Wall clock time and date at job start Tue Mar 31 2020 03:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.58784 * 2 1 4 4 C 1.53183 * 109.58666 * 239.71206 * 2 1 3 5 5 C 1.53039 * 109.31456 * 185.57828 * 4 2 1 6 6 C 1.53041 * 109.53716 * 61.36778 * 5 4 2 7 7 H 1.08997 * 109.50232 * 178.65363 * 6 5 4 8 8 N 1.46501 * 109.49560 * 58.58589 * 6 5 4 9 9 C 1.34784 * 119.99944 * 154.72438 * 8 6 5 10 10 O 1.21595 * 119.99450 * 0.28008 * 9 8 6 11 11 C 1.47521 * 119.99846 * 180.27611 * 9 8 6 12 12 C 1.36600 * 125.76517 * 179.71957 * 11 9 8 13 13 N 1.34822 * 106.83518 * 179.89984 * 12 11 9 14 14 C 1.46502 * 126.58941 * 180.14939 * 13 12 11 15 15 N 1.40206 * 106.81137 * 0.35309 * 13 12 11 16 16 N 1.28760 * 108.36861 * 359.77255 * 15 13 12 17 17 C 1.53196 * 109.31406 * 298.63719 * 6 5 4 18 18 N 1.46926 * 108.77447 * 54.63136 * 17 6 5 19 19 C 1.36938 * 120.62966 * 126.41130 * 18 17 6 20 20 H 1.07997 * 120.00053 * 209.52521 * 19 18 17 21 21 C 1.38816 * 119.99668 * 29.53152 * 19 18 17 22 22 N 1.31615 * 119.99937 * 16.12718 * 21 19 18 23 23 Si 1.86803 * 119.99628 * 196.12453 * 21 19 18 24 24 H 1.48496 * 109.46672 * 92.99159 * 23 21 19 25 25 H 1.48497 * 109.47043 * 212.98478 * 23 21 19 26 26 H 1.48492 * 109.47262 * 332.98931 * 23 21 19 27 27 H 1.08997 * 109.47722 * 180.28479 * 1 2 3 28 28 H 1.09002 * 109.47414 * 300.28512 * 1 2 3 29 29 H 1.09000 * 109.47026 * 60.28005 * 1 2 3 30 30 H 1.09004 * 109.49636 * 65.63093 * 4 2 1 31 31 H 1.09002 * 109.50369 * 305.53280 * 4 2 1 32 32 H 1.08996 * 109.46017 * 301.35042 * 5 4 2 33 33 H 1.09001 * 109.45267 * 181.37941 * 5 4 2 34 34 H 0.97005 * 120.00161 * 335.00092 * 8 6 5 35 35 H 1.07995 * 126.58495 * 0.03477 * 12 11 9 36 36 H 1.08996 * 109.46730 * 270.26318 * 14 13 12 37 37 H 1.08994 * 109.47132 * 30.27063 * 14 13 12 38 38 H 1.08999 * 109.46237 * 150.27043 * 14 13 12 39 39 H 1.08996 * 109.58831 * 174.42073 * 17 6 5 40 40 H 1.08998 * 109.58291 * 294.85111 * 17 6 5 41 41 H 0.97003 * 120.00042 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2462 5 6 3.5674 -0.8466 -1.1711 6 6 3.9568 -1.6659 0.0615 7 1 5.0411 -1.7703 0.1014 8 7 3.3404 -2.9924 -0.0184 9 6 3.9000 -4.0356 0.6261 10 8 4.9137 -3.8744 1.2781 11 6 3.2826 -5.3726 0.5406 12 6 3.7507 -6.5079 1.1391 13 7 2.8992 -7.5009 0.8126 14 6 2.9919 -8.9026 1.2282 15 7 1.9107 -6.9350 -0.0050 16 7 2.1678 -5.6810 -0.1438 17 6 3.4650 -0.9487 1.3227 18 7 2.0225 -0.7010 1.1937 19 6 1.1536 -1.1154 2.1676 20 1 0.1382 -1.3775 1.9095 21 6 1.5780 -1.1985 3.4867 22 7 2.6851 -0.5933 3.8612 23 14 0.5777 -2.1694 4.7302 24 1 1.0941 -3.5598 4.8034 25 1 0.6907 -1.5286 6.0650 26 1 -0.8466 -2.1917 4.3107 27 1 -0.3634 -1.0276 0.0051 28 1 -0.3634 0.5183 0.8874 29 1 -0.3633 0.5095 -0.8925 30 1 1.7660 -0.1642 -2.1370 31 1 1.6029 -1.7238 -1.2934 32 1 4.0061 0.1486 -1.0990 33 1 3.9376 -1.3425 -2.0684 34 1 2.5317 -3.1210 -0.5385 35 1 4.6322 -6.5931 1.7571 36 1 3.5828 -9.4589 0.5007 37 1 3.4703 -8.9608 2.2058 38 1 1.9913 -9.3308 1.2873 39 1 3.6517 -1.5745 2.1953 40 1 3.9902 0.0002 1.4317 41 1 2.9815 -0.6510 4.7830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071467270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:06 Heat of formation + Delta-G solvation = 84.791206 kcal Electronic energy + Delta-G solvation = -24653.517851 eV Core-core repulsion = 21185.479642 eV Total energy + Delta-G solvation = -3468.038209 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.03840 -39.21046 -37.39690 -34.64940 -34.00262 -32.64213 -31.13401 -30.28551 -29.78711 -27.87501 -26.12942 -24.92424 -23.40787 -22.13841 -22.08248 -20.66154 -20.18098 -18.61808 -18.00634 -16.27918 -16.17952 -16.03070 -15.34948 -14.94817 -14.47786 -14.27986 -13.97995 -13.87252 -13.56827 -13.33001 -13.24407 -12.99100 -12.69705 -12.41031 -12.03352 -11.83116 -11.18885 -11.13426 -11.07453 -10.90156 -10.78328 -10.67070 -10.34346 -10.29297 -10.24325 -9.88634 -9.60931 -9.40941 -9.34913 -9.14135 -8.37701 -8.26947 -6.51763 -5.67887 -3.10770 1.22964 1.99509 2.07450 3.42431 3.49518 3.50143 3.66597 3.86951 4.33648 4.41019 4.56897 4.74975 4.93964 5.02723 5.16577 5.39432 5.41397 5.44152 5.52243 5.60074 5.68854 5.95730 6.10265 6.20864 6.24065 6.35775 6.42104 6.44215 6.53285 6.60499 6.71177 6.77194 6.98003 7.13673 7.22260 7.45294 7.74897 7.92327 7.97971 8.26010 8.56955 8.81286 9.31462 9.95988 10.52300 11.40293 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012877 B = 0.006473 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.946549 B = 4324.869197 C = 5302.028600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.077 0.923 8 N -0.682 5.682 9 C 0.601 3.399 10 O -0.547 6.547 11 C -0.086 4.086 12 C 0.086 3.914 13 N -0.369 5.369 14 C 0.090 3.910 15 N -0.074 5.074 16 N -0.201 5.201 17 C 0.163 3.837 18 N -0.582 5.582 19 C -0.245 4.245 20 H 0.068 0.932 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.894 3.106 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.279 1.279 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.403 0.597 35 H 0.203 0.797 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.027 0.973 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -11.829 -8.401 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.042 0.958 4 C -0.172 4.172 5 C -0.156 4.156 6 C 0.012 3.988 7 H 0.095 0.905 8 N -0.331 5.331 9 C 0.384 3.616 10 O -0.425 6.425 11 C -0.226 4.226 12 C -0.070 4.070 13 N -0.155 5.155 14 C -0.051 4.051 15 N -0.054 5.054 16 N -0.075 5.075 17 C 0.036 3.964 18 N -0.305 5.305 19 C -0.374 4.374 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.725 3.275 24 H -0.219 1.219 25 H -0.219 1.219 26 H -0.205 1.205 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.239 0.761 35 H 0.220 0.780 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.045 0.955 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.086 -11.970 -8.552 14.858 hybrid contribution 0.024 -0.652 1.241 1.402 sum 2.110 -12.622 -7.312 14.739 Atomic orbital electron populations 1.21799 0.96154 1.01354 1.00052 1.20452 0.92897 0.93549 0.87133 0.95777 1.22083 0.95138 1.00926 0.99034 1.21686 0.97110 1.00059 0.96756 1.21849 0.96973 0.81571 0.98448 0.90458 1.45654 1.29154 1.07955 1.50358 1.16648 0.83430 0.81920 0.79624 1.90775 1.25220 1.84493 1.42001 1.21693 0.97529 0.96768 1.06612 1.23349 0.96944 0.87314 0.99424 1.50319 1.19365 1.10039 1.35778 1.22126 1.05394 0.75959 1.01637 1.81945 1.09854 1.01892 1.11724 1.74619 1.11629 1.06059 1.15147 1.21171 0.83849 0.97038 0.94347 1.44034 1.02680 1.64683 1.19128 1.19101 0.94892 1.37397 0.86050 0.91477 1.25021 0.97838 0.99574 0.96891 1.69999 1.24265 1.43562 1.16583 0.86395 0.79844 0.80036 0.81230 1.21857 1.21863 1.20484 0.92844 0.92135 0.94451 0.92844 0.92410 0.91047 0.92970 0.76066 0.77980 0.89484 0.88564 0.88269 0.88694 0.95547 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.95 37.16 0.30 -2.29 16 2 C 0.17 3.39 3.50 -67.60 -0.24 3.15 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.23 5.20 -26.62 -0.14 -2.37 16 5 C -0.12 -1.93 5.59 -26.69 -0.15 -2.08 16 6 C 0.12 2.30 2.81 -67.81 -0.19 2.11 16 7 H 0.08 1.52 7.57 -51.93 -0.39 1.12 16 8 N -0.68 -13.26 4.91 -54.73 -0.27 -13.52 16 9 C 0.60 12.05 7.79 -12.47 -0.10 11.96 16 10 O -0.55 -12.19 16.52 5.28 0.09 -12.10 16 11 C -0.09 -1.52 6.99 -83.55 -0.58 -2.10 16 12 C 0.09 1.18 11.31 -16.83 -0.19 0.99 16 13 N -0.37 -4.48 4.03 -67.85 -0.27 -4.75 16 14 C 0.09 0.54 11.51 59.85 0.69 1.23 16 15 N -0.07 -1.16 13.78 60.35 0.83 -0.33 16 16 N -0.20 -3.57 12.04 32.85 0.40 -3.17 16 17 C 0.16 3.94 4.89 -3.71 -0.02 3.92 16 18 N -0.58 -14.21 2.90 -164.78 -0.48 -14.68 16 19 C -0.24 -6.64 8.58 -15.06 -0.13 -6.77 16 20 H 0.07 1.81 6.22 -52.49 -0.33 1.48 16 21 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 22 N -0.90 -26.73 11.25 55.49 0.62 -26.11 16 23 Si 0.89 22.62 29.58 -169.99 -5.03 17.59 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 H 0.05 1.04 7.40 -51.93 -0.38 0.65 16 28 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.00 6.40 -51.93 -0.33 0.66 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 7.56 6.46 -40.82 -0.26 7.29 16 35 H 0.20 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 2.69 6.14 -51.93 -0.32 2.38 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -34.15 334.90 -5.68 -39.83 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.78 Total: 4.40 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -0.84 Total: 7.81 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: 0.83 Total: -62.57 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.15 -5.68 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071467270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.622 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds