.81 -0.18 2.18 16 7 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 8 N -0.70 -12.66 5.08 -54.74 -0.28 -12.94 16 9 C 0.60 11.22 7.78 -12.48 -0.10 11.13 16 10 O -0.53 -11.72 16.53 5.29 0.09 -11.63 16 11 C -0.09 -1.42 6.99 -83.55 -0.58 -2.01 16 12 C 0.09 1.08 11.31 -16.84 -0.19 0.89 16 13 N -0.37 -3.86 4.03 -67.85 -0.27 -4.14 16 14 C 0.09 0.42 11.51 59.85 0.69 1.11 16 15 N -0.07 -1.01 13.78 60.35 0.83 -0.18 16 16 N -0.20 -3.20 12.04 32.85 0.40 -2.80 16 17 C 0.17 4.19 4.84 -3.71 -0.02 4.17 16 18 N -0.58 -14.77 2.98 -164.78 -0.49 -15.26 16 19 C -0.25 -6.95 8.54 -15.06 -0.13 -7.07 16 20 H 0.07 1.87 6.27 -52.49 -0.33 1.54 16 21 C 0.01 0.19 4.97 -17.43 -0.09 0.10 16 22 N -0.90 -26.99 11.21 55.49 0.62 -26.37 16 23 Si 0.90 22.44 29.58 -169.99 -5.03 17.41 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 27 H 0.05 1.03 7.44 -51.93 -0.39 0.65 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 6.35 8.29 -40.82 -0.34 6.01 16 35 H 0.21 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 2.70 6.17 -51.93 -0.32 2.38 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -34.83 338.45 -5.80 -40.64 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.95 Total: 3.23 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -0.82 Total: 6.95 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.81 Total: -61.69 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.83 -5.80 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071467268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.682 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds