Wall clock time and date at job start Tue Mar 31 2020 03:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58358 * 2 1 4 4 C 1.53190 * 109.58780 * 120.28713 * 2 1 3 5 5 C 1.53040 * 109.31010 * 174.56505 * 4 2 1 6 6 C 1.53039 * 109.53796 * 298.63017 * 5 4 2 7 7 H 1.08993 * 109.50248 * 301.41494 * 6 5 4 8 8 N 1.46508 * 109.49422 * 181.31766 * 6 5 4 9 9 C 1.34777 * 119.99514 * 155.00658 * 8 6 5 10 10 O 1.21614 * 120.00267 * 4.87971 * 9 8 6 11 11 C 1.47230 * 119.99707 * 184.88458 * 9 8 6 12 12 C 1.37003 * 127.19004 * 357.24638 * 11 9 8 13 13 N 1.33321 * 106.37233 * 179.97438 * 12 11 9 14 14 N 1.28505 * 109.43916 * 0.02562 * 13 12 11 15 15 N 1.28714 * 110.63866 * 359.71318 * 14 13 12 16 16 C 1.46500 * 126.03765 * 180.30136 * 15 14 13 17 17 C 1.53190 * 109.31037 * 61.37158 * 6 5 4 18 18 N 1.46924 * 108.77503 * 305.36321 * 17 6 5 19 19 C 1.36939 * 120.62934 * 233.63406 * 18 17 6 20 20 H 1.07998 * 120.00465 * 141.54188 * 19 18 17 21 21 C 1.38813 * 119.99903 * 321.53389 * 19 18 17 22 22 N 1.31619 * 120.00155 * 349.69282 * 21 19 18 23 23 Si 1.86806 * 119.99978 * 169.69427 * 21 19 18 24 24 H 1.48496 * 109.47143 * 90.00251 * 23 21 19 25 25 H 1.48501 * 109.46514 * 209.99994 * 23 21 19 26 26 H 1.48493 * 109.46894 * 330.00010 * 23 21 19 27 27 H 1.08997 * 109.47188 * 299.99680 * 1 2 3 28 28 H 1.09005 * 109.47263 * 59.99640 * 1 2 3 29 29 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.49518 * 294.51400 * 4 2 1 31 31 H 1.08997 * 109.49531 * 54.61492 * 4 2 1 32 32 H 1.08994 * 109.46063 * 58.65872 * 5 4 2 33 33 H 1.09005 * 109.45647 * 178.61323 * 5 4 2 34 34 H 0.96994 * 119.99946 * 335.00835 * 8 6 5 35 35 H 1.07999 * 126.81753 * 0.02562 * 12 11 9 36 36 H 1.09004 * 109.47343 * 270.79447 * 16 15 14 37 37 H 1.09007 * 109.47310 * 30.78674 * 16 15 14 38 38 H 1.08993 * 109.47513 * 150.78581 * 16 15 14 39 39 H 1.09007 * 109.58963 * 65.14837 * 17 6 5 40 40 H 1.08995 * 109.59021 * 185.43259 * 17 6 5 41 41 H 0.96998 * 120.00504 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 3.5678 -0.8434 1.1727 6 6 3.9603 -1.6608 -0.0601 7 1 3.5037 -2.6488 -0.0020 8 7 5.4181 -1.7974 -0.1123 9 6 5.9743 -2.8394 -0.7615 10 8 5.2715 -3.6167 -1.3786 11 6 7.4329 -3.0365 -0.7235 12 6 8.3623 -2.2290 -0.1227 13 7 9.5494 -2.7948 -0.3416 14 7 9.3905 -3.8716 -1.0247 15 7 8.1438 -4.0690 -1.2770 16 6 7.5841 -5.1967 -2.0261 17 6 3.4685 -0.9435 -1.3211 18 7 2.0254 -0.6989 -1.1937 19 6 1.1584 -1.1150 -2.1686 20 1 0.1928 -1.5156 -1.8975 21 6 1.5207 -1.0219 -3.5054 22 7 2.6011 -0.3535 -3.8494 23 14 0.4749 -1.8452 -4.8161 24 1 -0.5645 -0.8957 -5.2887 25 1 1.3363 -2.2447 -5.9578 26 1 -0.1784 -3.0496 -4.2437 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7638 -0.1655 2.1371 31 1 1.6049 -1.7247 1.2920 32 1 4.0045 0.1528 1.1021 33 1 3.9381 -1.3391 2.0701 34 1 5.9827 -1.1381 0.3203 35 1 8.1712 -1.3157 0.4213 36 1 7.5504 -4.9475 -3.0868 37 1 8.2102 -6.0769 -1.8795 38 1 6.5754 -5.4049 -1.6696 39 1 3.9920 0.0066 -1.4288 40 1 3.6598 -1.5671 -2.1944 41 1 2.8545 -0.2887 -4.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071481928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:11 Heat of formation + Delta-G solvation = 80.797100 kcal Electronic energy + Delta-G solvation = -24228.511159 eV Core-core repulsion = 20760.299753 eV Total energy + Delta-G solvation = -3468.211406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.32982 -39.54176 -37.65705 -35.02688 -34.29746 -32.86617 -31.88667 -30.34049 -29.91047 -28.11560 -26.18805 -25.10122 -23.75486 -22.49240 -22.24866 -20.71252 -20.29348 -19.37856 -17.97676 -16.85321 -16.65855 -16.44894 -15.71677 -15.19342 -14.58196 -14.31619 -14.08765 -13.86317 -13.76157 -13.40742 -13.37134 -13.05384 -12.84227 -12.48943 -12.15989 -11.89909 -11.50278 -11.21159 -11.14829 -10.95772 -10.78498 -10.63570 -10.48025 -10.31622 -10.28896 -10.07373 -9.98206 -9.64421 -9.57729 -9.48533 -8.73462 -8.47261 -6.52661 -5.80164 -3.34702 0.93090 2.05916 2.24913 3.19677 3.25037 3.37005 3.43822 3.45711 4.26039 4.45730 4.51101 4.69181 4.93723 4.98520 5.25592 5.31047 5.31456 5.42411 5.49733 5.54267 5.61612 5.84670 5.90272 6.04059 6.21244 6.24289 6.29767 6.35612 6.39043 6.43486 6.58692 6.63824 6.75982 7.02807 7.12134 7.21151 7.60086 7.62418 7.83407 8.21387 8.30549 8.51380 9.20530 9.81231 10.42457 11.27519 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.004938 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.966609 B = 5669.127258 C = 6903.180313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.119 3.881 7 H 0.085 0.915 8 N -0.700 5.700 9 C 0.589 3.411 10 O -0.526 6.526 11 C -0.059 4.059 12 C -0.005 4.005 13 N -0.276 5.276 14 N -0.068 5.068 15 N -0.255 5.255 16 C 0.076 3.924 17 C 0.172 3.828 18 N -0.581 5.581 19 C -0.258 4.258 20 H 0.064 0.936 21 C 0.016 3.984 22 N -0.897 5.897 23 Si 0.899 3.101 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.396 0.604 35 H 0.197 0.803 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.021 0.979 40 H 0.083 0.917 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -3.698 9.331 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.014 3.986 7 H 0.103 0.897 8 N -0.350 5.350 9 C 0.371 3.629 10 O -0.402 6.402 11 C -0.194 4.194 12 C -0.165 4.165 13 N -0.139 5.139 14 N -0.049 5.049 15 N -0.052 5.052 16 C -0.064 4.064 17 C 0.045 3.955 18 N -0.304 5.304 19 C -0.388 4.388 20 H 0.082 0.918 21 C -0.185 4.185 22 N -0.539 5.539 23 Si 0.729 3.271 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.203 1.203 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.230 0.770 35 H 0.214 0.786 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.039 0.961 40 H 0.101 0.899 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.703 -4.819 8.508 12.447 hybrid contribution -1.166 0.301 -0.573 1.334 sum 6.536 -4.518 7.935 11.229 Atomic orbital electron populations 1.21768 0.95917 1.01339 1.00177 1.20522 0.93145 0.93575 0.86946 0.95686 1.22053 0.94039 1.01385 0.99116 1.21688 0.97632 0.99751 0.96415 1.22147 0.76356 1.01251 0.98865 0.89725 1.45811 1.09127 1.25456 1.54636 1.16658 0.83780 0.82390 0.80029 1.90847 1.62445 1.45290 1.41572 1.22185 0.96046 0.94066 1.07082 1.23856 0.88075 1.01787 1.02820 1.74851 1.23511 1.02768 1.12784 1.78234 0.97949 1.14145 1.14553 1.47619 1.05054 1.18033 1.34459 1.22571 1.01600 0.85224 0.97036 1.20998 0.84248 0.96709 0.93549 1.43907 1.02224 1.64755 1.19531 1.18991 0.99203 1.35615 0.84967 0.91821 1.25328 0.97566 0.97773 0.97801 1.69967 1.25816 1.41695 1.16436 0.86359 0.79749 0.79423 0.81590 1.21254 1.21623 1.20273 0.94420 0.91945 0.92909 0.92537 0.92076 0.91989 0.92873 0.76954 0.78574 0.88490 0.88152 0.86433 0.96092 0.89898 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.04 37.16 0.30 -2.15 16 2 C 0.16 3.22 3.49 -67.60 -0.24 2.99 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.00 5.37 -26.61 -0.14 -2.14 16 5 C -0.12 -1.70 5.35 -26.69 -0.14 -1.84 16 6 C 0.12 2.09 2.57 -67.81 -0.17 1.91 16 7 H 0.08 1.68 7.65 -51.93 -0.40 1.28 16 8 N -0.70 -10.19 5.07 -54.83 -0.28 -10.47 16 9 C 0.59 9.44 7.76 -12.61 -0.10 9.34 16 10 O -0.53 -10.24 14.59 5.27 0.08 -10.16 16 11 C -0.06 -0.83 6.98 -82.34 -0.57 -1.40 16 12 C 0.00 -0.06 11.54 -17.35 -0.20 -0.26 16 13 N -0.28 -4.03 12.35 30.47 0.38 -3.66 16 14 N -0.07 -1.00 13.14 60.35 0.79 -0.20 16 15 N -0.26 -3.48 3.79 -64.12 -0.24 -3.73 16 16 C 0.08 0.79 10.91 59.85 0.65 1.45 16 17 C 0.17 3.91 4.80 -3.71 -0.02 3.90 16 18 N -0.58 -13.83 2.94 -164.78 -0.48 -14.31 16 19 C -0.26 -6.83 8.31 -15.06 -0.13 -6.95 16 20 H 0.06 1.66 6.52 -52.49 -0.34 1.32 16 21 C 0.02 0.43 5.02 -17.43 -0.09 0.34 16 22 N -0.90 -25.85 11.59 55.49 0.64 -25.20 16 23 Si 0.90 21.64 29.57 -169.99 -5.03 16.62 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 29 H 0.05 0.97 7.40 -51.93 -0.38 0.59 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.40 4.36 7.63 -40.82 -0.31 4.05 16 35 H 0.20 1.63 7.55 -52.49 -0.40 1.23 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.12 1.33 6.48 -51.93 -0.34 0.99 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 2.24 6.67 -51.93 -0.35 1.89 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -32.61 333.71 -5.81 -38.43 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.85 Total: 2.48 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.85 Total: 5.18 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.81 Total: -57.57 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.61 -5.81 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071481928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.226 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds