Wall clock time and date at job start Tue Mar 31 2020 03:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70556 * 2 1 4 4 C 1.53198 * 109.58642 * 239.64355 * 2 1 3 5 5 C 1.53105 * 109.33046 * 185.57769 * 4 2 1 6 6 C 1.53038 * 109.50507 * 61.34482 * 5 4 2 7 7 H 1.08997 * 109.50080 * 178.68231 * 6 5 4 8 8 N 1.46499 * 109.49856 * 58.61618 * 6 5 4 9 9 C 1.34772 * 119.99888 * 155.06701 * 8 6 5 10 10 O 1.21622 * 120.00245 * 4.90922 * 9 8 6 11 11 C 1.47240 * 119.99825 * 184.91367 * 9 8 6 12 12 C 1.37001 * 127.19068 * 5.02735 * 11 9 8 13 13 N 1.33315 * 106.37647 * 180.02562 * 12 11 9 14 14 N 1.28518 * 109.43889 * 359.97438 * 13 12 11 15 15 N 1.28715 * 110.63327 * 0.02562 * 14 13 12 16 16 C 1.46509 * 126.03101 * 180.25785 * 15 14 13 17 17 C 1.53198 * 109.33700 * 298.65254 * 6 5 4 18 18 N 1.46921 * 108.77721 * 54.65050 * 17 6 5 19 19 C 1.36932 * 120.63188 * 126.37055 * 18 17 6 20 20 H 1.08005 * 120.00181 * 212.10230 * 19 18 17 21 21 C 1.38808 * 120.00068 * 32.09765 * 19 18 17 22 22 N 1.31624 * 120.00122 * 10.36587 * 21 19 18 23 23 Si 1.86802 * 120.00039 * 190.36384 * 21 19 18 24 24 H 1.48503 * 109.47073 * 60.00457 * 23 21 19 25 25 H 1.48498 * 109.47016 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47217 * 300.00243 * 23 21 19 27 27 H 1.09002 * 109.47082 * 299.64210 * 1 2 3 28 28 H 1.09003 * 109.46976 * 59.64371 * 1 2 3 29 29 H 1.09005 * 109.47143 * 179.64701 * 1 2 3 30 30 H 1.08999 * 109.50008 * 305.52828 * 4 2 1 31 31 H 1.09001 * 109.49566 * 65.59337 * 4 2 1 32 32 H 1.09002 * 109.45078 * 301.35303 * 5 4 2 33 33 H 1.08994 * 109.50489 * 181.37282 * 5 4 2 34 34 H 0.97005 * 120.00242 * 335.06865 * 8 6 5 35 35 H 1.08011 * 126.81358 * 359.97438 * 12 11 9 36 36 H 1.08999 * 109.47249 * 264.19392 * 16 15 14 37 37 H 1.09003 * 109.46916 * 24.20433 * 16 15 14 38 38 H 1.09007 * 109.46454 * 144.19783 * 16 15 14 39 39 H 1.08997 * 109.58507 * 174.44022 * 17 6 5 40 40 H 1.08997 * 109.58345 * 294.85812 * 17 6 5 41 41 H 0.96998 * 120.00067 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5681 -0.8483 -1.1706 6 6 3.9569 -1.6658 0.0634 7 1 5.0411 -1.7702 0.1039 8 7 3.3405 -2.9925 -0.0148 9 6 3.8959 -4.0330 0.6371 10 8 4.8562 -3.8541 1.3617 11 6 3.3402 -5.3865 0.4721 12 6 2.3321 -5.7705 -0.3724 13 7 2.1633 -7.0797 -0.1855 14 7 2.9940 -7.4954 0.7027 15 7 3.7232 -6.5252 1.1312 16 6 4.7806 -6.6225 2.1407 17 6 3.4650 -0.9470 1.3237 18 7 2.0226 -0.6996 1.1945 19 6 1.1537 -1.1135 2.1685 20 1 0.1508 -1.4155 1.9048 21 6 1.5618 -1.1449 3.4949 22 7 2.7026 -0.5901 3.8458 23 14 0.4919 -1.9747 4.7819 24 1 0.3118 -3.4057 4.4280 25 1 1.1470 -1.8727 6.1106 26 1 -0.8332 -1.3061 4.8299 27 1 -0.3633 0.5083 0.8932 28 1 -0.3633 0.5194 -0.8868 29 1 -0.3634 -1.0277 -0.0063 30 1 1.6030 -1.7254 -1.2914 31 1 1.7655 -0.1672 -2.1369 32 1 4.0068 0.1470 -1.0997 33 1 3.9389 -1.3453 -2.0670 34 1 2.5326 -3.1220 -0.5359 35 1 1.7825 -5.1379 -1.0539 36 1 4.3765 -6.3549 3.1170 37 1 5.1602 -7.6438 2.1719 38 1 5.5917 -5.9410 1.8839 39 1 3.6518 -1.5717 2.1971 40 1 3.9903 0.0019 1.4316 41 1 2.9876 -0.6117 4.7727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071481930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:16 Heat of formation + Delta-G solvation = 85.334317 kcal Electronic energy + Delta-G solvation = -24970.919581 eV Core-core repulsion = 21502.904923 eV Total energy + Delta-G solvation = -3468.014658 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.16860 -39.51924 -37.61817 -34.77887 -34.07533 -32.81346 -31.81582 -30.25654 -29.86803 -27.97795 -26.31242 -25.07997 -23.81454 -22.36966 -22.20466 -20.65629 -20.40894 -18.83556 -18.03791 -16.68684 -16.67168 -16.25287 -15.50023 -15.13103 -14.49908 -14.23262 -14.08004 -13.93037 -13.61038 -13.27679 -13.25711 -12.94854 -12.87948 -12.55887 -12.06365 -11.91635 -11.31067 -11.19940 -11.07315 -10.98966 -10.94554 -10.75770 -10.44857 -10.39483 -10.13551 -10.01180 -9.80290 -9.56035 -9.53148 -9.37609 -8.55004 -8.49413 -6.60486 -5.79135 -3.27378 1.10037 2.20960 2.40705 3.34681 3.35242 3.40918 3.41954 3.52271 4.42431 4.45751 4.64858 4.85696 5.10782 5.11097 5.25607 5.29699 5.35873 5.41859 5.45186 5.52989 5.67627 5.94333 5.99849 6.05174 6.08950 6.27486 6.31075 6.37768 6.43466 6.45693 6.54740 6.58531 6.78091 7.01311 7.07475 7.29121 7.63112 7.78672 7.84988 8.38288 8.46530 8.49148 9.20303 9.82956 10.39990 11.28465 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.006942 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.210767 B = 4032.173337 C = 4969.779777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.120 3.880 7 H 0.078 0.922 8 N -0.679 5.679 9 C 0.592 3.408 10 O -0.540 6.540 11 C -0.054 4.054 12 C -0.004 4.004 13 N -0.277 5.277 14 N -0.071 5.071 15 N -0.257 5.257 16 C 0.079 3.921 17 C 0.162 3.838 18 N -0.582 5.582 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.009 3.991 22 N -0.900 5.900 23 Si 0.897 3.103 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.399 0.601 35 H 0.195 0.805 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.028 0.972 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 -5.001 -9.397 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.096 0.904 8 N -0.329 5.329 9 C 0.374 3.626 10 O -0.417 6.417 11 C -0.189 4.189 12 C -0.165 4.165 13 N -0.140 5.140 14 N -0.051 5.051 15 N -0.053 5.053 16 C -0.062 4.062 17 C 0.035 3.965 18 N -0.306 5.306 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.191 4.191 22 N -0.544 5.544 23 Si 0.727 3.273 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.208 1.208 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.234 0.766 35 H 0.212 0.788 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.117 0.883 40 H 0.045 0.955 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.466 -6.336 -8.555 11.196 hybrid contribution -0.674 0.665 0.623 1.134 sum 2.791 -5.671 -7.932 10.142 Atomic orbital electron populations 1.21791 0.96051 1.01228 1.00242 1.20487 0.92954 0.93673 0.87111 0.95671 1.22093 0.95008 1.00726 0.99261 1.21714 0.97165 1.00238 0.96595 1.21917 0.96864 0.80948 0.98835 0.90407 1.45551 1.29002 1.08127 1.50221 1.16577 0.83311 0.82004 0.80661 1.90783 1.28310 1.84942 1.37700 1.22174 1.03421 0.91263 1.02030 1.23812 0.97894 0.93164 1.01607 1.74827 1.16980 1.10800 1.11367 1.78209 1.02826 1.14115 1.09999 1.47571 1.25289 1.04998 1.27440 1.22518 0.88399 1.05572 0.89702 1.21207 0.83926 0.97140 0.94225 1.44003 1.02596 1.64747 1.19208 1.19013 0.95890 1.37511 0.85632 0.91625 1.25141 0.97400 0.99284 0.97232 1.69929 1.21969 1.45681 1.16827 0.86473 0.80081 0.79511 0.81267 1.21262 1.21641 1.20827 0.92023 0.94410 0.92964 0.92695 0.92676 0.90825 0.92839 0.76564 0.78763 0.88609 0.88178 0.86681 0.88326 0.95454 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.97 37.16 0.30 -2.05 16 2 C 0.16 3.05 3.50 -67.60 -0.24 2.81 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.91 5.21 -26.57 -0.14 -2.05 16 5 C -0.12 -1.69 5.59 -26.66 -0.15 -1.84 16 6 C 0.12 2.07 2.77 -67.81 -0.19 1.88 16 7 H 0.08 1.36 7.65 -51.93 -0.40 0.96 16 8 N -0.68 -11.07 4.90 -54.82 -0.27 -11.34 16 9 C 0.59 10.40 7.76 -12.60 -0.10 10.30 16 10 O -0.54 -10.80 14.65 5.26 0.08 -10.72 16 11 C -0.05 -0.87 6.98 -82.33 -0.57 -1.44 16 12 C 0.00 -0.06 11.54 -17.36 -0.20 -0.26 16 13 N -0.28 -4.54 12.35 30.47 0.38 -4.17 16 14 N -0.07 -1.15 13.14 60.35 0.79 -0.36 16 15 N -0.26 -3.94 3.79 -64.11 -0.24 -4.19 16 16 C 0.08 0.93 10.82 59.85 0.65 1.58 16 17 C 0.16 3.61 4.85 -3.71 -0.02 3.59 16 18 N -0.58 -13.11 2.90 -164.78 -0.48 -13.58 16 19 C -0.25 -6.39 8.52 -15.06 -0.13 -6.51 16 20 H 0.07 1.65 6.29 -52.48 -0.33 1.32 16 21 C 0.01 0.23 5.05 -17.43 -0.09 0.14 16 22 N -0.90 -25.58 11.09 55.49 0.62 -24.97 16 23 Si 0.90 21.71 29.57 -169.99 -5.03 16.68 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H 0.06 1.19 7.65 -51.93 -0.40 0.79 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.90 7.43 -51.93 -0.39 0.52 16 30 H 0.05 0.77 6.40 -51.93 -0.33 0.44 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.40 5.74 5.84 -40.82 -0.24 5.50 16 35 H 0.20 2.12 7.59 -52.48 -0.40 1.73 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.11 1.39 6.68 -51.93 -0.35 1.05 16 39 H 0.10 2.62 6.12 -51.93 -0.32 2.30 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -31.41 329.36 -5.73 -37.14 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.66 Total: 4.40 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.88 Total: 6.15 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.80 Total: -58.61 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.41 -5.73 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071481930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.471 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds