Wall clock time and date at job start Tue Mar 31 2020 03:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58673 * 2 1 4 4 C 1.53191 * 109.58229 * 120.28336 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56566 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.09007 * 109.49480 * 181.31119 * 6 5 4 8 8 N 1.46500 * 109.49829 * 301.41173 * 6 5 4 9 9 C 1.34774 * 120.00029 * 205.00092 * 8 6 5 10 10 O 1.21601 * 120.00030 * 0.02562 * 9 8 6 11 11 C 1.47521 * 120.00179 * 179.97438 * 9 8 6 12 12 C 1.36590 * 125.77143 * 179.71461 * 11 9 8 13 13 N 1.34821 * 106.84049 * 179.90102 * 12 11 9 14 14 C 1.46499 * 126.59571 * 180.13358 * 13 12 11 15 15 N 1.40211 * 106.80941 * 0.35837 * 13 12 11 16 16 N 1.28764 * 108.36434 * 359.76963 * 15 13 12 17 17 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 18 18 N 1.46921 * 109.70627 * 239.64259 * 2 1 3 19 19 C 1.36944 * 120.63036 * 6.51200 * 18 2 1 20 20 H 1.07995 * 119.99899 * 330.20373 * 19 18 2 21 21 C 1.38810 * 119.99902 * 150.20045 * 19 18 2 22 22 N 1.31620 * 119.99942 * 344.48280 * 21 19 18 23 23 Si 1.86795 * 119.99872 * 164.47877 * 21 19 18 24 24 H 1.48509 * 109.47049 * 90.00392 * 23 21 19 25 25 H 1.48497 * 109.47148 * 209.99933 * 23 21 19 26 26 H 1.48495 * 109.47222 * 330.00437 * 23 21 19 27 27 H 1.09000 * 109.47456 * 300.00245 * 1 2 3 28 28 H 1.09001 * 109.46694 * 60.00114 * 1 2 3 29 29 H 1.09003 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.49925 * 294.51526 * 4 2 1 31 31 H 1.08999 * 109.49936 * 54.61561 * 4 2 1 32 32 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 33 33 H 1.08993 * 109.46150 * 178.61238 * 5 4 2 34 34 H 0.96997 * 120.00202 * 24.99847 * 8 6 5 35 35 H 1.08004 * 126.58479 * 0.04643 * 12 11 9 36 36 H 1.08996 * 109.46719 * 270.24417 * 14 13 12 37 37 H 1.08997 * 109.47267 * 30.24521 * 14 13 12 38 38 H 1.08999 * 109.47188 * 150.24432 * 14 13 12 39 39 H 1.08998 * 109.58197 * 65.14932 * 17 6 5 40 40 H 1.08994 * 109.58664 * 185.43222 * 17 6 5 41 41 H 0.97005 * 119.99905 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6609 -0.0597 7 1 5.0449 -1.7626 -0.0985 8 7 3.3464 -2.9888 0.0183 9 6 3.9058 -4.0290 -0.6309 10 8 4.9203 -3.8654 -1.2810 11 6 3.2881 -5.3663 -0.5518 12 6 3.7498 -6.4966 -1.1642 13 7 2.9028 -7.4927 -0.8355 14 6 2.9947 -8.8924 -1.2581 15 7 1.9142 -6.9303 -0.0156 16 7 2.1725 -5.6773 0.1302 17 6 3.4685 -0.9436 -1.3209 18 7 2.0254 -0.6990 -1.1935 19 6 1.1585 -1.1152 -2.1685 20 1 0.1448 -1.3840 -1.9108 21 6 1.5827 -1.1915 -3.4880 22 7 2.6926 -0.5886 -3.8583 23 14 0.5786 -2.1499 -4.7379 24 1 -0.4165 -1.2471 -5.3706 25 1 1.4812 -2.7000 -5.7810 26 1 -0.1273 -3.2643 -4.0561 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.7637 -0.1655 2.1372 31 1 1.6048 -1.7246 1.2921 32 1 4.0045 0.1528 1.1023 33 1 3.9379 -1.3391 2.0704 34 1 2.5374 -3.1194 0.5373 35 1 4.6266 -6.5775 -1.7896 36 1 2.4501 -9.0261 -2.1928 37 1 4.0411 -9.1594 -1.4058 38 1 2.5612 -9.5330 -0.4901 39 1 3.9920 0.0063 -1.4285 40 1 3.6599 -1.5673 -2.1941 41 1 2.9889 -0.6416 -4.7805 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071467269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:03 Heat of formation + Delta-G solvation = 59.421444 kcal Electronic energy + Delta-G solvation = -24655.897878 eV Core-core repulsion = 21186.759554 eV Total energy + Delta-G solvation = -3469.138324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.17950 -40.78246 -39.03492 -35.83047 -35.51733 -34.47189 -32.53991 -31.77872 -31.50465 -28.71893 -27.81248 -26.75974 -24.76844 -23.84276 -23.15791 -22.16247 -21.67719 -20.31341 -19.24207 -18.18936 -17.33117 -17.21052 -16.96534 -16.58044 -15.91239 -15.68053 -15.59291 -15.47906 -15.03411 -14.71153 -14.46300 -14.05034 -14.02084 -13.93240 -13.61677 -13.12987 -12.95672 -12.87970 -12.61016 -12.53792 -12.41691 -12.25661 -12.12387 -12.07767 -11.55912 -11.30856 -11.23108 -11.09264 -11.01583 -10.50796 -10.37137 -9.88060 -8.53091 -7.80526 -5.24789 0.15984 0.66756 1.19954 1.38175 1.40194 1.48163 2.22218 2.43605 2.50713 3.25052 3.34423 3.52939 3.66625 3.89597 3.99214 4.06970 4.13362 4.21779 4.36736 4.50260 4.52263 4.65838 4.67108 4.74933 4.81696 4.84583 4.98738 5.06398 5.11542 5.13671 5.28542 5.35678 5.46767 5.57112 5.64066 5.70264 5.76500 5.77107 6.47180 6.58251 6.94028 7.21532 7.29533 7.95673 8.46184 9.24693 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.006482 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.291979 B = 4318.709205 C = 5298.343527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.019 0.981 4 C -0.122 4.122 5 C -0.110 4.110 6 C 0.125 3.875 7 H 0.075 0.925 8 N -0.680 5.680 9 C 0.596 3.404 10 O -0.579 6.579 11 C -0.122 4.122 12 C 0.103 3.897 13 N -0.351 5.351 14 C 0.075 3.925 15 N -0.092 5.092 16 N -0.225 5.225 17 C 0.172 3.828 18 N -0.595 5.595 19 C -0.235 4.235 20 H 0.068 0.932 21 C -0.052 4.052 22 N -0.933 5.933 23 Si 0.947 3.053 24 H -0.282 1.282 25 H -0.298 1.298 26 H -0.279 1.279 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.407 0.593 35 H 0.234 0.766 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.003 0.997 40 H 0.048 0.952 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -13.602 10.100 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.161 4.161 5 C -0.148 4.148 6 C 0.019 3.981 7 H 0.093 0.907 8 N -0.329 5.329 9 C 0.381 3.619 10 O -0.459 6.459 11 C -0.263 4.263 12 C -0.055 4.055 13 N -0.136 5.136 14 C -0.064 4.064 15 N -0.072 5.072 16 N -0.099 5.099 17 C 0.045 3.955 18 N -0.319 5.319 19 C -0.366 4.366 20 H 0.086 0.914 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.777 3.223 24 H -0.209 1.209 25 H -0.225 1.225 26 H -0.204 1.204 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.244 0.756 35 H 0.251 0.749 36 H 0.121 0.879 37 H 0.149 0.851 38 H 0.132 0.868 39 H 0.021 0.979 40 H 0.067 0.933 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.615 -13.792 10.305 17.293 hybrid contribution 0.138 -0.159 -1.795 1.808 sum 1.753 -13.951 8.510 16.436 Atomic orbital electron populations 1.21722 0.95000 1.01041 1.00828 1.20748 0.93969 0.93331 0.86953 0.96352 1.21971 0.95075 1.00762 0.98265 1.21667 0.97009 1.00118 0.95995 1.21626 0.96725 0.81872 0.97844 0.90717 1.45631 1.29305 1.07794 1.50161 1.17053 0.83107 0.83010 0.78764 1.90743 1.26557 1.85187 1.43422 1.21551 0.98897 0.96784 1.09026 1.23774 0.97439 0.86367 0.97920 1.50704 1.17738 1.11691 1.33497 1.22732 1.07478 0.72870 1.03281 1.81830 1.11028 1.01501 1.12882 1.74575 1.11955 1.07100 1.16234 1.20863 0.84024 0.95513 0.95055 1.44227 1.02338 1.65476 1.19820 1.19326 0.95270 1.35491 0.86517 0.91448 1.25666 0.99008 1.01239 0.98736 1.70149 1.25744 1.45914 1.16233 0.85569 0.78108 0.79086 0.79545 1.20890 1.22500 1.20408 0.90539 0.94542 0.93567 0.89120 0.92639 0.90233 0.89791 0.75616 0.74931 0.87895 0.85052 0.86806 0.97900 0.93320 0.94706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.96 71.98 0.57 -4.09 16 2 C 0.16 6.15 3.49 44.98 0.16 6.31 16 3 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.12 -3.76 5.21 30.67 0.16 -3.60 16 5 C -0.11 -3.35 5.59 30.62 0.17 -3.18 16 6 C 0.13 4.93 2.81 45.07 0.13 5.06 16 7 H 0.07 2.97 7.58 -2.38 -0.02 2.96 16 8 N -0.68 -26.47 4.91 -445.32 -2.19 -28.66 16 9 C 0.60 24.17 7.79 86.69 0.67 24.85 16 10 O -0.58 -26.35 16.53 -4.03 -0.07 -26.42 16 11 C -0.12 -4.24 6.99 40.81 0.29 -3.96 16 12 C 0.10 2.62 11.31 83.85 0.95 3.57 16 13 N -0.35 -7.63 4.03 -368.60 -1.49 -9.12 16 14 C 0.07 0.62 11.51 127.77 1.47 2.09 16 15 N -0.09 -2.77 13.78 37.02 0.51 -2.26 16 16 N -0.23 -7.90 12.04 -50.00 -0.60 -8.51 16 17 C 0.17 8.64 4.88 86.36 0.42 9.06 16 18 N -0.59 -29.49 2.90 -675.25 -1.96 -31.45 16 19 C -0.24 -13.02 8.58 84.03 0.72 -12.30 16 20 H 0.07 3.66 6.24 -2.91 -0.02 3.64 16 21 C -0.05 -3.01 4.94 84.86 0.42 -2.59 16 22 N -0.93 -57.87 11.23 21.65 0.24 -57.62 16 23 Si 0.95 47.59 29.58 68.60 2.03 49.62 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 26 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.47 7.66 -2.39 -0.02 1.45 16 29 H 0.05 1.72 7.42 -2.39 -0.02 1.70 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 1.77 6.40 -2.39 -0.02 1.75 16 32 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.41 15.09 6.46 -92.71 -0.60 14.49 16 35 H 0.23 4.26 8.06 -2.91 -0.02 4.23 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.05 2.90 6.15 -2.39 -0.01 2.89 16 41 H 0.24 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -78.41 334.93 3.06 -75.35 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.45 Total: 17.85 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 6.13 Total: 21.21 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -5.48 Total: -137.62 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.07 Total: -26.42 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -78.41 3.06 -75.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071467269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.775 kcal (2) G-P(sol) polarization free energy of solvation -78.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds