Wall clock time and date at job start Tue Mar 31 2020 03:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58673 * 2 1 4 4 C 1.53191 * 109.58229 * 120.28336 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56566 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.09007 * 109.49480 * 181.31119 * 6 5 4 8 8 N 1.46500 * 109.49829 * 301.41173 * 6 5 4 9 9 C 1.34774 * 120.00029 * 205.00092 * 8 6 5 10 10 O 1.21601 * 120.00030 * 0.02562 * 9 8 6 11 11 C 1.47521 * 120.00179 * 179.97438 * 9 8 6 12 12 C 1.36590 * 125.77143 * 179.71461 * 11 9 8 13 13 N 1.34821 * 106.84049 * 179.90102 * 12 11 9 14 14 C 1.46499 * 126.59571 * 180.13358 * 13 12 11 15 15 N 1.40211 * 106.80941 * 0.35837 * 13 12 11 16 16 N 1.28764 * 108.36434 * 359.76963 * 15 13 12 17 17 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 18 18 N 1.46921 * 109.70627 * 239.64259 * 2 1 3 19 19 C 1.36944 * 120.63036 * 6.51200 * 18 2 1 20 20 H 1.07995 * 119.99899 * 330.20373 * 19 18 2 21 21 C 1.38810 * 119.99902 * 150.20045 * 19 18 2 22 22 N 1.31620 * 119.99942 * 344.48280 * 21 19 18 23 23 Si 1.86795 * 119.99872 * 164.47877 * 21 19 18 24 24 H 1.48509 * 109.47049 * 90.00392 * 23 21 19 25 25 H 1.48497 * 109.47148 * 209.99933 * 23 21 19 26 26 H 1.48495 * 109.47222 * 330.00437 * 23 21 19 27 27 H 1.09000 * 109.47456 * 300.00245 * 1 2 3 28 28 H 1.09001 * 109.46694 * 60.00114 * 1 2 3 29 29 H 1.09003 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.49925 * 294.51526 * 4 2 1 31 31 H 1.08999 * 109.49936 * 54.61561 * 4 2 1 32 32 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 33 33 H 1.08993 * 109.46150 * 178.61238 * 5 4 2 34 34 H 0.96997 * 120.00202 * 24.99847 * 8 6 5 35 35 H 1.08004 * 126.58479 * 0.04643 * 12 11 9 36 36 H 1.08996 * 109.46719 * 270.24417 * 14 13 12 37 37 H 1.08997 * 109.47267 * 30.24521 * 14 13 12 38 38 H 1.08999 * 109.47188 * 150.24432 * 14 13 12 39 39 H 1.08998 * 109.58197 * 65.14932 * 17 6 5 40 40 H 1.08994 * 109.58664 * 185.43222 * 17 6 5 41 41 H 0.97005 * 119.99905 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6609 -0.0597 7 1 5.0449 -1.7626 -0.0985 8 7 3.3464 -2.9888 0.0183 9 6 3.9058 -4.0290 -0.6309 10 8 4.9203 -3.8654 -1.2810 11 6 3.2881 -5.3663 -0.5518 12 6 3.7498 -6.4966 -1.1642 13 7 2.9028 -7.4927 -0.8355 14 6 2.9947 -8.8924 -1.2581 15 7 1.9142 -6.9303 -0.0156 16 7 2.1725 -5.6773 0.1302 17 6 3.4685 -0.9436 -1.3209 18 7 2.0254 -0.6990 -1.1935 19 6 1.1585 -1.1152 -2.1685 20 1 0.1448 -1.3840 -1.9108 21 6 1.5827 -1.1915 -3.4880 22 7 2.6926 -0.5886 -3.8583 23 14 0.5786 -2.1499 -4.7379 24 1 -0.4165 -1.2471 -5.3706 25 1 1.4812 -2.7000 -5.7810 26 1 -0.1273 -3.2643 -4.0561 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7637 -0.1655 2.1372 31 1 1.6048 -1.7246 1.2921 32 1 4.0045 0.1528 1.1023 33 1 3.9379 -1.3391 2.0704 34 1 2.5374 -3.1194 0.5373 35 1 4.6266 -6.5775 -1.7896 36 1 2.4501 -9.0261 -2.1928 37 1 4.0411 -9.1594 -1.4058 38 1 2.5612 -9.5330 -0.4901 39 1 3.9920 0.0063 -1.4285 40 1 3.6599 -1.5673 -2.1941 41 1 2.9889 -0.6416 -4.7805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071467269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:03 Heat of formation + Delta-G solvation = 84.795267 kcal Electronic energy + Delta-G solvation = -24654.797587 eV Core-core repulsion = 21186.759554 eV Total energy + Delta-G solvation = -3468.038033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03656 -39.20824 -37.39288 -34.64779 -33.99889 -32.64008 -31.13163 -30.28331 -29.78504 -27.87376 -26.13130 -24.92084 -23.40617 -22.13678 -22.07980 -20.66051 -20.17913 -18.61636 -18.00486 -16.27903 -16.17889 -16.02706 -15.34587 -14.93996 -14.48700 -14.27376 -13.97906 -13.86725 -13.56306 -13.32536 -13.26001 -12.98349 -12.69371 -12.40957 -12.03186 -11.82818 -11.18558 -11.12932 -11.07432 -10.90819 -10.78178 -10.64214 -10.34049 -10.31145 -10.25243 -9.88576 -9.60899 -9.41095 -9.34954 -9.14021 -8.37663 -8.26691 -6.50613 -5.67814 -3.10869 1.23159 1.99764 2.07574 3.41613 3.48728 3.51375 3.66413 3.87494 4.32752 4.41052 4.56999 4.76222 4.93983 5.02930 5.16701 5.39734 5.41347 5.44329 5.52420 5.60462 5.68976 5.95855 6.10416 6.21014 6.24150 6.35914 6.42290 6.44266 6.53418 6.60726 6.71265 6.77353 6.98160 7.13670 7.22391 7.45397 7.75506 7.92134 7.98215 8.26225 8.57351 8.81446 9.31722 9.96202 10.52595 11.40446 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.006482 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.291979 B = 4318.709205 C = 5298.343527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.024 0.976 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.077 0.923 8 N -0.682 5.682 9 C 0.601 3.399 10 O -0.547 6.547 11 C -0.086 4.086 12 C 0.086 3.914 13 N -0.369 5.369 14 C 0.090 3.910 15 N -0.074 5.074 16 N -0.201 5.201 17 C 0.163 3.837 18 N -0.582 5.582 19 C -0.245 4.245 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.893 3.107 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 H 0.037 0.963 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.403 0.597 35 H 0.204 0.796 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.026 0.974 40 H 0.095 0.905 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.644 -11.870 8.383 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.042 0.958 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.095 0.905 8 N -0.331 5.331 9 C 0.384 3.616 10 O -0.425 6.425 11 C -0.226 4.226 12 C -0.070 4.070 13 N -0.155 5.155 14 C -0.051 4.051 15 N -0.054 5.054 16 N -0.074 5.074 17 C 0.036 3.964 18 N -0.305 5.305 19 C -0.374 4.374 20 H 0.084 0.916 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.723 3.277 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.239 0.761 35 H 0.220 0.780 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.044 0.956 40 H 0.113 0.887 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.155 -12.026 8.541 14.907 hybrid contribution -0.010 -0.614 -1.271 1.412 sum 2.145 -12.639 7.270 14.738 Atomic orbital electron populations 1.21796 0.96155 1.01327 1.00085 1.20450 0.92879 0.93560 0.87137 0.95795 1.22085 0.95136 1.00929 0.99039 1.21685 0.97099 1.00066 0.96755 1.21850 0.97000 0.81543 0.98457 0.90460 1.45651 1.29208 1.08021 1.50223 1.16647 0.83449 0.81917 0.79606 1.90777 1.25148 1.84415 1.42162 1.21693 0.97642 0.96879 1.06391 1.23347 0.97151 0.87291 0.99256 1.50322 1.19613 1.10035 1.35537 1.22125 1.04585 0.76158 1.02258 1.81950 1.09733 1.02021 1.11710 1.74621 1.11496 1.06030 1.15297 1.21164 0.83827 0.97047 0.94351 1.44018 1.02636 1.64802 1.19067 1.19064 0.95038 1.37334 0.85994 0.91578 1.25025 0.97778 0.99589 0.96921 1.69992 1.24000 1.43855 1.16597 0.86438 0.79442 0.80194 0.81585 1.21485 1.21728 1.20713 0.94431 0.92126 0.92858 0.92848 0.92414 0.91052 0.92970 0.76068 0.77972 0.89415 0.88583 0.88309 0.95571 0.88677 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.96 37.16 0.30 -2.28 16 2 C 0.17 3.39 3.49 -67.60 -0.24 3.16 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.24 5.21 -26.61 -0.14 -2.37 16 5 C -0.12 -1.94 5.59 -26.69 -0.15 -2.08 16 6 C 0.12 2.30 2.81 -67.81 -0.19 2.11 16 7 H 0.08 1.52 7.58 -51.93 -0.39 1.12 16 8 N -0.68 -13.25 4.91 -54.73 -0.27 -13.52 16 9 C 0.60 12.03 7.79 -12.48 -0.10 11.93 16 10 O -0.55 -12.16 16.53 5.28 0.09 -12.07 16 11 C -0.09 -1.51 6.99 -83.55 -0.58 -2.10 16 12 C 0.09 1.17 11.31 -16.83 -0.19 0.98 16 13 N -0.37 -4.47 4.03 -67.86 -0.27 -4.74 16 14 C 0.09 0.54 11.51 59.85 0.69 1.23 16 15 N -0.07 -1.16 13.78 60.35 0.83 -0.33 16 16 N -0.20 -3.57 12.04 32.84 0.40 -3.17 16 17 C 0.16 3.94 4.88 -3.71 -0.02 3.92 16 18 N -0.58 -14.22 2.90 -164.78 -0.48 -14.70 16 19 C -0.24 -6.65 8.58 -15.06 -0.13 -6.77 16 20 H 0.07 1.78 6.24 -52.49 -0.33 1.45 16 21 C 0.01 0.16 4.94 -17.43 -0.09 0.07 16 22 N -0.90 -26.74 11.23 55.49 0.62 -26.12 16 23 Si 0.89 22.58 29.58 -169.99 -5.03 17.55 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 29 H 0.05 1.03 7.42 -51.93 -0.39 0.65 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.00 6.40 -51.93 -0.33 0.67 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 7.57 6.46 -40.82 -0.26 7.30 16 35 H 0.20 2.11 8.06 -52.48 -0.42 1.69 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 2.70 6.15 -51.93 -0.32 2.38 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -34.18 334.93 -5.68 -39.86 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.78 Total: 4.41 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.83 Total: 7.78 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.83 Total: -62.58 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.18 -5.68 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071467269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.659 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds