Wall clock time and date at job start Tue Mar 31 2020 03:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.58358 * 2 1 4 4 C 1.53190 * 109.58780 * 120.28713 * 2 1 3 5 5 C 1.53040 * 109.31010 * 174.56505 * 4 2 1 6 6 C 1.53039 * 109.53796 * 298.63017 * 5 4 2 7 7 H 1.08993 * 109.50248 * 301.41494 * 6 5 4 8 8 N 1.46508 * 109.49422 * 181.31766 * 6 5 4 9 9 C 1.34777 * 119.99514 * 155.00658 * 8 6 5 10 10 O 1.21614 * 120.00267 * 4.87971 * 9 8 6 11 11 C 1.47230 * 119.99707 * 184.88458 * 9 8 6 12 12 C 1.37003 * 127.19004 * 357.24638 * 11 9 8 13 13 N 1.33321 * 106.37233 * 179.97438 * 12 11 9 14 14 N 1.28505 * 109.43916 * 0.02562 * 13 12 11 15 15 N 1.28714 * 110.63866 * 359.71318 * 14 13 12 16 16 C 1.46500 * 126.03765 * 180.30136 * 15 14 13 17 17 C 1.53190 * 109.31037 * 61.37158 * 6 5 4 18 18 N 1.46924 * 108.77503 * 305.36321 * 17 6 5 19 19 C 1.36939 * 120.62934 * 233.63406 * 18 17 6 20 20 H 1.07998 * 120.00465 * 141.54188 * 19 18 17 21 21 C 1.38813 * 119.99903 * 321.53389 * 19 18 17 22 22 N 1.31619 * 120.00155 * 349.69282 * 21 19 18 23 23 Si 1.86806 * 119.99978 * 169.69427 * 21 19 18 24 24 H 1.48496 * 109.47143 * 90.00251 * 23 21 19 25 25 H 1.48501 * 109.46514 * 209.99994 * 23 21 19 26 26 H 1.48493 * 109.46894 * 330.00010 * 23 21 19 27 27 H 1.08997 * 109.47188 * 299.99680 * 1 2 3 28 28 H 1.09005 * 109.47263 * 59.99640 * 1 2 3 29 29 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.49518 * 294.51400 * 4 2 1 31 31 H 1.08997 * 109.49531 * 54.61492 * 4 2 1 32 32 H 1.08994 * 109.46063 * 58.65872 * 5 4 2 33 33 H 1.09005 * 109.45647 * 178.61323 * 5 4 2 34 34 H 0.96994 * 119.99946 * 335.00835 * 8 6 5 35 35 H 1.07999 * 126.81753 * 0.02562 * 12 11 9 36 36 H 1.09004 * 109.47343 * 270.79447 * 16 15 14 37 37 H 1.09007 * 109.47310 * 30.78674 * 16 15 14 38 38 H 1.08993 * 109.47513 * 150.78581 * 16 15 14 39 39 H 1.09007 * 109.58963 * 65.14837 * 17 6 5 40 40 H 1.08995 * 109.59021 * 185.43259 * 17 6 5 41 41 H 0.96998 * 120.00504 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7279 1.2463 5 6 3.5678 -0.8434 1.1727 6 6 3.9603 -1.6608 -0.0601 7 1 3.5037 -2.6488 -0.0020 8 7 5.4181 -1.7974 -0.1123 9 6 5.9743 -2.8394 -0.7615 10 8 5.2715 -3.6167 -1.3786 11 6 7.4329 -3.0365 -0.7235 12 6 8.3623 -2.2290 -0.1227 13 7 9.5494 -2.7948 -0.3416 14 7 9.3905 -3.8716 -1.0247 15 7 8.1438 -4.0690 -1.2770 16 6 7.5841 -5.1967 -2.0261 17 6 3.4685 -0.9435 -1.3211 18 7 2.0254 -0.6989 -1.1937 19 6 1.1584 -1.1150 -2.1686 20 1 0.1928 -1.5156 -1.8975 21 6 1.5207 -1.0219 -3.5054 22 7 2.6011 -0.3535 -3.8494 23 14 0.4749 -1.8452 -4.8161 24 1 -0.5645 -0.8957 -5.2887 25 1 1.3363 -2.2447 -5.9578 26 1 -0.1784 -3.0496 -4.2437 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7638 -0.1655 2.1371 31 1 1.6049 -1.7247 1.2920 32 1 4.0045 0.1528 1.1021 33 1 3.9381 -1.3391 2.0701 34 1 5.9827 -1.1381 0.3203 35 1 8.1712 -1.3157 0.4213 36 1 7.5504 -4.9475 -3.0868 37 1 8.2102 -6.0769 -1.8795 38 1 6.5754 -5.4049 -1.6696 39 1 3.9920 0.0066 -1.4288 40 1 3.6598 -1.5671 -2.1944 41 1 2.8545 -0.2887 -4.7834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071481928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:10 Heat of formation + Delta-G solvation = 56.836569 kcal Electronic energy + Delta-G solvation = -24229.550166 eV Core-core repulsion = 20760.299753 eV Total energy + Delta-G solvation = -3469.250413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.39512 -40.90444 -39.17884 -36.30664 -35.52422 -34.62357 -33.15507 -31.86363 -31.48268 -29.06981 -27.76817 -26.82428 -24.98966 -23.97810 -23.46052 -22.08735 -21.63545 -20.91891 -19.13574 -18.31745 -17.88069 -17.75311 -17.31008 -16.74681 -15.96576 -15.79584 -15.49080 -15.34907 -15.10709 -14.93476 -14.45224 -14.30136 -14.12179 -13.91185 -13.47766 -13.22513 -13.02941 -12.75898 -12.70152 -12.54518 -12.37129 -12.27312 -12.14512 -11.96241 -11.64774 -11.44526 -11.30333 -11.14044 -11.08069 -10.66145 -10.55077 -10.13076 -8.47745 -7.84676 -5.41693 -0.17328 1.04999 1.18197 1.42059 1.44396 1.52393 1.97816 2.06011 2.49938 3.25634 3.32744 3.40825 3.70170 3.73786 3.96350 4.03201 4.13483 4.16705 4.28817 4.41853 4.48379 4.59780 4.65034 4.75647 4.83532 4.90695 4.94060 5.05305 5.12611 5.21692 5.27147 5.30226 5.34926 5.40729 5.58775 5.62073 5.72846 5.79240 6.38646 6.49580 7.04616 7.19826 7.21157 7.89607 8.43722 9.18895 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.004938 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.966609 B = 5669.127258 C = 6903.180313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.020 0.980 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.136 3.864 7 H 0.061 0.939 8 N -0.686 5.686 9 C 0.590 3.410 10 O -0.567 6.567 11 C -0.078 4.078 12 C 0.016 3.984 13 N -0.298 5.298 14 N -0.077 5.077 15 N -0.254 5.254 16 C 0.070 3.930 17 C 0.183 3.817 18 N -0.601 5.601 19 C -0.254 4.254 20 H 0.065 0.935 21 C -0.042 4.042 22 N -0.931 5.931 23 Si 0.955 3.045 24 H -0.280 1.280 25 H -0.299 1.299 26 H -0.270 1.270 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.418 0.582 35 H 0.238 0.762 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.001 0.999 40 H 0.031 0.969 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -3.426 11.955 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.038 0.962 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.030 3.970 7 H 0.079 0.921 8 N -0.338 5.338 9 C 0.375 3.625 10 O -0.446 6.446 11 C -0.213 4.213 12 C -0.145 4.145 13 N -0.160 5.160 14 N -0.058 5.058 15 N -0.052 5.052 16 C -0.069 4.069 17 C 0.056 3.944 18 N -0.326 5.326 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.238 4.238 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.206 1.206 25 H -0.226 1.226 26 H -0.195 1.195 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.255 0.745 35 H 0.254 0.746 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.019 0.981 40 H 0.049 0.951 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.953 -4.532 11.184 14.452 hybrid contribution -1.245 0.230 -1.359 1.857 sum 6.708 -4.302 9.824 12.650 Atomic orbital electron populations 1.21706 0.95005 1.01049 1.00799 1.20816 0.94116 0.93376 0.86874 0.96248 1.21950 0.94651 1.00934 0.98192 1.21672 0.96977 1.00211 0.95780 1.21643 0.77726 0.99769 0.97877 0.92081 1.45551 1.08227 1.25689 1.54307 1.16907 0.84497 0.82005 0.79123 1.90833 1.63639 1.46835 1.43301 1.22006 0.95076 0.95285 1.08893 1.24509 0.86649 1.02096 1.01225 1.74853 1.24456 1.03168 1.13508 1.78206 0.98227 1.14523 1.14864 1.47897 1.04865 1.18354 1.34036 1.22773 1.01600 0.85638 0.96906 1.20699 0.84182 0.95151 0.94348 1.44202 1.02270 1.65674 1.20413 1.19281 0.99378 1.34051 0.85728 0.91717 1.26007 0.98890 0.99127 0.99805 1.70117 1.27603 1.43888 1.15966 0.85475 0.78311 0.78808 0.79112 1.20608 1.22561 1.19502 0.90475 0.94640 0.93582 0.88666 0.92753 0.90531 0.89094 0.74462 0.74596 0.88038 0.85105 0.87539 0.98060 0.95054 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 8.04 71.98 0.58 -3.88 16 2 C 0.15 5.78 3.49 44.97 0.16 5.94 16 3 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 4 C -0.12 -3.32 5.37 30.67 0.16 -3.15 16 5 C -0.11 -2.77 5.35 30.62 0.16 -2.60 16 6 C 0.14 4.65 2.57 45.07 0.12 4.77 16 7 H 0.06 2.42 7.65 -2.39 -0.02 2.41 16 8 N -0.69 -19.02 5.07 -445.63 -2.26 -21.28 16 9 C 0.59 18.78 7.76 86.61 0.67 19.45 16 10 O -0.57 -22.82 14.59 -4.08 -0.06 -22.88 16 11 C -0.08 -2.10 6.98 40.41 0.28 -1.82 16 12 C 0.02 0.36 11.54 84.18 0.97 1.33 16 13 N -0.30 -8.17 12.35 -57.50 -0.71 -8.88 16 14 N -0.08 -2.18 13.14 37.02 0.49 -1.69 16 15 N -0.25 -6.74 3.79 -356.77 -1.35 -8.09 16 16 C 0.07 1.45 10.91 127.77 1.39 2.84 16 17 C 0.18 8.55 4.80 86.36 0.41 8.97 16 18 N -0.60 -29.01 2.94 -675.23 -1.98 -30.99 16 19 C -0.25 -13.74 8.31 84.03 0.70 -13.04 16 20 H 0.07 3.43 6.52 -2.91 -0.02 3.41 16 21 C -0.04 -2.38 5.02 84.86 0.43 -1.96 16 22 N -0.93 -56.04 11.59 21.65 0.25 -55.79 16 23 Si 0.95 45.84 29.57 68.60 2.03 47.87 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.03 1.39 7.70 -2.38 -0.02 1.37 16 29 H 0.05 1.64 7.40 -2.39 -0.02 1.62 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.42 7.94 7.63 -92.71 -0.71 7.23 16 35 H 0.24 2.96 7.55 -2.91 -0.02 2.94 16 36 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.11 2.48 6.48 -2.39 -0.02 2.46 16 39 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 40 H 0.03 1.77 6.67 -2.39 -0.02 1.75 16 41 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -75.05 333.71 2.78 -72.26 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.34 Total: 12.62 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 6.04 Total: 16.85 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -5.57 Total: -126.72 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.06 Total: -22.88 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.05 2.78 -72.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071481928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.101 kcal (2) G-P(sol) polarization free energy of solvation -75.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds