Wall clock time and date at job start Tue Mar 31 2020 03:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58976 * 2 1 4 4 C 1.53194 * 109.58792 * 120.42873 * 2 1 3 5 5 C 1.53043 * 109.31268 * 174.42176 * 4 2 1 6 6 C 1.53035 * 109.53771 * 298.63405 * 5 4 2 7 7 H 1.09000 * 109.50027 * 301.41781 * 6 5 4 8 8 N 1.46495 * 109.52760 * 181.33361 * 6 5 4 9 9 C 1.34777 * 120.00572 * 155.14295 * 8 6 5 10 10 O 1.21559 * 119.99747 * 0.02562 * 9 8 6 11 11 C 1.47868 * 120.00438 * 180.02562 * 9 8 6 12 12 N 1.34558 * 126.04518 * 0.03013 * 11 9 8 13 13 C 1.30863 * 107.26552 * 179.97438 * 12 11 9 14 14 N 1.34584 * 107.62715 * 359.97438 * 13 12 11 15 15 C 1.46506 * 125.74451 * 180.02562 * 14 13 12 16 16 N 1.28847 * 108.50502 * 359.73088 * 14 13 12 17 17 C 1.53198 * 109.31556 * 61.36378 * 6 5 4 18 18 N 1.46922 * 108.77529 * 305.36844 * 17 6 5 19 19 C 1.36932 * 120.63152 * 233.58442 * 18 17 6 20 20 H 1.08002 * 120.00789 * 150.17809 * 19 18 17 21 21 C 1.38822 * 119.99700 * 330.17363 * 19 18 17 22 22 N 1.31620 * 119.99894 * 344.49622 * 21 19 18 23 23 Si 1.86801 * 119.99668 * 164.49562 * 21 19 18 24 24 H 1.48502 * 109.47029 * 60.00488 * 23 21 19 25 25 H 1.48504 * 109.46699 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47482 * 300.00186 * 23 21 19 27 27 H 1.08994 * 109.47201 * 180.28146 * 1 2 3 28 28 H 1.09006 * 109.47041 * 300.28566 * 1 2 3 29 29 H 1.09001 * 109.47232 * 60.28116 * 1 2 3 30 30 H 1.09003 * 109.49299 * 294.37235 * 4 2 1 31 31 H 1.08993 * 109.49537 * 54.46935 * 4 2 1 32 32 H 1.08999 * 109.45643 * 178.61387 * 5 4 2 33 33 H 1.08998 * 109.44989 * 58.64744 * 5 4 2 34 34 H 0.97004 * 119.99969 * 335.14975 * 8 6 5 35 35 H 1.08007 * 126.18640 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47041 * 90.00542 * 15 14 13 37 37 H 1.09006 * 109.46585 * 209.99802 * 15 14 13 38 38 H 1.08993 * 109.47523 * 329.99824 * 15 14 13 39 39 H 1.08992 * 109.58728 * 185.57617 * 17 6 5 40 40 H 1.09003 * 109.69951 * 65.22377 * 17 6 5 41 41 H 0.96997 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6656 -0.0656 7 1 3.4983 -2.6528 -0.0087 8 7 5.4141 -1.8059 -0.1203 9 6 5.9670 -2.8465 -0.7744 10 8 5.2564 -3.6685 -1.3195 11 6 7.4378 -2.9884 -0.8291 12 7 8.3349 -2.1550 -0.2714 13 6 9.5249 -2.6263 -0.5440 14 7 9.3625 -3.7489 -1.2683 15 6 10.4393 -4.5974 -1.7851 16 7 8.1003 -3.9553 -1.4253 17 6 3.4650 -0.9453 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1537 -1.1099 -2.1703 20 1 0.1396 -1.3773 -1.9123 21 6 1.5763 -1.1838 -3.4906 22 7 2.6871 -0.5825 -3.8606 23 14 0.5684 -2.1367 -4.7419 24 1 -0.7920 -1.5482 -4.8331 25 1 1.2300 -2.0634 -6.0694 26 1 0.4664 -3.5561 -4.3179 27 1 -0.3633 -1.0276 0.0050 28 1 -0.3633 0.5183 0.8875 29 1 -0.3634 0.5095 -0.8925 30 1 1.7660 -0.1695 2.1366 31 1 1.6030 -1.7269 1.2891 32 1 3.9378 -1.3474 2.0651 33 1 4.0060 0.1460 1.0993 34 1 5.9812 -1.1499 0.3145 35 1 10.4670 -2.1927 -0.2424 36 1 10.6842 -5.3625 -1.0485 37 1 10.1141 -5.0741 -2.7098 38 1 11.3205 -3.9868 -1.9815 39 1 3.6518 -1.5690 -2.1991 40 1 3.9900 0.0037 -1.4343 41 1 2.9826 -0.6345 -4.7830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071487916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:31 Heat of formation + Delta-G solvation = 81.598164 kcal Electronic energy + Delta-G solvation = -23951.512473 eV Core-core repulsion = 20483.335803 eV Total energy + Delta-G solvation = -3468.176670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.43970 -39.23140 -37.46519 -34.68171 -34.29914 -32.72593 -31.76708 -30.69285 -29.78054 -27.99887 -25.98098 -24.97940 -23.67802 -22.34531 -22.09983 -20.63719 -19.97094 -19.23508 -17.93922 -16.82870 -16.41567 -16.28476 -15.70305 -15.19454 -14.66856 -14.28219 -13.91414 -13.71966 -13.60867 -13.43026 -13.29770 -13.19024 -12.63218 -12.31026 -11.98021 -11.78954 -11.38285 -11.04232 -10.82283 -10.62486 -10.51249 -10.48139 -10.43376 -10.33424 -10.19525 -9.92076 -9.81323 -9.56955 -9.45702 -9.36578 -8.45204 -8.32856 -6.52211 -5.65858 -3.10701 1.46899 2.11765 2.15524 3.36826 3.48984 3.54832 3.57187 3.72629 4.11814 4.25400 4.60813 4.67743 4.72976 4.95006 5.05685 5.43391 5.45667 5.56791 5.65835 5.77412 5.96645 6.05095 6.20335 6.25624 6.34936 6.36372 6.41694 6.47053 6.52789 6.57959 6.71115 6.82532 7.00152 7.12531 7.20747 7.40207 7.82348 7.83253 7.94359 8.13713 8.58231 8.66014 9.32755 9.97263 10.53065 11.42290 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.004591 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.072469 B = 6097.282728 C = 7371.881849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.118 3.882 7 H 0.084 0.916 8 N -0.698 5.698 9 C 0.608 3.392 10 O -0.511 6.511 11 C 0.154 3.846 12 N -0.485 5.485 13 C 0.185 3.815 14 N -0.310 5.310 15 C 0.087 3.913 16 N -0.255 5.255 17 C 0.168 3.832 18 N -0.583 5.583 19 C -0.254 4.254 20 H 0.070 0.930 21 C 0.007 3.993 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.402 0.598 35 H 0.225 0.775 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.019 0.981 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.909 -2.952 9.567 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.013 3.987 7 H 0.102 0.898 8 N -0.349 5.349 9 C 0.389 3.611 10 O -0.382 6.382 11 C -0.127 4.127 12 N -0.211 5.211 13 C -0.110 4.110 14 N -0.105 5.105 15 C -0.054 4.054 16 N -0.094 5.094 17 C 0.041 3.959 18 N -0.306 5.306 19 C -0.384 4.384 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.209 1.209 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.236 0.764 35 H 0.241 0.759 36 H 0.107 0.893 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.037 0.963 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.013 -3.779 8.818 17.817 hybrid contribution 0.524 -0.139 -0.545 0.769 sum 15.537 -3.919 8.273 18.033 Atomic orbital electron populations 1.21801 0.96033 1.01356 1.00182 1.20497 0.93038 0.93596 0.87057 0.95699 1.22048 0.94247 1.01335 0.98911 1.21674 0.97363 0.99771 0.96589 1.22076 0.76940 1.01133 0.98563 0.89787 1.45770 1.08730 1.26108 1.54298 1.16268 0.82527 0.82515 0.79819 1.90872 1.60734 1.42283 1.44355 1.24026 0.96777 0.91226 1.00647 1.71270 0.98539 1.28055 1.23199 1.26453 0.99655 0.88219 0.96701 1.47384 1.05200 1.20251 1.37708 1.22207 0.86511 0.94845 1.01816 1.74384 0.90125 1.23901 1.20981 1.21077 0.83610 0.97002 0.94217 1.44008 1.02580 1.64846 1.19213 1.19086 0.95058 1.38285 0.85948 0.91276 1.25088 0.97776 0.99244 0.97065 1.69997 1.24056 1.43536 1.16774 0.86410 0.79400 0.80505 0.80697 1.20943 1.21742 1.20884 0.92822 0.94381 0.91994 0.92625 0.92035 0.92927 0.92079 0.76355 0.75905 0.89309 0.88209 0.88109 0.88904 0.96266 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.95 37.16 0.30 -2.32 16 2 C 0.16 3.46 3.50 -67.60 -0.24 3.23 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.20 5.37 -26.61 -0.14 -2.35 16 5 C -0.12 -1.97 5.36 -26.69 -0.14 -2.11 16 6 C 0.12 2.44 2.60 -67.81 -0.18 2.26 16 7 H 0.08 1.94 7.58 -51.93 -0.39 1.54 16 8 N -0.70 -13.04 5.08 -54.63 -0.28 -13.32 16 9 C 0.61 12.60 7.80 -12.32 -0.10 12.50 16 10 O -0.51 -12.68 16.75 5.31 0.09 -12.60 16 11 C 0.15 2.73 7.96 -156.35 -1.24 1.49 16 12 N -0.49 -7.02 11.09 -12.36 -0.14 -7.16 16 13 C 0.19 1.84 12.62 -90.49 -1.14 0.70 16 14 N -0.31 -3.37 3.72 -69.39 -0.26 -3.63 16 15 C 0.09 0.42 11.38 59.85 0.68 1.10 16 16 N -0.26 -4.21 12.08 32.07 0.39 -3.82 16 17 C 0.17 4.25 4.86 -3.71 -0.02 4.23 16 18 N -0.58 -14.97 2.99 -164.77 -0.49 -15.46 16 19 C -0.25 -7.14 8.57 -15.06 -0.13 -7.27 16 20 H 0.07 1.88 6.24 -52.49 -0.33 1.55 16 21 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 22 N -0.90 -27.48 11.23 55.49 0.62 -26.86 16 23 Si 0.90 22.98 29.58 -169.99 -5.03 17.95 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 26 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 27 H 0.05 1.05 7.44 -51.93 -0.39 0.66 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.29 7.63 -51.93 -0.40 0.89 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.22 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 39 H 0.09 2.76 6.15 -51.93 -0.32 2.44 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -37.41 337.86 -8.39 -45.79 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.95 Total: 2.43 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -2.44 Total: 11.58 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -0.15 Total: -70.25 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.03 Total: 17.95 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.41 -8.39 -45.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071487916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.390 kcal (2) G-P(sol) polarization free energy of solvation -37.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds