Wall clock time and date at job start Tue Mar 31 2020 03:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58279 * 2 1 4 4 C 1.53191 * 109.58446 * 239.57265 * 2 1 3 5 5 C 1.53041 * 109.30762 * 185.57774 * 4 2 1 6 6 C 1.53040 * 109.53999 * 61.36769 * 5 4 2 7 7 H 1.08996 * 109.52881 * 58.59690 * 6 5 4 8 8 N 1.46496 * 109.49914 * 178.68306 * 6 5 4 9 9 C 1.34774 * 120.00052 * 204.83449 * 8 6 5 10 10 O 1.21618 * 119.99998 * 4.96821 * 9 8 6 11 11 C 1.47233 * 120.00256 * 184.96592 * 9 8 6 12 12 C 1.37006 * 127.18783 * 5.02127 * 11 9 8 13 13 N 1.33321 * 106.37264 * 180.02562 * 12 11 9 14 14 N 1.28510 * 109.44029 * 359.97438 * 13 12 11 15 15 N 1.28714 * 110.63972 * 0.02562 * 14 13 12 16 16 C 1.46497 * 126.03800 * 180.25590 * 15 14 13 17 17 C 1.53201 * 109.31211 * 298.63030 * 6 5 4 18 18 N 1.46924 * 108.77013 * 54.63524 * 17 6 5 19 19 C 1.36940 * 120.63208 * 126.42042 * 18 17 6 20 20 H 1.07993 * 120.00045 * 212.14798 * 19 18 17 21 21 C 1.38808 * 119.99824 * 32.13728 * 19 18 17 22 22 N 1.31624 * 120.00183 * 10.27653 * 21 19 18 23 23 Si 1.86798 * 120.00182 * 190.26930 * 21 19 18 24 24 H 1.48501 * 109.46915 * 90.00038 * 23 21 19 25 25 H 1.48502 * 109.47286 * 210.00021 * 23 21 19 26 26 H 1.48498 * 109.47264 * 330.00507 * 23 21 19 27 27 H 1.09000 * 109.46892 * 299.72108 * 1 2 3 28 28 H 1.09007 * 109.46900 * 59.71487 * 1 2 3 29 29 H 1.08995 * 109.47410 * 179.71796 * 1 2 3 30 30 H 1.08997 * 109.49345 * 305.52608 * 4 2 1 31 31 H 1.09000 * 109.49991 * 65.62977 * 4 2 1 32 32 H 1.08998 * 109.46242 * 301.34272 * 5 4 2 33 33 H 1.09006 * 109.45746 * 181.38343 * 5 4 2 34 34 H 0.97002 * 120.00117 * 24.83124 * 8 6 5 35 35 H 1.07995 * 126.81410 * 359.97438 * 12 11 9 36 36 H 1.08997 * 109.47249 * 264.23600 * 16 15 14 37 37 H 1.08996 * 109.47030 * 24.23925 * 16 15 14 38 38 H 1.09007 * 109.47212 * 144.23961 * 16 15 14 39 39 H 1.08994 * 109.58855 * 174.42030 * 17 6 5 40 40 H 1.08998 * 109.58374 * 294.85338 * 17 6 5 41 41 H 0.96998 * 120.00411 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2445 5 6 3.5675 -0.8494 -1.1690 6 6 3.9569 -1.6656 0.0656 7 1 3.4987 -2.6530 0.0090 8 7 5.4142 -1.8051 0.1199 9 6 5.9677 -2.8453 0.7741 10 8 5.2591 -3.7161 1.2418 11 6 7.4302 -2.9276 0.9227 12 6 8.3551 -1.9913 0.5421 13 7 9.5486 -2.4876 0.8688 14 7 9.3974 -3.6423 1.4122 15 7 8.1506 -3.9567 1.4703 16 6 7.5987 -5.1934 2.0290 17 6 3.4650 -0.9452 1.3250 18 7 2.0225 -0.6980 1.1954 19 6 1.1536 -1.1098 2.1704 20 1 0.1511 -1.4131 1.9073 21 6 1.5616 -1.1377 3.4969 22 7 2.7030 -0.5830 3.8462 23 14 0.4908 -1.9623 4.7863 24 1 0.8666 -3.3945 4.8996 25 1 0.6900 -1.2931 6.0969 26 1 -0.9356 -1.8551 4.3875 27 1 -0.3633 0.5095 0.8925 28 1 -0.3633 0.5183 -0.8875 29 1 -0.3634 -1.0276 -0.0051 30 1 1.6029 -1.7269 -1.2891 31 1 1.7660 -0.1695 -2.1366 32 1 4.0061 0.1460 -1.0995 33 1 3.9378 -1.3474 -2.0651 34 1 5.9808 -1.1489 -0.3152 35 1 8.1569 -1.0403 0.0703 36 1 7.4361 -5.9135 1.2272 37 1 8.2988 -5.6086 2.7539 38 1 6.6505 -4.9780 2.5218 39 1 3.6517 -1.5689 2.1992 40 1 3.9903 0.0039 1.4317 41 1 2.9879 -0.6021 4.7732 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071481927.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:08 Heat of formation + Delta-G solvation = 59.308154 kcal Electronic energy + Delta-G solvation = -24277.681117 eV Core-core repulsion = 20808.537880 eV Total energy + Delta-G solvation = -3469.143237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.39180 -40.89740 -39.19540 -36.30365 -35.52744 -34.65674 -33.15937 -31.82704 -31.46768 -29.06925 -27.77267 -26.85417 -24.99525 -23.96175 -23.45692 -22.08405 -21.62291 -20.91024 -19.13334 -18.34114 -17.87439 -17.75234 -17.32501 -16.75057 -15.93730 -15.83799 -15.44724 -15.34361 -15.10948 -14.92160 -14.46411 -14.29486 -14.09337 -13.91642 -13.52791 -13.22477 -13.03658 -12.74012 -12.71412 -12.55841 -12.30914 -12.27484 -12.10030 -11.95514 -11.63437 -11.43414 -11.30609 -11.16355 -11.08129 -10.66327 -10.53736 -10.12984 -8.55823 -7.83619 -5.33947 -0.17180 1.05204 1.18113 1.42815 1.45315 1.52206 1.94828 2.10278 2.50789 3.26004 3.33782 3.41407 3.69766 3.73524 3.97010 4.03431 4.13526 4.17095 4.28328 4.42244 4.48555 4.59641 4.65427 4.74845 4.83337 4.90336 4.93438 5.04310 5.12114 5.21616 5.27315 5.30180 5.35536 5.43126 5.57994 5.64195 5.72445 5.82408 6.38155 6.47800 7.04865 7.19190 7.20871 7.91508 8.41088 9.20607 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.005065 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.082767 B = 5527.264420 C = 6736.045702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.133 3.867 7 H 0.060 0.940 8 N -0.686 5.686 9 C 0.592 3.408 10 O -0.569 6.569 11 C -0.078 4.078 12 C 0.015 3.985 13 N -0.298 5.298 14 N -0.077 5.077 15 N -0.254 5.254 16 C 0.071 3.929 17 C 0.178 3.822 18 N -0.603 5.603 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.051 4.051 22 N -0.934 5.934 23 Si 0.956 3.044 24 H -0.293 1.293 25 H -0.296 1.296 26 H -0.263 1.263 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.417 0.583 35 H 0.236 0.764 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.002 0.998 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -2.776 -11.880 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.028 3.972 7 H 0.078 0.922 8 N -0.337 5.337 9 C 0.376 3.624 10 O -0.447 6.447 11 C -0.213 4.213 12 C -0.145 4.145 13 N -0.160 5.160 14 N -0.058 5.058 15 N -0.052 5.052 16 C -0.068 4.068 17 C 0.051 3.949 18 N -0.327 5.327 19 C -0.378 4.378 20 H 0.090 0.910 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.785 3.215 24 H -0.221 1.221 25 H -0.223 1.223 26 H -0.188 1.188 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.253 0.747 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.020 0.980 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.641 -3.847 -11.051 13.975 hybrid contribution -1.248 0.063 1.154 1.701 sum 6.393 -3.783 -9.896 12.374 Atomic orbital electron populations 1.21738 0.94984 1.01091 1.00949 1.20819 0.94142 0.93484 0.86755 0.95928 1.21950 0.94627 1.00899 0.98250 1.21669 0.97022 1.00224 0.95743 1.21667 0.77783 0.99756 0.98037 0.92196 1.45529 1.08267 1.26196 1.53731 1.16887 0.84513 0.82510 0.78492 1.90819 1.63450 1.40644 1.49825 1.22022 0.94918 0.93545 1.10799 1.24491 0.86664 1.01652 1.01741 1.74849 1.24367 1.02710 1.14084 1.78201 0.98446 1.11275 1.17857 1.47896 1.04686 1.16065 1.36503 1.22760 1.01430 0.80815 1.01824 1.20801 0.83853 0.95536 0.94684 1.44285 1.02516 1.65676 1.20236 1.19441 0.96311 1.35867 0.86210 0.91016 1.25855 0.98786 1.00664 0.99281 1.70122 1.23758 1.47887 1.16248 0.85429 0.79515 0.77650 0.78907 1.22076 1.22309 1.18771 0.94468 0.90407 0.93579 0.92836 0.88634 0.90449 0.89341 0.74490 0.74750 0.86878 0.85421 0.88361 0.93815 0.98009 0.94698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 7.97 71.98 0.57 -3.88 16 2 C 0.15 5.70 3.50 44.97 0.16 5.86 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.32 5.37 30.67 0.16 -3.15 16 5 C -0.11 -2.80 5.35 30.62 0.16 -2.64 16 6 C 0.13 4.63 2.65 45.07 0.12 4.75 16 7 H 0.06 2.44 7.51 -2.39 -0.02 2.42 16 8 N -0.69 -19.37 5.06 -445.63 -2.26 -21.63 16 9 C 0.59 19.22 7.77 86.61 0.67 19.89 16 10 O -0.57 -23.06 14.60 -4.09 -0.06 -23.12 16 11 C -0.08 -2.18 6.98 40.41 0.28 -1.90 16 12 C 0.02 0.36 11.54 84.18 0.97 1.34 16 13 N -0.30 -8.44 12.35 -57.50 -0.71 -9.15 16 14 N -0.08 -2.22 13.14 37.02 0.49 -1.73 16 15 N -0.25 -6.91 3.79 -356.77 -1.35 -8.26 16 16 C 0.07 1.49 10.82 127.77 1.38 2.87 16 17 C 0.18 8.31 4.82 86.37 0.42 8.72 16 18 N -0.60 -28.90 2.98 -675.23 -2.01 -30.91 16 19 C -0.25 -13.32 8.52 84.03 0.72 -12.60 16 20 H 0.07 3.74 6.30 -2.91 -0.02 3.72 16 21 C -0.05 -2.86 5.05 84.86 0.43 -2.43 16 22 N -0.93 -55.92 11.09 21.65 0.24 -55.68 16 23 Si 0.96 45.90 29.57 68.60 2.03 47.93 16 24 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 27 H 0.04 1.43 7.65 -2.39 -0.02 1.41 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.05 1.62 7.43 -2.39 -0.02 1.60 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.42 8.13 7.67 -92.71 -0.71 7.42 16 35 H 0.24 3.28 7.59 -2.91 -0.02 3.26 16 36 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 2.50 6.68 -2.38 -0.02 2.48 16 39 H 0.04 2.48 6.15 -2.39 -0.01 2.47 16 40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -74.47 332.80 2.75 -71.72 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.34 Total: 14.01 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.05 Total: 16.83 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.61 Total: -127.37 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.06 Total: -23.12 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.47 2.75 -71.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071481927.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.025 kcal (2) G-P(sol) polarization free energy of solvation -74.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds