Wall clock time and date at job start Tue Mar 31 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.69851 * 2 1 4 4 C 1.53191 * 109.59023 * 239.64316 * 2 1 3 5 5 C 1.53041 * 109.31479 * 185.57564 * 4 2 1 6 6 C 1.53041 * 109.53473 * 61.36623 * 5 4 2 7 7 H 1.08998 * 109.49914 * 58.59001 * 6 5 4 8 8 N 1.46505 * 109.52110 * 178.67104 * 6 5 4 9 9 C 1.34771 * 119.99969 * 204.92020 * 8 6 5 10 10 O 1.21562 * 119.99745 * 359.97438 * 9 8 6 11 11 C 1.47871 * 120.00402 * 179.97438 * 9 8 6 12 12 N 1.34546 * 126.04224 * 0.02562 * 11 9 8 13 13 C 1.30874 * 107.26761 * 180.02562 * 12 11 9 14 14 N 1.34590 * 107.62460 * 0.02562 * 13 12 11 15 15 C 1.46497 * 125.74796 * 180.02562 * 14 13 12 16 16 N 1.28854 * 108.50059 * 359.72473 * 14 13 12 17 17 C 1.53187 * 109.31108 * 298.63342 * 6 5 4 18 18 N 1.46925 * 109.58618 * 120.35314 * 2 1 3 19 19 C 1.36932 * 120.63125 * 353.41812 * 18 2 1 20 20 H 1.07995 * 120.00282 * 41.16660 * 19 18 2 21 21 C 1.38819 * 119.99853 * 221.16385 * 19 18 2 22 22 N 1.31626 * 119.99718 * 214.83641 * 21 19 18 23 23 Si 1.86789 * 120.00252 * 34.84018 * 21 19 18 24 24 H 1.48501 * 109.47581 * 84.62306 * 23 21 19 25 25 H 1.48507 * 109.47512 * 204.62770 * 23 21 19 26 26 H 1.48510 * 109.47237 * 324.62446 * 23 21 19 27 27 H 1.08998 * 109.47241 * 299.64424 * 1 2 3 28 28 H 1.08999 * 109.47054 * 59.64828 * 1 2 3 29 29 H 1.08998 * 109.46538 * 179.64755 * 1 2 3 30 30 H 1.09000 * 109.49699 * 305.53198 * 4 2 1 31 31 H 1.08999 * 109.49841 * 65.59056 * 4 2 1 32 32 H 1.08996 * 109.46015 * 301.34804 * 5 4 2 33 33 H 1.09001 * 109.46075 * 181.38485 * 5 4 2 34 34 H 0.97002 * 119.99814 * 24.91043 * 8 6 5 35 35 H 1.07999 * 126.19032 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47029 * 89.99958 * 15 14 13 37 37 H 1.09002 * 109.46755 * 209.99516 * 15 14 13 38 38 H 1.08994 * 109.47250 * 329.99718 * 15 14 13 39 39 H 1.09001 * 109.58449 * 174.42725 * 17 6 5 40 40 H 1.09001 * 109.58694 * 294.70666 * 17 6 5 41 41 H 0.97000 * 119.99776 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2454 5 6 3.5676 -0.8479 -1.1701 6 6 3.9570 -1.6656 0.0636 7 1 3.4985 -2.6528 0.0053 8 7 5.4143 -1.8058 0.1180 9 6 5.9671 -2.8479 0.7698 10 8 5.2566 -3.6712 1.3129 11 6 7.4380 -2.9897 0.8243 12 7 8.3350 -2.1543 0.2696 13 6 9.5251 -2.6264 0.5409 14 7 9.3627 -3.7515 1.2614 15 6 10.4395 -4.6009 1.7765 16 7 8.1008 -3.9523 1.4273 17 6 3.4651 -0.9468 1.3237 18 7 2.0226 -0.6995 1.1945 19 6 1.1537 -1.1134 2.1685 20 1 0.2057 -1.5528 1.8954 21 6 1.4914 -0.9682 3.5072 22 7 1.1096 -1.8727 4.3840 23 14 2.4874 0.5105 4.0641 24 1 1.5764 1.6575 4.3085 25 1 3.2104 0.1768 5.3177 26 1 3.4676 0.8730 3.0090 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5193 -0.8868 29 1 -0.3632 -1.0277 -0.0063 30 1 1.6031 -1.7253 -1.2913 31 1 1.7656 -0.1672 -2.1368 32 1 4.0062 0.1474 -1.0992 33 1 3.9380 -1.3448 -2.0668 34 1 5.9812 -1.1486 -0.3151 35 1 10.4672 -2.1921 0.2403 36 1 10.7274 -4.2596 2.7708 37 1 10.0928 -5.6328 1.8328 38 1 11.2993 -4.5423 1.1091 39 1 3.6519 -1.5716 2.1972 40 1 3.9921 0.0010 1.4330 41 1 1.3459 -1.7714 5.3193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071487915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:28 Heat of formation + Delta-G solvation = 84.476509 kcal Electronic energy + Delta-G solvation = -23965.020968 eV Core-core repulsion = 20496.969113 eV Total energy + Delta-G solvation = -3468.051855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.52931 -39.40989 -37.65248 -34.77407 -34.43380 -32.69735 -31.85553 -30.79465 -30.57963 -28.09144 -26.14193 -24.91607 -23.77356 -22.52790 -22.23096 -20.71444 -20.18195 -19.33208 -18.06955 -16.91590 -16.49462 -16.43273 -15.89608 -15.23753 -14.78113 -14.38431 -14.27921 -13.80783 -13.74104 -13.49402 -13.37635 -13.30250 -12.82664 -12.35930 -12.06621 -11.97698 -11.70309 -11.38755 -11.11578 -10.69288 -10.58479 -10.56623 -10.54914 -10.41721 -10.19592 -10.01428 -9.77595 -9.67850 -9.63299 -9.42072 -8.68131 -8.21763 -6.61070 -5.97812 -3.28120 1.37697 2.03322 2.05132 3.23446 3.48744 3.58237 3.58822 3.63128 4.02537 4.17201 4.61418 4.63437 4.68365 4.87059 4.95406 5.10468 5.28118 5.35832 5.53191 5.62052 5.86638 5.89361 6.06930 6.15889 6.18088 6.24775 6.31637 6.37250 6.40012 6.46851 6.60429 6.68372 6.73604 6.87721 7.06494 7.14333 7.22776 7.69038 8.01022 8.13182 8.50359 8.54163 9.09814 9.82706 10.30569 11.17495 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.004620 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.117399 B = 6058.921123 C = 6960.427779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 H 0.027 0.973 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.125 3.875 7 H 0.092 0.908 8 N -0.703 5.703 9 C 0.607 3.393 10 O -0.505 6.505 11 C 0.151 3.849 12 N -0.486 5.486 13 C 0.186 3.814 14 N -0.309 5.309 15 C 0.087 3.913 16 N -0.253 5.253 17 C 0.139 3.861 18 N -0.590 5.590 19 C -0.276 4.276 20 H 0.078 0.922 21 C 0.053 3.947 22 N -0.875 5.875 23 Si 0.841 3.159 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.261 1.261 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.403 0.597 35 H 0.225 0.775 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.204 -0.390 -11.076 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.020 3.980 7 H 0.110 0.890 8 N -0.355 5.355 9 C 0.387 3.613 10 O -0.377 6.377 11 C -0.130 4.130 12 N -0.212 5.212 13 C -0.109 4.109 14 N -0.104 5.104 15 C -0.054 4.054 16 N -0.092 5.092 17 C 0.012 3.988 18 N -0.314 5.314 19 C -0.404 4.404 20 H 0.095 0.905 21 C -0.150 4.150 22 N -0.513 5.513 23 Si 0.668 3.332 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.186 1.186 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.238 0.762 35 H 0.241 0.759 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.209 -1.321 -10.314 20.969 hybrid contribution 1.506 1.202 0.368 1.961 sum 19.715 -0.119 -9.946 22.082 Atomic orbital electron populations 1.21760 0.95336 1.01827 1.00198 1.20626 0.93676 0.93314 0.86807 0.95550 1.22025 0.94005 1.01658 0.98838 1.21678 0.97536 0.99658 0.96534 1.21923 0.77001 1.01448 0.97655 0.88977 1.45827 1.08656 1.26214 1.54766 1.16314 0.82648 0.82481 0.79849 1.90909 1.60687 1.41922 1.44134 1.23986 0.96703 0.91618 1.00673 1.71264 0.98554 1.28007 1.23326 1.26461 0.99635 0.87939 0.96903 1.47400 1.05218 1.20208 1.37601 1.22225 0.86447 0.95725 1.01036 1.74399 0.90155 1.24058 1.20561 1.21644 0.85170 0.96594 0.95421 1.44268 1.01884 1.65022 1.20241 1.18554 1.02108 1.35508 0.84260 0.90498 1.25578 0.96575 0.96830 0.96002 1.70099 1.46853 1.31095 1.03277 0.87377 0.80768 0.86949 0.78095 1.21509 1.22488 1.18615 0.91819 0.94355 0.92485 0.91664 0.92344 0.92053 0.92461 0.76221 0.75857 0.89176 0.88165 0.88079 0.91020 0.95707 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.07 37.16 0.30 -2.22 16 2 C 0.16 3.22 3.50 -67.60 -0.24 2.98 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 5 C -0.12 -1.82 5.36 -26.69 -0.14 -1.96 16 6 C 0.12 2.41 2.60 -67.81 -0.18 2.23 16 7 H 0.09 2.02 7.58 -51.93 -0.39 1.62 16 8 N -0.70 -12.21 5.08 -54.62 -0.28 -12.49 16 9 C 0.61 11.89 7.80 -12.32 -0.10 11.80 16 10 O -0.51 -12.09 16.75 5.31 0.09 -12.00 16 11 C 0.15 2.54 7.96 -156.36 -1.24 1.29 16 12 N -0.49 -6.61 11.09 -12.36 -0.14 -6.75 16 13 C 0.19 1.72 12.62 -90.47 -1.14 0.57 16 14 N -0.31 -3.15 3.72 -69.39 -0.26 -3.41 16 15 C 0.09 0.37 11.38 59.85 0.68 1.05 16 16 N -0.25 -3.99 12.08 32.07 0.39 -3.60 16 17 C 0.14 3.23 4.17 -3.71 -0.02 3.22 16 18 N -0.59 -14.35 2.47 -164.78 -0.41 -14.75 16 19 C -0.28 -7.82 8.42 -15.06 -0.13 -7.95 16 20 H 0.08 2.30 6.83 -52.49 -0.36 1.94 16 21 C 0.05 1.58 4.82 -17.43 -0.08 1.50 16 22 N -0.88 -27.46 13.97 55.49 0.78 -26.68 16 23 Si 0.84 22.41 27.39 -169.99 -4.66 17.76 16 24 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 26 H -0.26 -6.72 5.24 56.52 0.30 -6.42 16 27 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.13 7.42 -51.93 -0.39 0.74 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.40 5.91 8.31 -40.82 -0.34 5.57 16 35 H 0.23 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.07 1.94 7.02 -51.93 -0.36 1.58 16 40 H 0.03 0.58 6.71 -51.93 -0.35 0.23 16 41 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -37.85 335.24 -7.91 -45.77 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.06 Total: 0.82 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -2.43 Total: 10.29 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: 0.08 Total: -67.69 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.66 Total: 17.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.85 -7.91 -45.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071487915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.242 kcal (2) G-P(sol) polarization free energy of solvation -37.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds