Wall clock time and date at job start Tue Mar 31 2020 03:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.58904 * 2 1 4 4 C 1.53185 * 109.58578 * 120.43067 * 2 1 3 5 5 C 1.53037 * 109.31322 * 174.42079 * 4 2 1 6 6 C 1.53036 * 109.53885 * 298.63362 * 5 4 2 7 7 H 1.09003 * 109.50169 * 301.40859 * 6 5 4 8 8 N 1.46501 * 109.52694 * 181.33195 * 6 5 4 9 9 C 1.34773 * 120.00276 * 155.14579 * 8 6 5 10 10 O 1.21589 * 120.00302 * 359.97438 * 9 8 6 11 11 C 1.47524 * 120.00079 * 179.97438 * 9 8 6 12 12 C 1.36599 * 125.77170 * 179.97438 * 11 9 8 13 13 N 1.34811 * 106.83923 * 179.97438 * 12 11 9 14 14 C 1.46501 * 126.59403 * 179.97438 * 13 12 11 15 15 N 1.40210 * 106.81489 * 0.02562 * 13 12 11 16 16 N 1.28759 * 108.36416 * 359.74829 * 15 13 12 17 17 C 1.53191 * 109.31401 * 61.36385 * 6 5 4 18 18 N 1.46923 * 108.77672 * 305.36978 * 17 6 5 19 19 C 1.36936 * 120.62934 * 233.59047 * 18 17 6 20 20 H 1.07995 * 120.00547 * 149.22205 * 19 18 17 21 21 C 1.38822 * 119.99709 * 329.21595 * 19 18 17 22 22 N 1.31620 * 119.99894 * 346.00001 * 21 19 18 23 23 Si 1.86801 * 119.99668 * 165.99941 * 21 19 18 24 24 H 1.48494 * 109.47391 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46889 * 120.00367 * 23 21 19 26 26 H 1.48491 * 109.47167 * 239.99841 * 23 21 19 27 27 H 1.09000 * 109.46870 * 180.28025 * 1 2 3 28 28 H 1.08992 * 109.47013 * 300.28332 * 1 2 3 29 29 H 1.08997 * 109.46833 * 60.28132 * 1 2 3 30 30 H 1.09004 * 109.49961 * 294.37500 * 4 2 1 31 31 H 1.09005 * 109.50106 * 54.46724 * 4 2 1 32 32 H 1.09005 * 109.45981 * 178.61036 * 5 4 2 33 33 H 1.08999 * 109.46060 * 58.65346 * 5 4 2 34 34 H 0.97008 * 120.00080 * 335.14842 * 8 6 5 35 35 H 1.07996 * 126.58166 * 359.96076 * 12 11 9 36 36 H 1.09001 * 109.47082 * 89.99826 * 14 13 12 37 37 H 1.09005 * 109.47447 * 210.00023 * 14 13 12 38 38 H 1.08999 * 109.47146 * 330.00006 * 14 13 12 39 39 H 1.08998 * 109.58839 * 185.57402 * 17 6 5 40 40 H 1.09005 * 109.58192 * 65.15315 * 17 6 5 41 41 H 0.96997 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0656 7 1 3.4983 -2.6529 -0.0087 8 7 5.4141 -1.8060 -0.1202 9 6 5.9669 -2.8465 -0.7745 10 8 5.2563 -3.6692 -1.3190 11 6 7.4344 -2.9874 -0.8299 12 6 8.1171 -3.9910 -1.4567 13 7 9.4296 -3.7465 -1.2696 14 6 10.5474 -4.5558 -1.7612 15 7 9.5191 -2.5695 -0.5130 16 7 8.3258 -2.1475 -0.2765 17 6 3.4650 -0.9453 -1.3250 18 7 2.0226 -0.6980 -1.1954 19 6 1.1538 -1.1099 -2.1704 20 1 0.1443 -1.3920 -1.9102 21 6 1.5706 -1.1649 -3.4934 22 7 2.6879 -0.5715 -3.8566 23 14 0.5458 -2.0812 -4.7582 24 1 -0.6549 -2.6559 -4.1000 25 1 0.1218 -1.1411 -5.8267 26 1 1.3555 -3.1744 -5.3534 27 1 -0.3633 -1.0277 0.0050 28 1 -0.3633 0.5182 0.8874 29 1 -0.3633 0.5095 -0.8925 30 1 1.7660 -0.1696 2.1366 31 1 1.6029 -1.7270 1.2891 32 1 3.9378 -1.3475 2.0652 33 1 4.0061 0.1459 1.0994 34 1 5.9812 -1.1499 0.3145 35 1 7.6878 -4.8210 -1.9980 36 1 10.8449 -4.2028 -2.7486 37 1 11.3896 -4.4674 -1.0748 38 1 10.2396 -5.5994 -1.8260 39 1 3.6519 -1.5690 -2.1992 40 1 3.9904 0.0038 -1.4317 41 1 2.9793 -0.6103 -4.7809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071467268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:00 Heat of formation + Delta-G solvation = 55.631526 kcal Electronic energy + Delta-G solvation = -23906.897311 eV Core-core repulsion = 20437.594643 eV Total energy + Delta-G solvation = -3469.302667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.22019 -40.73339 -39.13674 -36.05006 -35.56433 -34.62048 -32.56894 -31.83397 -31.52499 -28.77846 -27.69782 -26.76905 -24.68264 -23.88656 -23.17827 -22.20151 -21.43283 -20.92133 -19.10106 -18.31285 -17.38381 -17.23900 -17.09429 -16.71952 -15.89269 -15.65003 -15.61272 -15.41737 -15.05377 -14.95915 -14.47239 -14.13139 -14.04560 -13.96614 -13.47997 -13.16285 -13.05690 -12.74466 -12.69610 -12.53884 -12.30476 -12.26690 -12.08877 -11.95503 -11.65299 -11.44394 -11.33085 -11.14182 -11.05063 -10.53784 -10.41623 -10.02455 -8.58460 -7.82419 -5.31128 0.13132 0.60526 1.16402 1.43455 1.46564 1.55755 2.12060 2.29230 2.53110 3.17516 3.34116 3.47475 3.72018 3.87731 3.95680 4.00361 4.11404 4.27770 4.37380 4.41431 4.48287 4.62705 4.67532 4.73406 4.76991 4.84730 4.91373 5.03077 5.09354 5.20647 5.31854 5.34358 5.43878 5.46622 5.57524 5.63381 5.73276 5.81112 6.42596 6.51037 6.89252 7.16728 7.22858 7.91514 8.42621 9.23142 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.004545 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.306503 B = 6158.784858 C = 7430.966921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.019 0.981 4 C -0.116 4.116 5 C -0.109 4.109 6 C 0.131 3.869 7 H 0.061 0.939 8 N -0.698 5.698 9 C 0.597 3.403 10 O -0.573 6.573 11 C -0.123 4.123 12 C 0.107 3.893 13 N -0.350 5.350 14 C 0.074 3.926 15 N -0.088 5.088 16 N -0.224 5.224 17 C 0.182 3.818 18 N -0.603 5.603 19 C -0.250 4.250 20 H 0.076 0.924 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.959 3.041 24 H -0.261 1.261 25 H -0.290 1.290 26 H -0.298 1.298 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.412 0.588 35 H 0.233 0.767 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.044 0.956 40 H -0.007 1.007 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 -7.349 9.140 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.037 0.963 4 C -0.155 4.155 5 C -0.147 4.147 6 C 0.026 3.974 7 H 0.079 0.921 8 N -0.348 5.348 9 C 0.382 3.618 10 O -0.452 6.452 11 C -0.263 4.263 12 C -0.052 4.052 13 N -0.135 5.135 14 C -0.064 4.064 15 N -0.069 5.069 16 N -0.097 5.097 17 C 0.055 3.945 18 N -0.327 5.327 19 C -0.380 4.380 20 H 0.093 0.907 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.788 3.212 24 H -0.185 1.185 25 H -0.217 1.217 26 H -0.225 1.225 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.248 0.752 35 H 0.250 0.750 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.062 0.938 40 H 0.011 0.989 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.777 -6.932 9.268 17.993 hybrid contribution -0.567 -0.655 -1.666 1.877 sum 13.210 -7.586 7.602 17.025 Atomic orbital electron populations 1.21726 0.94586 1.01244 1.01032 1.20819 0.94402 0.93299 0.86778 0.96325 1.21941 0.94192 1.01069 0.98320 1.21660 0.97335 0.99866 0.95870 1.21618 0.78401 0.99599 0.97828 0.92122 1.45763 1.08008 1.26687 1.54295 1.17130 0.85266 0.81439 0.77979 1.90809 1.62828 1.44194 1.47370 1.21418 0.94501 0.99054 1.11285 1.23778 0.83661 1.00298 0.97418 1.50700 1.07273 1.19509 1.35985 1.22748 0.86153 0.95311 1.02189 1.81844 1.14199 0.97578 1.13290 1.74567 0.96866 1.22451 1.15838 1.20729 0.83843 0.95101 0.94827 1.44324 1.02442 1.65719 1.20232 1.19527 0.95869 1.36255 0.86393 0.90666 1.25877 0.99020 1.00758 0.99179 1.70184 1.25555 1.46291 1.16266 0.85316 0.78654 0.77896 0.79360 1.18537 1.21711 1.22500 0.93356 0.90317 0.94334 0.88608 0.92506 0.89698 0.91273 0.75196 0.75041 0.87603 0.86809 0.85232 0.93752 0.98873 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.96 71.98 0.57 -4.12 16 2 C 0.15 6.21 3.50 44.97 0.16 6.37 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -3.72 5.37 30.67 0.16 -3.56 16 5 C -0.11 -3.48 5.36 30.62 0.16 -3.31 16 6 C 0.13 5.38 2.60 45.07 0.12 5.50 16 7 H 0.06 2.78 7.58 -2.39 -0.02 2.76 16 8 N -0.70 -25.65 5.08 -445.35 -2.26 -27.91 16 9 C 0.60 23.05 7.78 86.69 0.67 23.72 16 10 O -0.57 -26.30 16.53 -3.99 -0.07 -26.36 16 11 C -0.12 -3.84 6.99 40.82 0.29 -3.56 16 12 C 0.11 2.42 11.31 83.85 0.95 3.37 16 13 N -0.35 -6.58 4.03 -368.59 -1.49 -8.07 16 14 C 0.07 0.45 11.51 127.77 1.47 1.92 16 15 N -0.09 -2.36 13.78 37.02 0.51 -1.85 16 16 N -0.22 -6.93 12.04 -49.99 -0.60 -7.54 16 17 C 0.18 9.45 4.84 86.36 0.42 9.86 16 18 N -0.60 -31.21 2.98 -675.23 -2.01 -33.22 16 19 C -0.25 -14.14 8.54 84.04 0.72 -13.42 16 20 H 0.08 4.08 6.27 -2.91 -0.02 4.06 16 21 C -0.05 -3.14 4.97 84.86 0.42 -2.72 16 22 N -0.94 -58.91 11.21 21.65 0.24 -58.67 16 23 Si 0.96 47.45 29.58 68.60 2.03 49.48 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 27 H 0.05 1.79 7.44 -2.39 -0.02 1.77 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.04 1.55 7.63 -2.39 -0.02 1.54 16 30 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.41 13.14 8.29 -92.70 -0.77 12.37 16 35 H 0.23 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.04 2.73 6.17 -2.39 -0.01 2.71 16 40 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 41 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -80.89 338.45 2.74 -78.15 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.28 Total: 15.94 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 6.11 Total: 20.05 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -5.61 Total: -137.25 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.07 Total: -26.36 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -80.89 2.74 -78.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071467268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.777 kcal (2) G-P(sol) polarization free energy of solvation -80.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds