Wall clock time and date at job start Tue Mar 31 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.69851 * 2 1 4 4 C 1.53191 * 109.59023 * 239.64316 * 2 1 3 5 5 C 1.53041 * 109.31479 * 185.57564 * 4 2 1 6 6 C 1.53041 * 109.53473 * 61.36623 * 5 4 2 7 7 H 1.08998 * 109.49914 * 58.59001 * 6 5 4 8 8 N 1.46505 * 109.52110 * 178.67104 * 6 5 4 9 9 C 1.34771 * 119.99969 * 204.92020 * 8 6 5 10 10 O 1.21562 * 119.99745 * 359.97438 * 9 8 6 11 11 C 1.47871 * 120.00402 * 179.97438 * 9 8 6 12 12 N 1.34546 * 126.04224 * 0.02562 * 11 9 8 13 13 C 1.30874 * 107.26761 * 180.02562 * 12 11 9 14 14 N 1.34590 * 107.62460 * 0.02562 * 13 12 11 15 15 C 1.46497 * 125.74796 * 180.02562 * 14 13 12 16 16 N 1.28854 * 108.50059 * 359.72473 * 14 13 12 17 17 C 1.53187 * 109.31108 * 298.63342 * 6 5 4 18 18 N 1.46925 * 109.58618 * 120.35314 * 2 1 3 19 19 C 1.36932 * 120.63125 * 353.41812 * 18 2 1 20 20 H 1.07995 * 120.00282 * 41.16660 * 19 18 2 21 21 C 1.38819 * 119.99853 * 221.16385 * 19 18 2 22 22 N 1.31626 * 119.99718 * 214.83641 * 21 19 18 23 23 Si 1.86789 * 120.00252 * 34.84018 * 21 19 18 24 24 H 1.48501 * 109.47581 * 84.62306 * 23 21 19 25 25 H 1.48507 * 109.47512 * 204.62770 * 23 21 19 26 26 H 1.48510 * 109.47237 * 324.62446 * 23 21 19 27 27 H 1.08998 * 109.47241 * 299.64424 * 1 2 3 28 28 H 1.08999 * 109.47054 * 59.64828 * 1 2 3 29 29 H 1.08998 * 109.46538 * 179.64755 * 1 2 3 30 30 H 1.09000 * 109.49699 * 305.53198 * 4 2 1 31 31 H 1.08999 * 109.49841 * 65.59056 * 4 2 1 32 32 H 1.08996 * 109.46015 * 301.34804 * 5 4 2 33 33 H 1.09001 * 109.46075 * 181.38485 * 5 4 2 34 34 H 0.97002 * 119.99814 * 24.91043 * 8 6 5 35 35 H 1.07999 * 126.19032 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47029 * 89.99958 * 15 14 13 37 37 H 1.09002 * 109.46755 * 209.99516 * 15 14 13 38 38 H 1.08994 * 109.47250 * 329.99718 * 15 14 13 39 39 H 1.09001 * 109.58449 * 174.42725 * 17 6 5 40 40 H 1.09001 * 109.58694 * 294.70666 * 17 6 5 41 41 H 0.97000 * 119.99776 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2454 5 6 3.5676 -0.8479 -1.1701 6 6 3.9570 -1.6656 0.0636 7 1 3.4985 -2.6528 0.0053 8 7 5.4143 -1.8058 0.1180 9 6 5.9671 -2.8479 0.7698 10 8 5.2566 -3.6712 1.3129 11 6 7.4380 -2.9897 0.8243 12 7 8.3350 -2.1543 0.2696 13 6 9.5251 -2.6264 0.5409 14 7 9.3627 -3.7515 1.2614 15 6 10.4395 -4.6009 1.7765 16 7 8.1008 -3.9523 1.4273 17 6 3.4651 -0.9468 1.3237 18 7 2.0226 -0.6995 1.1945 19 6 1.1537 -1.1134 2.1685 20 1 0.2057 -1.5528 1.8954 21 6 1.4914 -0.9682 3.5072 22 7 1.1096 -1.8727 4.3840 23 14 2.4874 0.5105 4.0641 24 1 1.5764 1.6575 4.3085 25 1 3.2104 0.1768 5.3177 26 1 3.4676 0.8730 3.0090 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5193 -0.8868 29 1 -0.3632 -1.0277 -0.0063 30 1 1.6031 -1.7253 -1.2913 31 1 1.7656 -0.1672 -2.1368 32 1 4.0062 0.1474 -1.0992 33 1 3.9380 -1.3448 -2.0668 34 1 5.9812 -1.1486 -0.3151 35 1 10.4672 -2.1921 0.2403 36 1 10.7274 -4.2596 2.7708 37 1 10.0928 -5.6328 1.8328 38 1 11.2993 -4.5423 1.1091 39 1 3.6519 -1.5716 2.1972 40 1 3.9921 0.0010 1.4330 41 1 1.3459 -1.7714 5.3193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071487915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:28 Heat of formation + Delta-G solvation = 55.812968 kcal Electronic energy + Delta-G solvation = -23966.263912 eV Core-core repulsion = 20496.969113 eV Total energy + Delta-G solvation = -3469.294800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.45787 -40.96472 -39.30674 -36.17077 -35.53037 -34.63016 -32.81177 -32.56598 -32.26426 -28.93300 -27.73532 -26.65598 -25.03108 -24.12456 -23.20567 -22.13665 -21.66840 -20.98465 -19.20974 -18.46184 -17.77876 -17.59691 -17.34994 -16.77323 -16.39018 -15.88833 -15.75517 -15.40179 -15.11647 -14.99044 -14.57897 -14.44188 -13.99719 -13.93437 -13.73863 -13.38974 -12.98021 -12.86366 -12.74686 -12.60807 -12.47809 -12.10907 -11.85030 -11.68418 -11.58335 -11.52984 -11.46725 -11.31611 -11.19951 -10.65429 -10.53687 -10.16918 -8.62014 -8.27444 -5.52590 0.27716 1.11673 1.28048 1.32912 1.36563 1.45714 2.02471 2.23164 2.45940 2.89915 3.09779 3.42127 3.54915 3.83461 3.91486 4.06369 4.16466 4.32501 4.34239 4.40095 4.46590 4.67604 4.67898 4.72934 4.79650 4.88205 4.99441 5.01173 5.07812 5.13098 5.20828 5.28106 5.29971 5.40083 5.57335 5.66357 5.69238 5.93241 6.26620 6.37014 6.95377 7.01064 7.11956 7.66623 8.16060 8.92635 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.004620 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.117399 B = 6058.921123 C = 6960.427779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.151 3.849 3 H 0.044 0.956 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.135 3.865 7 H 0.057 0.943 8 N -0.686 5.686 9 C 0.602 3.398 10 O -0.566 6.566 11 C 0.119 3.881 12 N -0.505 5.505 13 C 0.209 3.791 14 N -0.301 5.301 15 C 0.074 3.926 16 N -0.290 5.290 17 C 0.143 3.857 18 N -0.604 5.604 19 C -0.258 4.258 20 H 0.048 0.952 21 C -0.005 4.005 22 N -0.928 5.928 23 Si 0.901 3.099 24 H -0.281 1.281 25 H -0.309 1.309 26 H -0.245 1.245 27 H 0.038 0.962 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.420 0.580 35 H 0.287 0.713 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.150 0.850 39 H 0.020 0.980 40 H 0.033 0.967 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.762 1.872 -14.139 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.062 0.938 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.029 3.971 7 H 0.076 0.924 8 N -0.338 5.338 9 C 0.385 3.615 10 O -0.442 6.442 11 C -0.159 4.159 12 N -0.231 5.231 13 C -0.085 4.085 14 N -0.097 5.097 15 C -0.064 4.064 16 N -0.132 5.132 17 C 0.016 3.984 18 N -0.329 5.329 19 C -0.388 4.388 20 H 0.065 0.935 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.728 3.272 24 H -0.208 1.208 25 H -0.236 1.236 26 H -0.169 1.169 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.258 0.742 35 H 0.302 0.698 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.168 0.832 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.825 0.997 -13.442 25.652 hybrid contribution 0.534 0.408 1.263 1.430 sum 22.359 1.405 -12.179 25.499 Atomic orbital electron populations 1.21708 0.94894 1.00852 1.01119 1.20975 0.94270 0.94030 0.86064 0.93848 1.21957 0.94296 1.00976 0.98528 1.21669 0.97101 1.00331 0.95290 1.21579 0.77921 0.99855 0.97734 0.92423 1.45611 1.08002 1.26085 1.54106 1.16799 0.84119 0.81904 0.78682 1.90866 1.62618 1.44058 1.46630 1.23348 0.95575 0.93608 1.03413 1.71186 0.99536 1.28271 1.24133 1.27596 1.00236 0.86526 0.94188 1.47840 1.04220 1.20923 1.36690 1.22778 0.85944 0.94654 1.03057 1.74292 0.92872 1.24694 1.21310 1.21493 0.85040 0.96218 0.95627 1.44430 1.01706 1.65984 1.20812 1.18492 1.01417 1.33650 0.85232 0.93488 1.26138 0.98808 0.98998 0.96399 1.70206 1.50293 1.33064 1.03463 0.86414 0.79702 0.83639 0.77461 1.20770 1.23622 1.16939 0.94309 0.89899 0.94496 0.93252 0.87866 0.89694 0.89311 0.74200 0.69770 0.87746 0.88775 0.83240 0.96147 0.94894 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.07 71.98 0.58 -4.12 16 2 C 0.15 5.71 3.50 44.98 0.16 5.87 16 3 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.12 -3.52 5.37 30.67 0.16 -3.36 16 5 C -0.11 -2.97 5.36 30.62 0.16 -2.80 16 6 C 0.14 5.21 2.60 45.07 0.12 5.32 16 7 H 0.06 2.64 7.58 -2.39 -0.02 2.62 16 8 N -0.69 -23.70 5.08 -445.00 -2.26 -25.96 16 9 C 0.60 24.53 7.80 86.79 0.68 25.21 16 10 O -0.57 -29.10 16.75 -3.91 -0.07 -29.17 16 11 C 0.12 4.03 7.96 137.13 1.09 5.13 16 12 N -0.50 -12.63 11.09 -193.03 -2.14 -14.77 16 13 C 0.21 3.02 12.62 180.30 2.27 5.30 16 14 N -0.30 -5.39 3.72 -373.46 -1.39 -6.78 16 15 C 0.07 0.39 11.38 127.77 1.45 1.84 16 16 N -0.29 -9.14 12.08 -52.44 -0.63 -9.77 16 17 C 0.14 6.77 4.17 86.36 0.36 7.13 16 18 N -0.60 -29.74 2.47 -675.23 -1.67 -31.40 16 19 C -0.26 -15.28 8.42 84.04 0.71 -14.57 16 20 H 0.05 3.01 6.83 -2.91 -0.02 2.99 16 21 C 0.00 -0.29 4.82 84.86 0.41 0.11 16 22 N -0.93 -61.73 13.97 21.65 0.30 -61.43 16 23 Si 0.90 48.01 27.39 68.60 1.88 49.89 16 24 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.31 -16.86 7.11 99.48 0.71 -16.15 16 26 H -0.25 -12.23 5.24 99.48 0.52 -11.71 16 27 H 0.04 1.58 7.68 -2.39 -0.02 1.56 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.04 1.47 7.42 -2.39 -0.02 1.45 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.42 11.56 8.31 -92.71 -0.77 10.79 16 35 H 0.29 0.04 8.06 -2.91 -0.02 0.01 16 36 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.02 1.15 7.02 -2.39 -0.02 1.13 16 40 H 0.03 1.50 6.71 -2.39 -0.02 1.49 16 41 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 Total: -1.00 -92.51 335.24 2.27 -90.24 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.09 Total: 8.08 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 8.16 Total: 31.06 kcal Atomic # 7 Polarization: -142.33 SS G_CDS: -7.79 Total: -150.11 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.07 Total: -29.17 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.88 Total: 49.89 kcal Total: -92.51 2.27 -90.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071487915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.056 kcal (2) G-P(sol) polarization free energy of solvation -92.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds