Wall clock time and date at job start Tue Mar 31 2020 03:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.58976 * 2 1 4 4 C 1.53194 * 109.58792 * 120.42873 * 2 1 3 5 5 C 1.53043 * 109.31268 * 174.42176 * 4 2 1 6 6 C 1.53035 * 109.53771 * 298.63405 * 5 4 2 7 7 H 1.09000 * 109.50027 * 301.41781 * 6 5 4 8 8 N 1.46495 * 109.52760 * 181.33361 * 6 5 4 9 9 C 1.34777 * 120.00572 * 155.14295 * 8 6 5 10 10 O 1.21559 * 119.99747 * 0.02562 * 9 8 6 11 11 C 1.47868 * 120.00438 * 180.02562 * 9 8 6 12 12 N 1.34558 * 126.04518 * 0.03013 * 11 9 8 13 13 C 1.30863 * 107.26552 * 179.97438 * 12 11 9 14 14 N 1.34584 * 107.62715 * 359.97438 * 13 12 11 15 15 C 1.46506 * 125.74451 * 180.02562 * 14 13 12 16 16 N 1.28847 * 108.50502 * 359.73088 * 14 13 12 17 17 C 1.53198 * 109.31556 * 61.36378 * 6 5 4 18 18 N 1.46922 * 108.77529 * 305.36844 * 17 6 5 19 19 C 1.36932 * 120.63152 * 233.58442 * 18 17 6 20 20 H 1.08002 * 120.00789 * 150.17809 * 19 18 17 21 21 C 1.38822 * 119.99700 * 330.17363 * 19 18 17 22 22 N 1.31620 * 119.99894 * 344.49622 * 21 19 18 23 23 Si 1.86801 * 119.99668 * 164.49562 * 21 19 18 24 24 H 1.48502 * 109.47029 * 60.00488 * 23 21 19 25 25 H 1.48504 * 109.46699 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47482 * 300.00186 * 23 21 19 27 27 H 1.08994 * 109.47201 * 180.28146 * 1 2 3 28 28 H 1.09006 * 109.47041 * 300.28566 * 1 2 3 29 29 H 1.09001 * 109.47232 * 60.28116 * 1 2 3 30 30 H 1.09003 * 109.49299 * 294.37235 * 4 2 1 31 31 H 1.08993 * 109.49537 * 54.46935 * 4 2 1 32 32 H 1.08999 * 109.45643 * 178.61387 * 5 4 2 33 33 H 1.08998 * 109.44989 * 58.64744 * 5 4 2 34 34 H 0.97004 * 119.99969 * 335.14975 * 8 6 5 35 35 H 1.08007 * 126.18640 * 179.97438 * 13 12 11 36 36 H 1.09000 * 109.47041 * 90.00542 * 15 14 13 37 37 H 1.09006 * 109.46585 * 209.99802 * 15 14 13 38 38 H 1.08993 * 109.47523 * 329.99824 * 15 14 13 39 39 H 1.08992 * 109.58728 * 185.57617 * 17 6 5 40 40 H 1.09003 * 109.69951 * 65.22377 * 17 6 5 41 41 H 0.96997 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6656 -0.0656 7 1 3.4983 -2.6528 -0.0087 8 7 5.4141 -1.8059 -0.1203 9 6 5.9670 -2.8465 -0.7744 10 8 5.2564 -3.6685 -1.3195 11 6 7.4378 -2.9884 -0.8291 12 7 8.3349 -2.1550 -0.2714 13 6 9.5249 -2.6263 -0.5440 14 7 9.3625 -3.7489 -1.2683 15 6 10.4393 -4.5974 -1.7851 16 7 8.1003 -3.9553 -1.4253 17 6 3.4650 -0.9453 -1.3250 18 7 2.0225 -0.6980 -1.1954 19 6 1.1537 -1.1099 -2.1703 20 1 0.1396 -1.3773 -1.9123 21 6 1.5763 -1.1838 -3.4906 22 7 2.6871 -0.5825 -3.8606 23 14 0.5684 -2.1367 -4.7419 24 1 -0.7920 -1.5482 -4.8331 25 1 1.2300 -2.0634 -6.0694 26 1 0.4664 -3.5561 -4.3179 27 1 -0.3633 -1.0276 0.0050 28 1 -0.3633 0.5183 0.8875 29 1 -0.3634 0.5095 -0.8925 30 1 1.7660 -0.1695 2.1366 31 1 1.6030 -1.7269 1.2891 32 1 3.9378 -1.3474 2.0651 33 1 4.0060 0.1460 1.0993 34 1 5.9812 -1.1499 0.3145 35 1 10.4670 -2.1927 -0.2424 36 1 10.6842 -5.3625 -1.0485 37 1 10.1141 -5.0741 -2.7098 38 1 11.3205 -3.9868 -1.9815 39 1 3.6518 -1.5690 -2.1991 40 1 3.9900 0.0037 -1.4343 41 1 2.9826 -0.6345 -4.7830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071487916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:31 Heat of formation + Delta-G solvation = 53.898875 kcal Electronic energy + Delta-G solvation = -23952.713604 eV Core-core repulsion = 20483.335803 eV Total energy + Delta-G solvation = -3469.377801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.44195 -40.88009 -39.19638 -36.11039 -35.51255 -34.64427 -32.79618 -32.29412 -31.74094 -28.89931 -27.66687 -26.76863 -24.97641 -23.97379 -23.19806 -22.13450 -21.55953 -20.92886 -19.14565 -18.34441 -17.76151 -17.48787 -17.30136 -16.88857 -15.97545 -15.93383 -15.59029 -15.39364 -15.05688 -14.94872 -14.47995 -14.14496 -13.98257 -13.92451 -13.50443 -13.07103 -12.85735 -12.76787 -12.69505 -12.56054 -12.30135 -12.13959 -12.00593 -11.69576 -11.56955 -11.50352 -11.45151 -11.21638 -11.12171 -10.61478 -10.52659 -10.12995 -8.61998 -7.85128 -5.31778 0.29991 1.13872 1.30999 1.40163 1.46732 1.50356 2.06978 2.27641 2.50769 3.09341 3.31646 3.47789 3.71793 3.88017 3.97418 4.10145 4.25784 4.35285 4.39155 4.41214 4.58940 4.68183 4.72638 4.79829 4.82987 4.90540 5.02605 5.08493 5.18868 5.27116 5.31772 5.32448 5.40978 5.57086 5.61852 5.68173 5.70990 5.78202 6.37425 6.45505 6.97777 7.12858 7.17938 7.89969 8.40097 9.20265 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.004591 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.072469 B = 6097.282728 C = 7371.881849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.023 0.977 4 C -0.117 4.117 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.056 0.944 8 N -0.684 5.684 9 C 0.603 3.397 10 O -0.568 6.568 11 C 0.121 3.879 12 N -0.507 5.507 13 C 0.208 3.792 14 N -0.302 5.302 15 C 0.074 3.926 16 N -0.289 5.289 17 C 0.181 3.819 18 N -0.603 5.603 19 C -0.252 4.252 20 H 0.077 0.923 21 C -0.054 4.054 22 N -0.935 5.935 23 Si 0.957 3.043 24 H -0.264 1.264 25 H -0.298 1.298 26 H -0.286 1.286 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.417 0.583 35 H 0.287 0.713 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.039 0.961 40 H -0.001 1.001 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.688 -2.491 12.122 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.041 0.959 4 C -0.156 4.156 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.074 0.926 8 N -0.336 5.336 9 C 0.386 3.614 10 O -0.444 6.444 11 C -0.158 4.158 12 N -0.233 5.233 13 C -0.086 4.086 14 N -0.097 5.097 15 C -0.064 4.064 16 N -0.131 5.131 17 C 0.054 3.946 18 N -0.327 5.327 19 C -0.383 4.383 20 H 0.094 0.906 21 C -0.249 4.249 22 N -0.582 5.582 23 Si 0.786 3.214 24 H -0.190 1.190 25 H -0.224 1.224 26 H -0.212 1.212 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.254 0.746 35 H 0.303 0.697 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.165 0.835 39 H 0.057 0.943 40 H 0.017 0.983 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.813 -3.293 11.425 20.593 hybrid contribution 0.141 -0.289 -1.306 1.345 sum 16.954 -3.582 10.119 20.066 Atomic orbital electron populations 1.21733 0.94600 1.01202 1.01106 1.20837 0.94408 0.93425 0.86589 0.95926 1.21959 0.94141 1.01041 0.98453 1.21656 0.97375 0.99966 0.95471 1.21684 0.77867 0.99626 0.98300 0.92560 1.45591 1.08127 1.26058 1.53784 1.16774 0.84128 0.81902 0.78634 1.90819 1.62654 1.44287 1.46661 1.23347 0.95577 0.93336 1.03548 1.71186 0.99626 1.28404 1.24108 1.27592 1.00206 0.86788 0.94032 1.47841 1.04211 1.20898 1.36750 1.22779 0.85914 0.95780 1.01931 1.74270 0.92844 1.24382 1.21582 1.20720 0.84047 0.95224 0.94618 1.44310 1.02313 1.65769 1.20283 1.19470 0.95582 1.36672 0.86536 0.90553 1.25843 0.99103 1.00843 0.99115 1.70169 1.25972 1.45673 1.16360 0.85485 0.78832 0.78955 0.78163 1.18960 1.22426 1.21249 0.93489 0.90137 0.94339 0.88231 0.92730 0.89503 0.90714 0.74573 0.69741 0.87180 0.89028 0.83508 0.94259 0.98332 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.95 71.98 0.57 -4.18 16 2 C 0.15 6.26 3.50 44.97 0.16 6.42 16 3 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 5 C -0.11 -3.40 5.36 30.62 0.16 -3.24 16 6 C 0.13 5.56 2.60 45.07 0.12 5.68 16 7 H 0.06 2.72 7.58 -2.39 -0.02 2.70 16 8 N -0.68 -26.37 5.08 -445.01 -2.26 -28.64 16 9 C 0.60 26.40 7.80 86.79 0.68 27.07 16 10 O -0.57 -30.46 16.75 -3.90 -0.07 -30.53 16 11 C 0.12 4.39 7.96 137.13 1.09 5.48 16 12 N -0.51 -14.01 11.09 -193.03 -2.14 -16.15 16 13 C 0.21 3.43 12.62 180.30 2.27 5.71 16 14 N -0.30 -5.90 3.72 -373.44 -1.39 -7.29 16 15 C 0.07 0.47 11.38 127.77 1.45 1.93 16 16 N -0.29 -9.64 12.08 -52.44 -0.63 -10.27 16 17 C 0.18 9.65 4.86 86.37 0.42 10.07 16 18 N -0.60 -31.80 2.99 -675.21 -2.02 -33.82 16 19 C -0.25 -14.62 8.57 84.04 0.72 -13.90 16 20 H 0.08 4.22 6.24 -2.91 -0.02 4.20 16 21 C -0.05 -3.27 4.94 84.86 0.42 -2.85 16 22 N -0.94 -60.42 11.23 21.65 0.24 -60.18 16 23 Si 0.96 49.09 29.58 68.60 2.03 51.12 16 24 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 26 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 27 H 0.05 1.77 7.44 -2.39 -0.02 1.75 16 28 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.04 1.57 7.63 -2.39 -0.02 1.55 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.42 13.37 8.31 -92.71 -0.77 12.60 16 35 H 0.29 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.04 2.51 6.15 -2.39 -0.01 2.49 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -91.02 337.86 2.27 -88.75 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.27 Total: 12.41 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: 8.23 Total: 34.58 kcal Atomic # 7 Polarization: -148.14 SS G_CDS: -8.20 Total: -156.34 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.07 Total: -30.53 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.03 Total: 51.12 kcal Total: -91.02 2.27 -88.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071487916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.649 kcal (2) G-P(sol) polarization free energy of solvation -91.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds