Wall clock time and date at job start Tue Mar 31 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70556 * 2 1 4 4 C 1.53198 * 109.58642 * 239.64355 * 2 1 3 5 5 C 1.53105 * 109.33046 * 185.57769 * 4 2 1 6 6 C 1.53038 * 109.50507 * 61.34482 * 5 4 2 7 7 H 1.08997 * 109.50080 * 178.68231 * 6 5 4 8 8 N 1.46499 * 109.49856 * 58.61618 * 6 5 4 9 9 C 1.34772 * 119.99888 * 155.06701 * 8 6 5 10 10 O 1.21622 * 120.00245 * 4.90922 * 9 8 6 11 11 C 1.47240 * 119.99825 * 184.91367 * 9 8 6 12 12 C 1.37001 * 127.19068 * 5.02735 * 11 9 8 13 13 N 1.33315 * 106.37647 * 180.02562 * 12 11 9 14 14 N 1.28518 * 109.43889 * 359.97438 * 13 12 11 15 15 N 1.28715 * 110.63327 * 0.02562 * 14 13 12 16 16 C 1.46509 * 126.03101 * 180.25785 * 15 14 13 17 17 C 1.53198 * 109.33700 * 298.65254 * 6 5 4 18 18 N 1.46921 * 108.77721 * 54.65050 * 17 6 5 19 19 C 1.36932 * 120.63188 * 126.37055 * 18 17 6 20 20 H 1.08005 * 120.00181 * 212.10230 * 19 18 17 21 21 C 1.38808 * 120.00068 * 32.09765 * 19 18 17 22 22 N 1.31624 * 120.00122 * 10.36587 * 21 19 18 23 23 Si 1.86802 * 120.00039 * 190.36384 * 21 19 18 24 24 H 1.48503 * 109.47073 * 60.00457 * 23 21 19 25 25 H 1.48498 * 109.47016 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47217 * 300.00243 * 23 21 19 27 27 H 1.09002 * 109.47082 * 299.64210 * 1 2 3 28 28 H 1.09003 * 109.46976 * 59.64371 * 1 2 3 29 29 H 1.09005 * 109.47143 * 179.64701 * 1 2 3 30 30 H 1.08999 * 109.50008 * 305.52828 * 4 2 1 31 31 H 1.09001 * 109.49566 * 65.59337 * 4 2 1 32 32 H 1.09002 * 109.45078 * 301.35303 * 5 4 2 33 33 H 1.08994 * 109.50489 * 181.37282 * 5 4 2 34 34 H 0.97005 * 120.00242 * 335.06865 * 8 6 5 35 35 H 1.08011 * 126.81358 * 359.97438 * 12 11 9 36 36 H 1.08999 * 109.47249 * 264.19392 * 16 15 14 37 37 H 1.09003 * 109.46916 * 24.20433 * 16 15 14 38 38 H 1.09007 * 109.46454 * 144.19783 * 16 15 14 39 39 H 1.08997 * 109.58507 * 174.44022 * 17 6 5 40 40 H 1.08997 * 109.58345 * 294.85812 * 17 6 5 41 41 H 0.96998 * 120.00067 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5681 -0.8483 -1.1706 6 6 3.9569 -1.6658 0.0634 7 1 5.0411 -1.7702 0.1039 8 7 3.3405 -2.9925 -0.0148 9 6 3.8959 -4.0330 0.6371 10 8 4.8562 -3.8541 1.3617 11 6 3.3402 -5.3865 0.4721 12 6 2.3321 -5.7705 -0.3724 13 7 2.1633 -7.0797 -0.1855 14 7 2.9940 -7.4954 0.7027 15 7 3.7232 -6.5252 1.1312 16 6 4.7806 -6.6225 2.1407 17 6 3.4650 -0.9470 1.3237 18 7 2.0226 -0.6996 1.1945 19 6 1.1537 -1.1135 2.1685 20 1 0.1508 -1.4155 1.9048 21 6 1.5618 -1.1449 3.4949 22 7 2.7026 -0.5901 3.8458 23 14 0.4919 -1.9747 4.7819 24 1 0.3118 -3.4057 4.4280 25 1 1.1470 -1.8727 6.1106 26 1 -0.8332 -1.3061 4.8299 27 1 -0.3633 0.5083 0.8932 28 1 -0.3633 0.5194 -0.8868 29 1 -0.3634 -1.0277 -0.0063 30 1 1.6030 -1.7254 -1.2914 31 1 1.7655 -0.1672 -2.1369 32 1 4.0068 0.1470 -1.0997 33 1 3.9389 -1.3453 -2.0670 34 1 2.5326 -3.1220 -0.5359 35 1 1.7825 -5.1379 -1.0539 36 1 4.3765 -6.3549 3.1170 37 1 5.1602 -7.6438 2.1719 38 1 5.5917 -5.9410 1.8839 39 1 3.6518 -1.5717 2.1971 40 1 3.9903 0.0019 1.4316 41 1 2.9876 -0.6117 4.7727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071481930.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:15 Heat of formation + Delta-G solvation = 63.014453 kcal Electronic energy + Delta-G solvation = -24971.887443 eV Core-core repulsion = 21502.904923 eV Total energy + Delta-G solvation = -3468.982520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.36431 -40.93730 -39.10734 -36.08967 -35.46688 -34.49735 -33.15124 -31.76078 -31.42757 -29.04377 -27.84975 -26.79331 -25.10209 -23.85269 -23.50979 -22.07406 -21.75927 -20.36926 -19.27589 -18.24263 -17.86997 -17.70630 -17.13979 -16.61152 -15.92832 -15.80895 -15.54889 -15.29100 -15.07261 -14.71884 -14.39292 -14.30447 -13.99865 -13.89145 -13.63588 -13.21344 -12.97545 -12.83724 -12.59421 -12.55139 -12.40198 -12.25714 -12.13607 -12.05844 -11.52795 -11.32128 -11.21932 -11.09705 -11.02224 -10.62312 -10.51390 -9.99313 -8.49510 -7.80337 -5.28743 -0.13066 1.08593 1.20617 1.39959 1.41814 1.46315 2.03474 2.22958 2.49381 3.31723 3.35728 3.47970 3.67870 3.72511 4.01093 4.08580 4.14881 4.16352 4.24395 4.48238 4.53632 4.60859 4.69270 4.78785 4.85755 4.92808 5.02019 5.07926 5.11281 5.18852 5.30505 5.32827 5.38027 5.60902 5.63214 5.68330 5.76272 5.81112 6.48373 6.49959 7.11805 7.22569 7.23002 7.96070 8.46493 9.23753 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012688 B = 0.006942 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.210767 B = 4032.173337 C = 4969.779777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.014 0.986 4 C -0.121 4.121 5 C -0.111 4.111 6 C 0.131 3.869 7 H 0.074 0.926 8 N -0.669 5.669 9 C 0.590 3.410 10 O -0.572 6.572 11 C -0.075 4.075 12 C 0.012 3.988 13 N -0.297 5.297 14 N -0.079 5.079 15 N -0.256 5.256 16 C 0.073 3.927 17 C 0.170 3.830 18 N -0.594 5.594 19 C -0.234 4.234 20 H 0.072 0.928 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.946 3.054 24 H -0.288 1.288 25 H -0.302 1.302 26 H -0.273 1.273 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.411 0.589 35 H 0.231 0.769 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.051 0.949 40 H -0.001 1.001 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -5.590 -12.281 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.160 4.160 5 C -0.149 4.149 6 C 0.025 3.975 7 H 0.092 0.908 8 N -0.320 5.320 9 C 0.374 3.626 10 O -0.452 6.452 11 C -0.210 4.210 12 C -0.149 4.149 13 N -0.159 5.159 14 N -0.060 5.060 15 N -0.053 5.053 16 C -0.067 4.067 17 C 0.043 3.957 18 N -0.318 5.318 19 C -0.365 4.365 20 H 0.090 0.910 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.776 3.224 24 H -0.215 1.215 25 H -0.228 1.228 26 H -0.199 1.199 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.249 0.751 35 H 0.248 0.752 36 H 0.113 0.887 37 H 0.151 0.849 38 H 0.128 0.872 39 H 0.070 0.930 40 H 0.017 0.983 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.302 -6.934 -11.486 13.613 hybrid contribution -0.331 0.889 1.490 1.767 sum 1.971 -6.045 -9.996 11.847 Atomic orbital electron populations 1.21728 0.94937 1.01359 1.00641 1.20792 0.93997 0.93293 0.87146 0.96856 1.21988 0.94818 1.01218 0.97968 1.21697 0.97212 1.00011 0.95944 1.21624 0.96588 0.81330 0.97935 0.90762 1.45426 1.29302 1.07366 1.49913 1.16815 0.82904 0.82808 0.80040 1.90771 1.29806 1.85541 1.39037 1.22108 1.04614 0.90809 1.03489 1.24401 0.96825 0.92768 1.00897 1.74823 1.17496 1.11704 1.11890 1.78173 1.03132 1.14414 1.10268 1.47870 1.25337 1.04665 1.27419 1.22746 0.87551 1.07568 0.88837 1.20896 0.84106 0.95496 0.95227 1.44209 1.02225 1.65413 1.19938 1.19322 0.96174 1.34994 0.86024 0.90997 1.25746 0.98548 1.01071 0.99128 1.70102 1.23689 1.48196 1.16117 0.85667 0.79099 0.78522 0.79102 1.21502 1.22846 1.19881 0.94941 0.90716 0.92910 0.91537 0.89145 0.90651 0.89144 0.75136 0.75223 0.88741 0.84904 0.87200 0.93024 0.98293 0.94819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 7.97 71.98 0.57 -3.54 16 2 C 0.15 5.33 3.50 44.97 0.16 5.49 16 3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 4 C -0.12 -2.97 5.21 30.70 0.16 -2.81 16 5 C -0.11 -2.73 5.59 30.64 0.17 -2.56 16 6 C 0.13 4.37 2.77 45.07 0.12 4.50 16 7 H 0.07 2.55 7.65 -2.39 -0.02 2.54 16 8 N -0.67 -20.59 4.90 -445.62 -2.18 -22.78 16 9 C 0.59 20.34 7.76 86.61 0.67 21.01 16 10 O -0.57 -23.27 14.65 -4.10 -0.06 -23.33 16 11 C -0.08 -2.32 6.98 40.41 0.28 -2.04 16 12 C 0.01 0.32 11.54 84.18 0.97 1.29 16 13 N -0.30 -9.17 12.35 -57.50 -0.71 -9.88 16 14 N -0.08 -2.47 13.14 37.02 0.49 -1.99 16 15 N -0.26 -7.60 3.79 -356.74 -1.35 -8.95 16 16 C 0.07 1.67 10.82 127.77 1.38 3.05 16 17 C 0.17 7.74 4.85 86.37 0.42 8.16 16 18 N -0.59 -26.57 2.90 -675.23 -1.96 -28.53 16 19 C -0.23 -11.95 8.52 84.03 0.72 -11.23 16 20 H 0.07 3.54 6.29 -2.91 -0.02 3.52 16 21 C -0.05 -2.75 5.05 84.86 0.43 -2.32 16 22 N -0.93 -55.49 11.09 21.65 0.24 -55.25 16 23 Si 0.95 45.58 29.57 68.60 2.03 47.60 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 26 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 27 H 0.03 1.19 7.65 -2.39 -0.02 1.18 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.66 7.43 -2.38 -0.02 1.64 16 30 H 0.07 1.52 6.40 -2.39 -0.02 1.50 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.41 10.44 5.84 -92.70 -0.54 9.90 16 35 H 0.23 4.07 7.59 -2.91 -0.02 4.05 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.13 2.10 8.14 -2.39 -0.02 2.09 16 38 H 0.11 2.68 6.68 -2.38 -0.02 2.66 16 39 H 0.05 2.86 6.12 -2.39 -0.01 2.85 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -71.23 329.36 3.06 -68.17 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.51 Total: 15.92 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 6.06 Total: 19.00 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -5.48 Total: -127.37 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.06 Total: -23.33 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.23 3.06 -68.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071481930.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.186 kcal (2) G-P(sol) polarization free energy of solvation -71.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds